Rroxscaffold_7G00190230

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0020649
Physical Location & Seq
Forward (+)
30258376 .. 30259157
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190230.1

Sequence Viewer

Length: 696 bp
ATGTGCAAGCGTGAAAGAGATATCTGGAGATCATATAACGAGGCTTGCAAGAATGATGAGGCTTTCTTAACTGAATTAGGCAAGTTCCTCGAGTCGTATGAGAAATGTATGACTCAACTTAAGGGGATGGAAGAAAAAGGCAGAGGAAGTGATTTCAGCTACATGAGGAATATTTTAGAGGAACTGAAGCAGCATTCTGCTGCGGATCAAAGGTTGCTCGAAAAGGTTACACATTTGATCAACGAGCGAAACGTTATGCATGATGAATTGACAAGGCAAAATAAGAAGCCTGGCAAGAAGTATGGTTGTGCTCGTGCTTGGAGACGCTGTTTGAGGATGGTCACTTATGTTGTGTTCATTGGTGCTGTGGCTGCTGAATTTGCTTGCACAGTTATGGCCGCAGTTCTGGCTGCTCCACTTATTGCTCTAGCCATTGCTGCTGTTATTATCCCAACACTAGCCGGACAACACTGGACTCTATCTTGGATTAAAGAATCTCCTTTTTCAGAATCAGGACAATACATAAACTCACTCTTGGACCTTCTGAACTCTGTAATTGAGGGAGAAGACGACTTCACTATGGAAGAGATCGAGAGTCCACTGAAGAACCTTAATGATTTGAAGGAAAGAGCAAGGAATTGTAAGTCCATGATATTGAAGGCAAGAGATGAGGTGTCTAAGAAACTGCGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

231

Amino Acids

26.53

Weight (kDa)

