Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007410

Physical Location & Seq

Genomic Coordinates Forward (+)

77325750 .. 77329547

Gene Structure 3798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0576800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCCTACTTCGGCTTTGGATAGGAAACAGTGTGGAGAGTTAGAGTTTGAGGATAACATCTTAAAAATTCGAAAAGTTTATGATGCTTTTCTAGCAGAGTTTCCTTTGTGTTATGGGTATTGGAAAAAGTATGCAGATCATGAGGCACGTTTTGGTGTTATTGATAAAGTTGTGGAGGTTTATGAACGAGCAATTCAAGCTATTACCTATTCAGTTGACATTTGGTTGCATTACTGCACATTTGCCACAACTACTTTTGGAGATCCAGACACTATCAGAAGGCTTTTTGAGCAAGGATTGGCGTATGTTGGAACAGATTACTTGTCCTTTCCTCTTTGGGATAGGTACATTGATTATGAATTTATGCAGCAAGCATGGAGCCAGCTTGTTGTGATCTACTCACGAATATTAGAGAATTCGTACCAACAACTGGATCGATATTTAAACAGGTTTTGCAACTGTTTTGTTTGTATTCCTGATGCCAATGGTTTTAACAATTTTAAGGAGTTAGCTGGAAGTCGGCCTCTCTCAGAATTGAGAACTGCTGAAGAAGCTGCTGCTGCAGCAGCAGCAAGTGCCACTTCAGAGGATGGTGTACAAGCAAACGGGGTCAGTTTGAAATCGGAAATTGAAGCAGAAAATATATCTACAGAACTATTTCATTTAGTGAAGTTCACAATGAAATCGTTGAGCTCAAGTGTGATATCAGCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

ADH_N ADH_zinc_N adh_short

Protein Analysis

238

Amino Acids

27.15

Weight (kDa)

