Rroxscaffold_6G00419240

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015251
Physical Location & Seq
Forward (+)
40753803 .. 40757338
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419240.1

Sequence Viewer

Length: 1644 bp
ATGTGCCTTCCTGGTACTGTATCTCGAGGAATTATAAATGGTCACGACCCTCTGATTCCGAAGCTAGATGGAGGAGGAGACTATAACAATGAAGAAGAGTACATGACAATGAGGTCAGATAGAAGCGAAGGTGGCCGCAGCAGCAGCACTAGCTTCATACAAAACCTCCGTCAACGGCTACAGCAGCAGCTTCCCACAAATGGGCTTCTCGGACGGCTGCCACTAACCGAGATAGGAGAAGAGTTACGGTCGCTGATAAAGATTGGAGGTCCAATAGTGATAACATCCCTACTTATATATTCAAGGTCTGTAATTTCAATGCTCTTCTTAGGTCGTCTTGGAAAAGCAGAGTTGGCCGGAGGCTCATTAGCACTTGGGTTTGGAAATATTACAGGCATCTCAATCCTCAGAGGGCTATGTACTGGTATGGACCCAATCTGTTGCCAAGCTTATGGAGCTCAAAGATGGACAGTTCTCAGCCAAACCTTCCAGAAAACCCTTTGTCTCCTTCTATTAGTTTCCATACCCATCTCATTCGCGTGGCTCAATATTGAGCCAATTTTCCTATGGTTAGGTCAAGATCCACAGATTACAAGAGTTGCTAGGGTTTACATGGTTTGCTCAATCCCTGAATTGCTAGCTCAAGCTCACCTCAACCCGTTGAGAGTCTTCTTAAGAACTCAAGGCCTTACCGCCCCACTCACTTTAGCTGCATGTTTCTCGGCCCTCATGCACTTACCCATCAACTATTTTTTAGTCTCTTACTTGAATTTGGGGGTGGAAGGTGTTGCTTTGGGACTTGCTTGGAACACTTGGAATTTGAATGTGGGGTTGGTGATTTATCTAGCTATCTCAAATAGAGCATTGAAACCTTGGAGTGGGCTCACAATTGTCTCTACGTTTCAAGGATGGAGACCGTTGCTAAGTTTAGCACTACCCAGTTGCGTTTCAGTGTGCTTGGAATGGTGGTGGTATGAAATTATGTTGTTCCTCTGTGGCATTTTGAGTAACCCACAAGCTAGTGTCGCAGCAATGGGTATCCTAATTCAAACAACAGGAATGTTATACATCTTTCCAATTTCGTTAAGTGCCGCCTTGTCAACTAGGGTTGGACATTCCTTAGGGGCGGGGCAACCCAGCCGAGCCCGATGGGCTGCCCTAATCGGTCTTCTGGTCGCGTTTGCTTTTGGGCTCTTCGCATTTGTTTTCATGACTTCTGTGAGAAATGTGTGGGGGACTATGTTCACAAATGAACCACAAATTCTTGAACTGATTTCAACGGCACTTCCAATCTTGGGGCTATGTGAACTTGGCAACACTCCTCAAACGGCTGCATGTGGAGTCTTGACAGGTACTGCACGACCTAAGCTTGGAGCGAGAATTAACTTGTACTCATTTTACCTTATTGGATTGCCGGTTGCTATTATTGCAACTTTTACATATGAAGTCGGGTTTTTGGGGCTGTGGCTTGGGTTACTATCAGCACAGGCTTCTTGTGTGTGTATGATGGTGTACACACTGGTTCACACAGATTGGAAGCACCAAACTAGAAGAGCTGAGGAGCTTACTCTGGCTGTGGAAGAGACTAATATTGAAGAGAAAGATGATGAAGAAAGTGGCCCGCTAACTCCTTCTGATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

547

Amino Acids

59.73

Weight (kDa)

