Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007410

Physical Location & Seq

Genomic Coordinates Reverse (-)

40729083 .. 40729871

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCCGCCACCACCAACGAGCTCAAGGAAAGCTGGTTCATGCTTATGGATTACAAATCGGAGAGGCATGGAATATTGGCCGTCCCCACAGAAGAAAACAAATACATGATTCGCTCTTCAAGCTCGAGGAAAAGAACTACAGCAAAAGCTCCATTTCAAACTCCTTTGGATCTTCAGCTTCCACGGAGCTATGAGAAATTAGTGGTTCACACCTTGACTCACTATTTCCGTAATGCTACCCGTATAGTTCATGCACCTTTGAGGTTACCGATTGGACCACATCATGTTCTTGTGAAAATCATTTATGCTGGCGTAAATGCAAGTGATTTCACTGGAGCGGACAAAGGCCCCCATCTTCCATTTGATGCTGGTTTTGAGGCTGTGGGTATAATTGCGGCAGAAGGGGAATCTGTCACTAACTTGGAAATTGGTACTCCTGCATCAATCATGACTTTTGGAAGTTATGCTGAATTCACAATGGTGCCTTCAAAACATATCCTTCCTATGGAAAGACCAGATCCAGAAGTTGTTGCTATGCTTACTTCAGGACTAACAGCATCAATTGCTCTAGAAAAGGCTGGTGGACAATTGGAATCTGGAAAAGTAGTTCTTGTTACTGCTGCTGCTGGAGGGACTGGGCAATTTGCAGACCAGCTTGCAAAACTAGCTGGGAATAAAGTGGTTGCAACTTGTGGAGGTGCAGACAAGACAAAGCTTTTAAAAGAATTGGGGAGTGTTGTTGTTCCATTGGAGGTGGGAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

ADH_N ADH_zinc_N adh_short

Protein Analysis

254

Amino Acids

27.14

Weight (kDa)

