Rorug05G0576900

Zinc-binding alcohol dehydrogenase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007410
Physical Location & Seq
Forward (+)
77331218 .. 77331703
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0576900.1

Sequence Viewer

Length: 486 bp
ATGGCCAATCGCTTCCTTGTCCTCCTTCTCATATTCTCTAGTTTTTCTATAAACATTCACGCATGCAACCAAACTGAACGCAGCTCTCTTCAGTCCTTTGCCCTCACTTTGTCAACTTCAACTCCTCTAAATTGGACTTCCGGTGAGTGCTGCCGCTGGGAGGGCATCTCTTGTAATCCGGGTGGTTCGGTCACTCATTTGAGCTTACCCTCCAAAGGCCTCAAACTCAAAGGAGGTAATTTTCCTTCTTCATCACTTGAAAATCTCCCGCATCTCACCCACCTCAACCTCTCCCATAATTCATTTTATGGTTCGATAGAGCTAAGTAATGGCTTCTTCTTGTCCTTGAGTCATCTTGAGGTCCTTGATTTGAGCTATAACCTTCTCTCCGGAGAGCTACCACTTTCTCTGCCATCCATCAATATTCAGATTGTGGATTTGTCCAACAATAACTTTCATGGTGCAATTCCATCTTCATTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
ADH_N ADH_zinc_N adh_short

Protein Analysis

161

Amino Acids

17.54

Weight (kDa)

6.12

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 24 - 59 3.9e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 389
AciI CCGC 2 cut(s) 154, 269
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 160, 215
AgsI TTSAA 2 cut(s) 120, 260
AluBI AGCT 5 cut(s) 84, 204, 322, 375, 397
AluI AGCT 5 cut(s) 84, 204, 322, 375, 397
Aor13HI TCCGGA 1 cut(s) 389
AoxI GGCC 2 cut(s) 3, 217
ApeKI GCWGC 2 cut(s) 81, 150
AspS9I GGNCC 1 cut(s) 361
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 155, 268
AvaII GGWCC 1 cut(s) 361
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BbvI GCAGC 2 cut(s) 93, 137
BccI CCATC 3 cut(s) 421, 425, 478
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 39
BisI GCNGC 3 cut(s) 82, 151, 154
BlsI GCNGC 3 cut(s) 83, 152, 155
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 174, 280
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpuEI CTTGAG 2 cut(s) 367, 377
BpuMI CCSGG 1 cut(s) 180
BsaWI WCCGGW 2 cut(s) 140, 389
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 215
BseAI TCCGGA 1 cut(s) 389
BseGI GGATG 1 cut(s) 413
BseLI CCNNNNNNNGG 2 cut(s) 160, 215
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 93, 137
BseYI CCCAGC 1 cut(s) 156
BshFI GGCC 2 cut(s) 5, 219
BsiSI CCGG 3 cut(s) 141, 179, 390
BslI CCNNNNNNNGG 2 cut(s) 160, 215
BsnI GGCC 2 cut(s) 5, 219
Bsp13I TCCGGA 1 cut(s) 389
BspACI CCGC 2 cut(s) 154, 269
BspANI GGCC 2 cut(s) 5, 219
BspEI TCCGGA 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 323
BstF5I GGATG 1 cut(s) 413
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 93, 137
BsuRI GGCC 2 cut(s) 5, 219
BtsCI GGATG 1 cut(s) 413
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 361
CviAII CATG 2 cut(s) 63, 458
CviJI RGCY 8 cut(s) 5, 84, 204, 219, 322, 333, 375, 397
CviKI_1 RGCY 8 cut(s) 5, 84, 204, 219, 322, 333, 375, 397
DdeI CTNAG 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 361
FaeI CATG 2 cut(s) 66, 461
FaiI YATR 7 cut(s) 32, 50, 64, 297, 309, 378, 459
FatI CATG 2 cut(s) 62, 457
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 82, 151, 154
FokI GGATG 1 cut(s) 400
Fsp4HI GCNGC 3 cut(s) 82, 151, 154
FspBI CTAG 1 cut(s) 39
GluI GCNGC 3 cut(s) 82, 151, 154
GsaI CCCAGC 1 cut(s) 160
HaeIII GGCC 2 cut(s) 5, 219
HapII CCGG 3 cut(s) 141, 179, 390
Hin1II CATG 2 cut(s) 66, 461
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HinfI GANTC 1 cut(s) 349
HpaII CCGG 3 cut(s) 141, 179, 390
HphI GGTGA 2 cut(s) 155, 268
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 429
Hpy188III TCNNGA 2 cut(s) 356, 390
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 3 cut(s) 35, 255, 392
HpyCH4V TGCA 2 cut(s) 66, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 323
Hsp92II CATG 2 cut(s) 66, 461
Kpn2I TCCGGA 1 cut(s) 389
LpnPI CCDG 4 cut(s) 142, 154, 192, 403
Lsp1109I GCAGC 2 cut(s) 93, 137
LweI GCATC 2 cut(s) 174, 280
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 190
MboII GAAGA 4 cut(s) 80, 240, 328, 465
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 130, 238, 298, 465
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 468
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 389
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 3 cut(s) 141, 179, 390
MspR9I CCNGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 180
NlaIII CATG 2 cut(s) 66, 461
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 66
PaeI GCATGC 1 cut(s) 66
PceI AGGCCT 1 cut(s) 219
PkrI GCNGC 3 cut(s) 83, 152, 155
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
PpuMI RGGWCCY 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 361
PspPPI RGGWCCY 1 cut(s) 361
SatI GCNGC 3 cut(s) 82, 151, 154
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 180
SfaNI GCATC 2 cut(s) 174, 280
SinI GGWCC 1 cut(s) 361
SmlI CTYRAG 2 cut(s) 346, 356
SmoI CTYRAG 2 cut(s) 346, 356
SphI GCATGC 1 cut(s) 66
Sse9I AATT 4 cut(s) 130, 238, 298, 465
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 2 cut(s) 154, 269
SspI AATATT 1 cut(s) 424
SspMI CTAG 1 cut(s) 39
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 178
TaqI TCGA 1 cut(s) 314
TaqII GACCGA 1 cut(s) 178
TasI AATT 4 cut(s) 130, 238, 298, 465
TauI GCSGC 1 cut(s) 156
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 2 cut(s) 81, 150
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 4 cut(s) 240, 291, 446, 465
VpaK11BI GGWCC 1 cut(s) 361
XceI RCATGY 1 cut(s) 66
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.