6.61

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 91 - 251 2.7e-35 MatE
MatE PF01554 313 - 476 6.5e-35 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38510
fragaria_vesca FvH4_6g10060
malus_domestica MD04G1173000.v1.1 MD12G1186300.v1.1
prunus_persica Prupe.6G291800_v2.0.a1
pyrus_communis pycom12g17490
rosa_chinensis RchiOBHm_Chr3g0460761
rosa_laevigata RLG00000024983
rosa_multiflora Rmu_sc0007678.1_g000022
rosa_roxburghii Rroxscaffold_6G00419240
rosa_rugosa Rorug03G0046100
rosa_samantha Rh3AG103300 Rh3BG106900 Rh3CG108800 Rh3DG108600
rosa_wichuraiana Rw3G008790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 112
AccII CGCG 2 cut(s) 539, 1178
AciI CCGC 5 cut(s) 136, 693, 1092, 1127, 1622
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 2 cut(s) 133, 354
AcsI RAATTY 3 cut(s) 769, 817, 1260
AfaI GTAC 6 cut(s) 16, 101, 421, 1354, 1391, 1514
AfiI CCNNNNNNNGG 5 cut(s) 200, 201, 878, 1295, 1370
AflII CTTAAG 1 cut(s) 673
AjnI CCWGG 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 6 cut(s) 72, 509, 763, 898, 907, 1577
AlwI GGATC 1 cut(s) 575
AlwNI CAGNNNCTG 1 cut(s) 1355
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 5 cut(s) 133, 354, 685, 723, 1618
ApoI RAATTY 3 cut(s) 769, 817, 1260
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AspS9I GGNCC 4 cut(s) 269, 430, 724, 1619
AsuHPI GGTGA 2 cut(s) 641, 847
AsuNHI GCTAGC 1 cut(s) 637
AvaI CYCGRG 1 cut(s) 24
AvaII GGWCC 2 cut(s) 269, 430
AxyI CCTNAGG 1 cut(s) 1120
BanII GRGCYC 4 cut(s) 460, 885, 1147, 1194
BbsI GAAGAC 2 cut(s) 661, 1160
Bbv12I GWGCWC 1 cut(s) 460
BbvCI CCTCAGC 1 cut(s) 1557
BccI CCATC 7 cut(s) 62, 459, 536, 749, 903, 1143, 1501
BceAI ACGGC 4 cut(s) 191, 230, 1296, 1344
BcgI CGANNNNNNTGC 2 cut(s) 702, 736
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 1049
BcoDI GTCTC 6 cut(s) 72, 509, 763, 898, 907, 1577
BfaI CTAG 8 cut(s) 65, 150, 603, 638, 845, 1020, 1104, 1548
BfmI CTRYAG 1 cut(s) 179
BfrI CTTAAG 1 cut(s) 673
BfuI GTATCC 1 cut(s) 1049
BglI GCCNNNNNGGC 1 cut(s) 1151
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 2 cut(s) 269, 430
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 4 cut(s) 269, 430, 724, 1619
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 1 cut(s) 405
BmtI GCTAGC 1 cut(s) 641
BmuI ACTGGG 1 cut(s) 933
BpiI GAAGAC 2 cut(s) 661, 1160
Bpu10I CCTNAGC 2 cut(s) 1365, 1557
BpuEI CTTGAG 2 cut(s) 627, 666
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 1 cut(s) 872
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 201, 878, 1295, 1370
Bse118I RCCGGY 1 cut(s) 1414
Bse1I ACTGG 3 cut(s) 427, 939, 1524
Bse21I CCTNAGG 1 cut(s) 1120
Bse3DI GCAATG 1 cut(s) 1038