7.11

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	92 - 169	8.2e-10	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49670 AT1G49670
fragaria_vesca	FvH4_2g06260 FvH4_2g06260
malus_domestica	MD05G1079300.v1.1
prunus_persica	Prupe.8G123100_v2.0.a1 Prupe.8G123100_v2.0.a1 Prupe.8G123100_v2.0.a1 Prupe.8G123200_v2.0.a1 Prupe.8G123200_v2.0.a1 Prupe.8G123200_v2.0.a1 Prupe.8G123200_v2.0.a1
pyrus_communis	pycom05g07240
rosa_chinensis	RchiOBHm_Chr6g0256921
rosa_laevigata	RLG00000014657
rosa_multiflora	Rmu_sc0003076.1_g000031
rosa_roxburghii	Rroxscaffold_7G00197020 Rroxscaffold_7G00208300
rosa_rugosa	Rorug05G0576800 Rorug05G0576900
rosa_samantha	Rh6AG095600 Rh6BG086400 Rh6CG082700 Rh6DG078400
rosa_wichuraiana	Rw6G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	338
AciI	CCGC	3 cut(s)	6, 338, 395
AclWI	GGATC	2 cut(s)	177, 512
AcoI	YGGCCR	2 cut(s)	3, 78
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	2 cut(s)	158, 528
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	120, 158, 489
AleI	CACNNNNGTG	1 cut(s)	479
AloI	GAACNNNNNNTCC	4 cut(s)	20, 52, 591, 623
AluBI	AGCT	9 cut(s)	22, 33, 123, 149, 178, 189, 655, 668, 715
AluI	AGCT	9 cut(s)	22, 33, 123, 149, 178, 189, 655, 668, 715
Alw21I	GWGCWC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	177, 512
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	3 cut(s)	3, 78, 346
ApeKI	GCWGC	2 cut(s)	620, 623
ApoI	RAATTY	1 cut(s)	470
AspS9I	GGNCC	2 cut(s)	275, 347
AvaI	CYCGRG	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	607, 610
BccI	CCATC	1 cut(s)	360
BceAI	ACGGC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	569, 665
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	4 cut(s)	6, 396, 621, 624
BlsI	GCNGC	4 cut(s)	7, 397, 622, 625
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	275, 347
BmiI	GGNNCC	2 cut(s)	349, 483
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	3 cut(s)	355, 449, 566
BmuI	ACTGGG	1 cut(s)	645
BpmI	CTGGAG	2 cut(s)	354, 648
BpuEI	CTTGAG	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse1I	ACTGG	2 cut(s)	337, 640
BseDI	CCNNGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseNI	ACTGG	2 cut(s)	337, 640
BseXI	GCAGC	2 cut(s)	607, 610
BseYI	CCCAGC	1 cut(s)	668
BsgI	GTGCAG	1 cut(s)	720
BshFI	GGCC	3 cut(s)	5, 80, 348
BshNI	GGYRCC	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	124
BslFI	GGGAC	2 cut(s)	68, 646
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmFI	GGGAC	2 cut(s)	68, 646
BsnI	GGCC	3 cut(s)	5, 80, 348
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	169, 517
BspACI	CCGC	3 cut(s)	6, 338, 395
BspANI	GGCC	3 cut(s)	5, 80, 348
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	349, 483
BspPI	GGATC	2 cut(s)	177, 512
BspQI	GCTCTTC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	481
BsrBI	CCGCTC	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	337, 640
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	2 cut(s)	169, 517
Bst6I	CTCTTC	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	310, 657
BstDSI	CCRYGG	1 cut(s)	182
BstEII	GGTNACC	1 cut(s)	264
BstKTI	GATC	2 cut(s)	172, 520
BstMBI	GATC	2 cut(s)	169, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 563, 665
BstPI	GGTNACC	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	607, 610
BstX2I	RGATCY	2 cut(s)	169, 517
BstYI	RGATCY	2 cut(s)	169, 517
BsuRI	GGCC	3 cut(s)	5, 80, 348
BtgI	CCRYGG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	310, 657
CciI	TCATGA	1 cut(s)	447
Cfr13I	GGNCC	2 cut(s)	275, 347
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	6 cut(s)	40, 68, 106, 251, 284, 448
CviQI	GTAC	1 cut(s)	432
DpnI	GATC	2 cut(s)	171, 519
DpnII	GATC	2 cut(s)	169, 517
DraI	TTTAAA	1 cut(s)	720
EaeI	YGGCCR	2 cut(s)	3, 78
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	158, 528
Eco88I	CYCGRG	1 cut(s)	124
Eco91I	GGTNACC	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	264
EcoRI	GAATTC	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	6 cut(s)	43, 71, 109, 254, 287, 451
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	2 cut(s)	68, 646
FatI	CATG	6 cut(s)	39, 67, 105, 250, 283, 447
Fnu4HI	GCNGC	4 cut(s)	6, 396, 621, 624
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	4 cut(s)	6, 396, 621, 624
FspBI	CTAG	2 cut(s)	569, 665
GluI	GCNGC	4 cut(s)	6, 396, 621, 624
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	2 cut(s)	354, 648
HaeIII	GGCC	3 cut(s)	5, 80, 348
Hin1II	CATG	6 cut(s)	43, 71, 109, 254, 287, 451
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	4 cut(s)	109, 217, 407, 593
Hpy166II	GTNNAC	2 cut(s)	208, 584
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	5 cut(s)	448, 521, 546, 569, 597
Hpy8I	GTNNAC	2 cut(s)	208, 584
HpyAV	CCTTC	3 cut(s)	395, 495, 509
HpyCH4IV	ACGT	1 cut(s)	761
HpyCH4V	TGCA	7 cut(s)	254, 320, 440, 647, 659, 686, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 563, 665
HpySE526I	ACGT	1 cut(s)	761
Hsp92II	CATG	6 cut(s)	43, 71, 109, 254, 287, 451
Kzo9I	GATC	2 cut(s)	169, 517
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	3 cut(s)	154, 186, 335
Lsp1109I	GCAGC	2 cut(s)	607, 610
LweI	GCATC	3 cut(s)	355, 449, 566
MaeI	CTAG	2 cut(s)	569, 665
MaeII	ACGT	1 cut(s)	761
MaeIII	GTNAC	3 cut(s)	264, 412, 613
MalI	GATC	2 cut(s)	171, 519
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	2 cut(s)	169, 517
MboII	GAAGA	4 cut(s)	104, 108, 164, 347
MfeI	CAATTG	2 cut(s)	561, 587
MflI	RGATCY	2 cut(s)	169, 517
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	8 cut(s)	197, 390, 426, 470, 561, 587, 641, 725
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	7 cut(s)	57, 120, 255, 370, 623, 689, 745
MseI	TTAA	1 cut(s)	719
MslI	CAYNNNNRTG	2 cut(s)	44, 479
MunI	CAATTG	2 cut(s)	561, 587
MwoI	GCNNNNNNNGC	3 cut(s)	120, 563, 665
NdeII	GATC	2 cut(s)	169, 517
NlaIII	CATG	6 cut(s)	43, 71, 109, 254, 287, 451
NlaIV	GGNNCC	2 cut(s)	349, 483
NmuCI	GTSAC	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	479
PaeR7I	CTCGAG	1 cut(s)	124
PagI	TCATGA	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	109, 407, 593
PkrI	GCNGC	4 cut(s)	7, 397, 622, 625
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	668
PspN4I	GGNNCC	2 cut(s)	349, 483
PspPI	GGNCC	2 cut(s)	275, 347
PspXI	VCTCGAGB	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	169, 517
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	2 cut(s)	44, 479
SacI	GAGCTC	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	4 cut(s)	6, 396, 621, 624
Sau3AI	GATC	2 cut(s)	169, 517
Sau96I	GGNCC	2 cut(s)	275, 347
SchI	GAGTC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	3 cut(s)	355, 449, 566
SfcI	CTRYAG	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	124
SmiMI	CAYNNNNRTG	2 cut(s)	44, 479
SmlI	CTYRAG	2 cut(s)	23, 124
SmoI	CTYRAG	2 cut(s)	23, 124
Sse9I	AATT	8 cut(s)	197, 390, 426, 470, 561, 587, 641, 725
SsiI	CCGC	3 cut(s)	6, 338, 395
SspI	AATATT	1 cut(s)	75
SspMI	CTAG	2 cut(s)	569, 665
SstI	GAGCTC	1 cut(s)	24
TaiI	ACGT	1 cut(s)	764
TaqI	TCGA	1 cut(s)	125
TasI	AATT	8 cut(s)	197, 390, 426, 470, 561, 587, 641, 725
TauI	GCSGC	2 cut(s)	8, 398
TfiI	GAWTC	3 cut(s)	109, 407, 593
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	620, 623
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	28, 239
TspGWI	ACGGA	2 cut(s)	199, 218
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	470
XbaI	TCTAGA	1 cut(s)	568
XhoI	CTCGAG	1 cut(s)	124
XspI	CTAG	2 cut(s)	569, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.