8.41

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 48 - 161 8e-07 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020649)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013219
rosa_multiflora Rmu_sc0000258.1_g000065
rosa_roxburghii Rroxscaffold_7G00189990 Rroxscaffold_7G00190230
rosa_samantha Rh6BG231400
rosa_wichuraiana Rw6G019860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 203, 399
AclI AACGTT 1 cut(s) 252
AclWI GGATC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 2 cut(s) 206, 623
AflII CTTAAG 1 cut(s) 119
AgsI TTSAA 2 cut(s) 622, 658
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 5 cut(s) 190, 200, 371, 410, 437
ApoI RAATTY 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 538
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 538
BauI CACGAG 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 573
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 5 cut(s) 187, 202, 358, 397, 424
BccI CCATC 2 cut(s) 121, 331
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 316
BfaI CTAG 2 cut(s) 428, 458
BfrI CTTAAG 1 cut(s) 119
BisI GCNGC 6 cut(s) 191, 201, 372, 399, 411, 438
BlsI GCNGC 6 cut(s) 192, 202, 373, 400, 412, 439
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 538
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 538
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 573
BpmI CTGGAG 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
Bse1I ACTGG 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 2 cut(s) 132, 342
BseMI GCAATG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 476
BseXI GCAGC 5 cut(s) 187, 202, 358, 397, 424
BshFI GGCC 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 462
BsmAI GTCTC 1 cut(s) 316
BsmBI CGTCTC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 4 cut(s) 29, 205, 237, 588
BspACI CCGC 2 cut(s) 203, 399
BspANI GGCC 1 cut(s) 398
BspPI GGATC 1 cut(s) 213
BspTI CTTAAG 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 432
BsrI ACTGG 1 cut(s) 476
BssMI GATC 4 cut(s) 29, 205, 237, 588
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 1 cut(s) 579
BstAFI CTTAAG 1 cut(s) 119
BstC8I GCNNGC 3 cut(s) 8, 46, 385
BstDEI CTNAG 1 cut(s) 678
BstF5I GGATG 2 cut(s) 132, 342
BstKTI GATC 4 cut(s) 32, 208, 240, 591
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 4 cut(s) 29, 205, 237, 588
BstMWI GCNNNNNNNGC 4 cut(s) 371, 380, 407, 437
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 5 cut(s) 187, 202, 358, 397, 424
BstV2I GAAGAC 1 cut(s) 573
BsuRI GGCC 1 cut(s) 398
BtsCI GGATG 2 cut(s) 132, 342
BtsIMutI CAGTG 2 cut(s) 469, 599
Cac8I GCNNGC 3 cut(s) 8, 46, 385
Cfr13I GGNCC 1 cut(s) 538
CseI GACGC 1 cut(s) 333
CviAII CATG 3 cut(s) 163, 260, 649
CviJI RGCY 9 cut(s) 44, 62, 159, 289, 371, 398, 410, 431, 461
CviKI_1 RGCY 9 cut(s) 44, 62, 159, 289, 371, 398, 410, 431, 461
DdeI CTNAG 1 cut(s) 678
DpnI GATC 4 cut(s) 31, 207, 239, 590
DpnII GATC 4 cut(s) 29, 205, 237, 588
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 538
Eco57I CTGAAG 2 cut(s) 206, 623
Eco88I CYCGRG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 3 cut(s) 166, 263, 652
FatI CATG 3 cut(s) 162, 259, 648
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 6 cut(s) 191, 201, 372, 399, 411, 438
FokI GGATG 2 cut(s) 139, 349
Fsp4HI GCNGC 6 cut(s) 191, 201, 372, 399, 411, 438
FspBI CTAG 2 cut(s) 428, 458
GluI GCNGC 6 cut(s) 191, 201, 372, 399, 411, 438
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 398
HapII CCGG 1 cut(s) 462
HgaI GACGC 1 cut(s) 333
Hin1II CATG 3 cut(s) 166, 263, 652
HinfI GANTC 6 cut(s) 92, 112, 475, 494, 509, 595
HpaII CCGG 1 cut(s) 462
Hpy166II GTNNAC 1 cut(s) 599
Hpy188I TCNGA 2 cut(s) 508, 546
Hpy188III TCNNGA 3 cut(s) 25, 513, 592
Hpy8I GTNNAC 1 cut(s) 599
HpyAV CCTTC 3 cut(s) 551, 616, 652
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 4 cut(s) 6, 48, 259, 387
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 380, 407, 437
HpyF3I CTNAG 1 cut(s) 678
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 3 cut(s) 166, 263, 652
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 4 cut(s) 29, 205, 237, 588
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 7 cut(s) 10, 276, 303, 392, 457, 475, 498
Lsp1109I GCAGC 5 cut(s) 187, 202, 358, 397, 424
MaeI CTAG 2 cut(s) 428, 458
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 226, 340
MalI GATC 4 cut(s) 31, 207, 239, 590
MboI GATC 4 cut(s) 29, 205, 237, 588
MboII GAAGA 4 cut(s) 143, 578, 596, 616
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 5 cut(s) 74, 266, 377, 555, 637
MlyI GAGTC 4 cut(s) 101, 106, 469, 604
MnlI CCTC 9 cut(s) 34, 52, 98, 137, 159, 172, 327, 553, 664
Mph1103I ATGCAT 1 cut(s) 261
MseI TTAA 4 cut(s) 68, 120, 489, 612
MslI CAYNNNNRTG 1 cut(s) 392
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 371, 380, 407, 437
NdeII GATC 4 cut(s) 29, 205, 237, 588
NlaIII CATG 3 cut(s) 166, 263, 652
NmuCI GTSAC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 261
PaeR7I CTCGAG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 494, 509
PkrI GCNGC 6 cut(s) 192, 202, 373, 400, 412, 439
PleI GAGTC 4 cut(s) 100, 106, 469, 603
PpsI GAGTC 4 cut(s) 100, 106, 469, 603
Psp1406I AACGTT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 1 cut(s) 538
PspXI VCTCGAGB 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 4 cut(s) 68, 120, 489, 612
SatI GCNGC 6 cut(s) 191, 201, 372, 399, 411, 438
Sau3AI GATC 4 cut(s) 29, 205, 237, 588
Sau96I GGNCC 1 cut(s) 538
SchI GAGTC 4 cut(s) 101, 106, 469, 604
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 313
SetI ASST 7 cut(s) 161, 215, 228, 255, 543, 612, 675
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 1 cut(s) 538
SlaI CTCGAG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 89, 119
SmoI CTYRAG 2 cut(s) 89, 119
Sse9I AATT 5 cut(s) 74, 266, 377, 555, 637
SsiI CCGC 2 cut(s) 203, 399
SspI AATATT 1 cut(s) 172
SspMI CTAG 2 cut(s) 428, 458
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 90, 219, 591
TasI AATT 5 cut(s) 74, 266, 377, 555, 637
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 2 cut(s) 494, 509
Tru1I TTAA 4 cut(s) 68, 120, 489, 612
Tru9I TTAA 4 cut(s) 68, 120, 489, 612
TscAI CASTG 2 cut(s) 476, 606
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 5 cut(s) 190, 200, 371, 410, 437
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 279, 346
TspRI CASTG 2 cut(s) 476, 606
Vha464I CTTAAG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 538
XapI RAATTY 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 2 cut(s) 428, 458
Zsp2I ATGCAT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.