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 872
BseGI GGATG 2 cut(s) 284, 914
BseLI CCNNNNNNNGG 5 cut(s) 200, 201, 878, 1295, 1370
BseMI GCAATG 1 cut(s) 1038
BseMII CTCAG 3 cut(s) 421, 490, 1548
BseNI ACTGG 3 cut(s) 427, 939, 1524
BseRI GAGGAG 4 cut(s) 87, 90, 1311, 1574
BseYI CCCAGC 1 cut(s) 1136
BsgI GTGCAG 1 cut(s) 1341
Bsh1236I CGCG 2 cut(s) 539, 1178
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 5 cut(s) 135, 356, 687, 725, 1620
BsiEI CGRYCG 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 2 cut(s) 357, 1415
BslFI GGGAC 2 cut(s) 810, 1249
BslI CCNNNNNNNGG 5 cut(s) 200, 201, 878, 1295, 1370
BsmAI GTCTC 6 cut(s) 72, 509, 763, 898, 907, 1577
BsmFI GGGAC 2 cut(s) 810, 1249
BsnI GGCC 5 cut(s) 135, 356, 687, 725, 1620
Bso31I GGTCTC 1 cut(s) 907
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 4 cut(s) 460, 885, 1147, 1194
Bsp1407I TGTACA 1 cut(s) 1512
Bsp143I GATC 2 cut(s) 580, 1636
BspACI CCGC 5 cut(s) 136, 693, 1092, 1127, 1622
BspANI GGCC 5 cut(s) 135, 356, 687, 725, 1620
BspCNI CTCAG 3 cut(s) 420, 489, 1549
BspFNI CGCG 2 cut(s) 539, 1178
BspHI TCATGA 1 cut(s) 1209
BspLI GGNNCC 1 cut(s) 432
BspOI GCTAGC 1 cut(s) 641
BspPI GGATC 1 cut(s) 575
BspQI GCTCTTC 3 cut(s) 329, 1199, 1546
BspTI CTTAAG 1 cut(s) 673
BspTNI GGTCTC 1 cut(s) 907
BsrDI GCAATG 1 cut(s) 1038
BsrFI RCCGGY 1 cut(s) 1414
BsrGI TGTACA 1 cut(s) 1512
BsrI ACTGG 3 cut(s) 427, 939, 1524
BssAI RCCGGY 1 cut(s) 1414
BssECI CCNNGG 1 cut(s) 872
BssMI GATC 2 cut(s) 580, 1636
BssT1I CCWWGG 1 cut(s) 872
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 4 cut(s) 19, 249, 472, 918
Bst6I CTCTTC 7 cut(s) 90, 234, 329, 1199, 1546, 1575, 1590
BstAFI CTTAAG 1 cut(s) 673
BstAUI TGTACA 1 cut(s) 1512
BstC8I GCNNGC 2 cut(s) 639, 1622
BstDEI CTNAG 7 cut(s) 328, 407, 476, 923, 1120, 1365, 1557
BstF5I GGATG 2 cut(s) 284, 914
BstFNI CGCG 2 cut(s) 539, 1178
BstKTI GATC 2 cut(s) 583, 1639
BstMAI GTCTC 6 cut(s) 72, 509, 763, 898, 907, 1577
BstMBI GATC 2 cut(s) 580, 1636
BstMCI CGRYCG 1 cut(s) 251
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 2 cut(s) 717, 1338
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 179
BstUI CGCG 2 cut(s) 539, 1178
BstV2I GAAGAC 2 cut(s) 661, 1160
BstX2I RGATCY 1 cut(s) 580
BstXI CCANNNNNNTGG 1 cut(s) 452
BstYI RGATCY 1 cut(s) 580
Bsu36I CCTNAGG 1 cut(s) 1120
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 5 cut(s) 135, 356, 687, 725, 1620
BtsCI GGATG 2 cut(s) 284, 914
BtsIMutI CAGTG 2 cut(s) 957, 1517
Cac8I GCNNGC 2 cut(s) 639, 1622
CaiI CAGNNNCTG 1 cut(s) 1355
CciI TCATGA 1 cut(s) 1209
Cfr10I RCCGGY 1 cut(s) 1414
Cfr13I GGNCC 4 cut(s) 269, 430, 724, 1619
