Rroxscaffold_6G00404990

disease resistance RPP13-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0021726
Physical Location & Seq
Forward (+)
27458463 .. 27462797
4335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404990.1

Sequence Viewer

Length: 462 bp
ATGAGTCTTGGCCCACAAGCTCCTTTGGCAAATGGGCAGTCAATGCTGGAGAGGAAGCGTCTTTTTAGTCTTTCACATTTCTCGTTGTTGGATGAGTTGCAGATGGATCAGATGGATTGGGGCAAACTGCATGTTTTGTCTCCGAACTTGAGTTACTTGGAGATATTCGAATGTCCCAAACCTATTTTCGAGTTATGTGATGAGAATGGAGTGTGGAAAAAGGCAGACTCAGAGCAAGTAGACGCATCGAGTAGTAATGCTCATGCAAACAAAAAGGAGGAAGTACAAACAAGCAAAAAACTCAATGTCGGGAAGAGCAGCAAAGACCAAGAATATAACACAAGAAAATATTGTGTTGCTGTGCAAGATCAATCTCAAATTTTACTTGTTATTATAGTTGAAGGTGCTTTTGGGATGTCAAAAGCTAGTGCAAAACTGCAAGATTGTGAATGTTACCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

153

Amino Acids

17.23

Weight (kDa)

5.63

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 240
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 378
AfaI GTAC 1 cut(s) 285
AgsI TTSAA 1 cut(s) 401
AjuI GAANNNNNNNTTGG 4 cut(s) 170, 202, 393, 425
AluBI AGCT 2 cut(s) 20, 425
AluI AGCT 2 cut(s) 20, 425
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 114
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 318
ApoI RAATTY 1 cut(s) 378
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspS9I GGNCC 1 cut(s) 11
AsuII TTCGAA 1 cut(s) 168
BbvI GCAGC 1 cut(s) 330
BccI CCATC 2 cut(s) 97, 106
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 426
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 11
BmsI GCATC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 169
BseGI GGATG 2 cut(s) 97, 420
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 330
BshFI GGCC 1 cut(s) 12
BslFI GGGAC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 12
Bsp119I TTCGAA 1 cut(s) 168
Bsp143I GATC 2 cut(s) 106, 367
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 242
BspPI GGATC 1 cut(s) 114
BspQI GCTCTTC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 168
BssMI GATC 2 cut(s) 106, 367
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 43
BstBI TTCGAA 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 2 cut(s) 97, 420
BstKTI GATC 2 cut(s) 109, 370
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 106, 367
BstMWI GCNNNNNNNGC 2 cut(s) 26, 43
BstNSI RCATGY 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 330
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 2 cut(s) 97, 420
Cfr13I GGNCC 1 cut(s) 11
CseI GACGC 2 cut(s) 47, 251
Csp6I GTAC 1 cut(s) 284
CviAII CATG 2 cut(s) 131, 263
CviJI RGCY 3 cut(s) 12, 20, 425
CviKI_1 RGCY 3 cut(s) 12, 20, 425
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 1 cut(s) 229
DpnI GATC 2 cut(s) 108, 369
DpnII GATC 2 cut(s) 106, 367
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
FaeI CATG 2 cut(s) 134, 266
FaiI YATR 5 cut(s) 132, 196, 264, 336, 395
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 130, 262
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 2 cut(s) 104, 427
Fsp4HI GCNGC 1 cut(s) 319
FspBI CTAG 1 cut(s) 426
GluI GCNGC 1 cut(s) 319
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 12
HgaI GACGC 2 cut(s) 47, 251
Hin1II CATG 2 cut(s) 134, 266
HinfI GANTC 2 cut(s) 4, 227
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 111, 144, 232
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4V TGCA 6 cut(s) 100, 130, 266, 364, 431, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 43
HpyF3I CTNAG 1 cut(s) 229
Hsp92II CATG 2 cut(s) 134, 266
Kzo9I GATC 2 cut(s) 106, 367
LguI GCTCTTC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 1 cut(s) 32
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 1 cut(s) 254
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 2 cut(s) 152, 452
MalI GATC 2 cut(s) 108, 369
MboI GATC 2 cut(s) 106, 367
MboII GAAGA 1 cut(s) 325
MluCI AATT 1 cut(s) 378
MlyI GAGTC 2 cut(s) 13, 221
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 2 cut(s) 45, 271
MwoI GCNNNNNNNGC 2 cut(s) 26, 43
NdeII GATC 2 cut(s) 106, 367
NlaIII CATG 2 cut(s) 134, 266
NspI RCATGY 1 cut(s) 134
NspV TTCGAA 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 320
PleI GAGTC 2 cut(s) 12, 221
PpsI GAGTC 2 cut(s) 12, 221
PspPI GGNCC 1 cut(s) 11
PsrI GAACNNNNNNTAC 2 cut(s) 137, 169
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 308
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 2 cut(s) 106, 367
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 2 cut(s) 13, 221
SetI ASST 4 cut(s) 22, 184, 406, 427
SfaNI GCATC 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 1 cut(s) 378
SspI AATATT 1 cut(s) 350
SspMI CTAG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 458
TaqI TCGA 3 cut(s) 168, 189, 248
TasI AATT 1 cut(s) 378
TatI WGTACW 1 cut(s) 283
TseI GCWGC 1 cut(s) 318
XapI RAATTY 1 cut(s) 378
XceI RCATGY 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.