4.79

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	14 - 151	7.6e-51	PRP39 N-terminal HAT repeat
Suf	PF05843	15 - 119	2.1e-10	Suppressor of forked protein (Suf)
HAT_PRP39_C	PF23241	40 - 101	2.7e-06	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49670 AT1G49670
fragaria_vesca	FvH4_2g06260 FvH4_2g06260
malus_domestica	MD05G1079300.v1.1
prunus_persica	Prupe.8G123100_v2.0.a1 Prupe.8G123100_v2.0.a1 Prupe.8G123100_v2.0.a1 Prupe.8G123200_v2.0.a1 Prupe.8G123200_v2.0.a1 Prupe.8G123200_v2.0.a1 Prupe.8G123200_v2.0.a1
pyrus_communis	pycom05g07240
rosa_chinensis	RchiOBHm_Chr6g0256921
rosa_laevigata	RLG00000014657
rosa_multiflora	Rmu_sc0003076.1_g000031
rosa_roxburghii	Rroxscaffold_7G00197020 Rroxscaffold_7G00208300
rosa_rugosa	Rorug05G0576800 Rorug05G0576900
rosa_samantha	Rh6AG095600 Rh6BG086400 Rh6CG082700 Rh6DG078400
rosa_wichuraiana	Rw6G008140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	430
AclWI	GGATC	2 cut(s)	257, 441
AcsI	RAATTY	3 cut(s)	66, 359, 415
AcuI	CTGAAG	2 cut(s)	567, 567
AfaI	GTAC	3 cut(s)	347, 422, 597
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	3 cut(s)	197, 619, 632
AluBI	AGCT	6 cut(s)	200, 385, 512, 554, 693, 710
AluI	AGCT	6 cut(s)	200, 385, 512, 554, 693, 710
Alw21I	GWGCWC	1 cut(s)	695
AlwI	GGATC	2 cut(s)	257, 441
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	7 cut(s)	367, 554, 557, 560, 563, 566, 569
ApoI	RAATTY	3 cut(s)	66, 359, 415
Asp700I	GAANNNNTTC	1 cut(s)	657
AsuII	TTCGAA	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	695
BbvI	GCAGC	7 cut(s)	379, 541, 544, 547, 575, 578, 581
BccI	CCATC	1 cut(s)	584
BfaI	CTAG	2 cut(s)	92, 715
BfmI	CTRYAG	2 cut(s)	561, 648
BisI	GCNGC	7 cut(s)	368, 555, 558, 561, 564, 567, 570
BlsI	GCNGC	7 cut(s)	369, 556, 559, 562, 565, 568, 571
BmiI	GGNNCC	1 cut(s)	380
BmsI	GCATC	2 cut(s)	73, 469
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	679
Bsa29I	ATCGAT	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	435
BseCI	ATCGAT	1 cut(s)	436
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	435
BseXI	GCAGC	7 cut(s)	379, 541, 544, 547, 575, 578, 581
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	523
BshVI	ATCGAT	1 cut(s)	436
BsiHKAI	GWGCWC	1 cut(s)	695
BslI	CCNNNNNNNGG	1 cut(s)	430
BsnI	GGCC	1 cut(s)	523
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	4 cut(s)	136, 262, 393, 433
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	1 cut(s)	542
BspDI	ATCGAT	1 cut(s)	436
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	380
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	2 cut(s)	257, 441
BspT104I	TTCGAA	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	435
BssMI	GATC	4 cut(s)	136, 262, 393, 433
Bst4CI	ACNGT	2 cut(s)	30, 461
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstAUI	TGTACA	1 cut(s)	595
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	372, 383
BstDEI	CTNAG	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	595
BstKTI	GATC	4 cut(s)	139, 265, 396, 436
BstMBI	GATC	4 cut(s)	136, 262, 393, 433
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 197, 289, 551, 560, 563, 566, 569, 575
BstSFI	CTRYAG	2 cut(s)	561, 648
BstV1I	GCAGC	7 cut(s)	379, 541, 544, 547, 575, 578, 581
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	523
BsuTUI	ATCGAT	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	372, 383
CciI	TCATGA	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	436
Csp6I	GTAC	3 cut(s)	346, 421, 596
CviAII	CATG	2 cut(s)	140, 375
CviQI	GTAC	3 cut(s)	346, 421, 596
DdeI	CTNAG	1 cut(s)	529
DpnI	GATC	4 cut(s)	138, 264, 395, 435
DpnII	GATC	4 cut(s)	136, 262, 393, 433
DraI	TTTAAA	1 cut(s)	444
Ecl136II	GAGCTC	1 cut(s)	693
Eco24I	GRGCYC	1 cut(s)	695
Eco32I	GATATC	1 cut(s)	705
Eco53kI	GAGCTC	1 cut(s)	693
Eco57I	CTGAAG	2 cut(s)	567, 567
EcoICRI	GAGCTC	1 cut(s)	693
EcoRI	GAATTC	1 cut(s)	415
EcoRV	GATATC	1 cut(s)	705
EcoT38I	GRGCYC	1 cut(s)	695
FaeI	CATG	2 cut(s)	143, 378
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FatI	CATG	2 cut(s)	139, 374
Fnu4HI	GCNGC	7 cut(s)	368, 555, 558, 561, 564, 567, 570
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	695
Fsp4HI	GCNGC	7 cut(s)	368, 555, 558, 561, 564, 567, 570
FspBI	CTAG	2 cut(s)	92, 715
GluI	GCNGC	7 cut(s)	368, 555, 558, 561, 564, 567, 570
HaeIII	GGCC	1 cut(s)	523
Hin1II	CATG	2 cut(s)	143, 378
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	217, 596, 675
Hpy188I	TCNGA	4 cut(s)	278, 532, 586, 625
Hpy188III	TCNNGA	4 cut(s)	140, 266, 402, 476
Hpy8I	GTNNAC	3 cut(s)	217, 596, 675
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	2 cut(s)	30, 461
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	6 cut(s)	134, 229, 237, 367, 456, 563
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 197, 289, 551, 560, 563, 566, 569, 575
HpyF3I	CTNAG	1 cut(s)	529
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	143, 378
Kzo9I	GATC	4 cut(s)	136, 262, 393, 433
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	6 cut(s)	279, 395, 416, 433, 489, 498
Lsp1109I	GCAGC	7 cut(s)	379, 541, 544, 547, 575, 578, 581
LweI	GCATC	2 cut(s)	73, 469
MaeI	CTAG	2 cut(s)	92, 715
MaeII	ACGT	1 cut(s)	148
MalI	GATC	4 cut(s)	138, 264, 395, 435
MboI	GATC	4 cut(s)	136, 262, 393, 433
MboII	GAAGA	1 cut(s)	560
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	695
MluCI	AATT	7 cut(s)	66, 192, 359, 415, 496, 533, 627
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	6 cut(s)	43, 136, 169, 342, 534, 580
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	4 cut(s)	62, 443, 492, 501
MwoI	GCNNNNNNNGC	9 cut(s)	92, 197, 289, 551, 560, 563, 566, 569, 575
NdeII	GATC	4 cut(s)	136, 262, 393, 433
NlaIII	CATG	2 cut(s)	143, 378
NlaIV	GGNNCC	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	70
PagI	TCATGA	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	657
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	7 cut(s)	369, 556, 559, 562, 565, 568, 571
Psp124BI	GAGCTC	1 cut(s)	695
PspN4I	GGNNCC	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	3 cut(s)	347, 422, 597
RsaNI	GTAC	3 cut(s)	346, 421, 596
SacI	GAGCTC	1 cut(s)	695
SaqAI	TTAA	4 cut(s)	62, 443, 492, 501
SatI	GCNGC	7 cut(s)	368, 555, 558, 561, 564, 567, 570
Sau3AI	GATC	4 cut(s)	136, 262, 393, 433
SduI	GDGCHC	1 cut(s)	695
SfaNI	GCATC	2 cut(s)	73, 469
SfcI	CTRYAG	2 cut(s)	561, 648
SfuI	TTCGAA	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	7 cut(s)	66, 192, 359, 415, 496, 533, 627
SspI	AATATT	1 cut(s)	408
SspMI	CTAG	2 cut(s)	92, 715
SstI	GAGCTC	1 cut(s)	695
TaaI	ACNGT	2 cut(s)	30, 461
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	70, 436
TasI	AATT	7 cut(s)	66, 192, 359, 415, 496, 533, 627
TatI	WGTACW	1 cut(s)	595
Tru1I	TTAA	4 cut(s)	62, 443, 492, 501
Tru9I	TTAA	4 cut(s)	62, 443, 492, 501
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	7 cut(s)	367, 554, 557, 560, 563, 566, 569
TspDTI	ATGAA	4 cut(s)	198, 372, 650, 695
TspRI	CASTG	1 cut(s)	35
Van91I	CCANNNNNTGG	1 cut(s)	430
XapI	RAATTY	3 cut(s)	66, 359, 415
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	2 cut(s)	92, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.