Csp6I GTAC 6 cut(s) 15, 100, 420, 1353, 1390, 1513
CviAII CATG 6 cut(s) 103, 613, 714, 730, 1210, 1335
CviQI GTAC 6 cut(s) 15, 100, 420, 1353, 1390, 1513
DdeI CTNAG 7 cut(s) 328, 407, 476, 923, 1120, 1365, 1557
DpnI GATC 2 cut(s) 582, 1638
DpnII GATC 2 cut(s) 580, 1636
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 133, 354
Eam1104I CTCTTC 7 cut(s) 90, 234, 329, 1199, 1546, 1575, 1590
EarI CTCTTC 7 cut(s) 90, 234, 329, 1199, 1546, 1575, 1590
Ecl136II GAGCTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 872
Eco147I AGGCCT 1 cut(s) 687
Eco24I GRGCYC 4 cut(s) 460, 885, 1147, 1194
Eco31I GGTCTC 1 cut(s) 907
Eco47I GGWCC 2 cut(s) 269, 430
Eco53kI GAGCTC 1 cut(s) 458
Eco81I CCTNAGG 1 cut(s) 1120
Eco88I CYCGRG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 872
EcoT38I GRGCYC 4 cut(s) 460, 885, 1147, 1194
ErhI CCWWGG 1 cut(s) 872
FaeI CATG 6 cut(s) 106, 616, 717, 733, 1213, 1338
FaqI GGGAC 2 cut(s) 810, 1249
FatI CATG 6 cut(s) 102, 612, 713, 729, 1209, 1334
FauI CCCGC 2 cut(s) 1120, 1629
FauNDI CATATG 1 cut(s) 1441
FokI GGATG 2 cut(s) 271, 921
FriOI GRGCYC 4 cut(s) 460, 885, 1147, 1194
FspBI CTAG 8 cut(s) 65, 150, 603, 638, 845, 1020, 1104, 1548
GsaI CCCAGC 1 cut(s) 1140
HaeIII GGCC 5 cut(s) 135, 356, 687, 725, 1620
HapII CCGG 2 cut(s) 357, 1415
Hin1II CATG 6 cut(s) 106, 616, 717, 733, 1213, 1338
HincII GTYRAC 2 cut(s) 173, 1101
HindII GTYRAC 2 cut(s) 173, 1101
HindIII AAGCTT 2 cut(s) 447, 1367
HinfI GANTC 3 cut(s) 55, 666, 1341
HpaII CCGG 2 cut(s) 357, 1415
HphI GGTGA 2 cut(s) 641, 847
Hpy166II GTNNAC 8 cut(s) 173, 610, 1101, 1245, 1307, 1513, 1515, 1525
Hpy188I TCNGA 7 cut(s) 54, 60, 118, 212, 410, 1636, 1643
Hpy188III TCNNGA 7 cut(s) 24, 44, 490, 578, 1210, 1265, 1345
Hpy8I GTNNAC 8 cut(s) 173, 610, 1101, 1245, 1307, 1513, 1515, 1525
HpyAV CCTTC 6 cut(s) 17, 122, 496, 518, 776, 1641
HpyCH4III ACNGT 4 cut(s) 19, 249, 472, 918
HpyCH4IV ACGT 1 cut(s) 899
HpyCH4V TGCA 5 cut(s) 713, 733, 1334, 1358, 1430
HpyF3I CTNAG 7 cut(s) 328, 407, 476, 923, 1120, 1365, 1557
HpySE526I ACGT 1 cut(s) 899
Hsp92II CATG 6 cut(s) 106, 616, 717, 733, 1213, 1338
Kzo9I GATC 2 cut(s) 580, 1636
LguI GCTCTTC 3 cut(s) 329, 1199, 1546
LmnI GCTCC 3 cut(s) 455, 1373, 1561
LweI GCATC 1 cut(s) 405
MaeI CTAG 8 cut(s) 65, 150, 603, 638, 845, 1020, 1104, 1548
MaeII ACGT 1 cut(s) 899
MaeIII GTNAC 4 cut(s) 41, 243, 1007, 1473
MalI GATC 2 cut(s) 582, 1638
MboI GATC 2 cut(s) 580, 1636
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 4 cut(s) 460, 885, 1147, 1194
MlyI GAGTC 2 cut(s) 675, 1350
MmeI TCCRAC 1 cut(s) 1090
MseI TTAA 3 cut(s) 674, 1085, 1383
MslI CAYNNNNRTG 2 cut(s) 107, 538
MspCI CTTAAG 1 cut(s) 673
MspI CCGG 2 cut(s) 357, 1415
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 2 cut(s) 539, 1178
NdeI CATATG 1 cut(s) 1441
NdeII GATC 2 cut(s) 580, 1636
NheI GCTAGC 1 cut(s) 637
NlaIII CATG 6 cut(s) 106, 616, 717, 733, 1213, 1338
NlaIV GGNNCC 1 cut(s) 432
NmeAIII GCCGAG 2 cut(s) 701, 1166
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 2 cut(s) 717, 1338
PaeR7I CTCGAG 1 cut(s) 24
PagI TCATGA 1 cut(s) 1209
PceI AGGCCT 1 cut(s) 687
PciSI GCTCTTC 3 cut(s) 329, 1199, 1546
PfeI GAWTC 1 cut(s) 55
PleI GAGTC 2 cut(s) 674, 1349
PpsI GAGTC 2 cut(s) 674, 1349
PsiI TTATAA 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 460
Psp6I CCWGG 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 1136
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 4 cut(s) 269, 430, 724, 1619
PstNI CAGNNNCTG 1 cut(s) 1355
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 6 cut(s) 16, 101, 421, 1354, 1391, 1514
RsaNI GTAC 6 cut(s) 15, 100, 420, 1353, 1390, 1513
RseI CAYNNNNRTG 2 cut(s) 107, 538
SacI GAGCTC 1 cut(s) 460
SapI GCTCTTC 3 cut(s) 329, 1199, 1546
SaqAI TTAA 3 cut(s) 674, 1085, 1383
Sau3AI GATC 2 cut(s) 580, 1636
Sau96I GGNCC 4 cut(s) 269, 430, 724, 1619
SchI GAGTC 2 cut(s) 675, 1350
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 4 cut(s) 460, 885, 1147, 1194
SfaNI GCATC 1 cut(s) 405
SfcI CTRYAG 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 24
SinI GGWCC 2 cut(s) 269, 430
SlaI CTCGAG 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 107, 538
SmlI CTYRAG 4 cut(s) 24, 642, 673, 681
SmoI CTYRAG 4 cut(s) 24, 642, 673, 681
SseBI AGGCCT 1 cut(s) 687
SsiI CCGC 5 cut(s) 136, 693, 1092, 1127, 1622
SspI AATATT 3 cut(s) 388, 550, 1591
SspMI CTAG 8 cut(s) 65, 150, 603, 638, 845, 1020, 1104, 1548
SstI GAGCTC 1 cut(s) 460
StuI AGGCCT 1 cut(s) 687
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 872
TaaI ACNGT 4 cut(s) 19, 249, 472, 918
TaiI ACGT 1 cut(s) 902
TaqI TCGA 1 cut(s) 25
TaqII GACCGA 1 cut(s) 1154
TatI WGTACW 4 cut(s) 99, 419, 1389, 1512
TauI GCSGC 2 cut(s) 138, 1094
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 3 cut(s) 674, 1085, 1383
Tru9I TTAA 3 cut(s) 674, 1085, 1383
TscAI CASTG 2 cut(s) 957, 1524
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 7 cut(s) 105, 145, 990, 1198, 1266, 1458, 1623
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 957, 1524
Vha464I CTTAAG 1 cut(s) 673
VpaK11BI GGWCC 2 cut(s) 269, 430
XapI RAATTY 3 cut(s) 769, 817, 1260
XceI RCATGY 2 cut(s) 717, 1338
XcmI CCANNNNNNNNNTGG 1 cut(s) 564
XhoI CTCGAG 1 cut(s) 24
XspI CTAG 8 cut(s) 65, 150, 603, 638, 845, 1020, 1104, 1548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.