Rorug01G0055700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0019092
Physical Location & Seq
Reverse (-)
9146275 .. 9146716
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0055700.1

Sequence Viewer

Length: 210 bp
ATGGAGCGGTTCATCATCTCCGCCGAGCTCCTCAACCACCTGGTGTTCATTGAGCTCCTCAACAAGTCGGCACAGGAGTACGGCTACGAGCAGCGCGGCGTGCTCCAGATTCTCTGCCGGGCGGTGGTGTTCGAGCGCGTCCTCGAGACGCTCCGGCTGGGTCTACTATTAATTGTGGCGGTGGTGAAAACAAGGTGGGTGGGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.93

Weight (kDa)

7.94

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 1 - 51 3.8e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019092)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001512.1_g000002
rosa_rugosa Rorug01G0055700
rosa_samantha Rh1AG041900 Rh1BG039400 Rh1CG042900 Rh1DG023800 Rh1DG026200 Rh1DG026700 Rh1DG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 163
AccII CGCG 2 cut(s) 96, 138
AciI CCGC 5 cut(s) 7, 21, 96, 122, 179
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 124
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 2 cut(s) 28, 55
AluI AGCT 2 cut(s) 28, 55
Alw21I GWGCWC 3 cut(s) 30, 57, 105
Alw26I GTCTC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 91
AseI ATTAAT 1 cut(s) 170
AspLEI GCGC 2 cut(s) 96, 138
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 143
BanII GRGCYC 2 cut(s) 30, 57
Bbv12I GWGCWC 3 cut(s) 30, 57, 105
BbvI GCAGC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 2 cut(s) 92, 97
BlsI GCNGC 2 cut(s) 93, 98
Bme1390I CCNGG 2 cut(s) 41, 119
BmeT110I CYCGRG 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 41, 119
BpmI CTGGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 20, 47
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 157
Bsh1236I CGCG 2 cut(s) 96, 138
BsiHKAI GWGCWC 3 cut(s) 30, 57, 105
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 2 cut(s) 118, 154
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 30, 57, 105
BspACI CCGC 5 cut(s) 7, 21, 96, 122, 179
BspFNI CGCG 2 cut(s) 96, 138
BsrBI CCGCTC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 101
BstFNI CGCG 2 cut(s) 96, 138
BstHHI GCGC 2 cut(s) 96, 138
BstMAI GTCTC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 39, 117
BstUI CGCG 2 cut(s) 96, 138
BstV1I GCAGC 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 2 cut(s) 96, 138
CseI GACGC 2 cut(s) 127, 157
CsiI ACCWGGT 1 cut(s) 39
Csp6I GTAC 1 cut(s) 79
CspCI CAANNNNNGTGG 1 cut(s) 180
CviJI RGCY 4 cut(s) 28, 55, 84, 157
CviKI_1 RGCY 4 cut(s) 28, 55, 84, 157
CviQI GTAC 1 cut(s) 79
DraIII CACNNNGTG 1 cut(s) 43
EciI GGCGGA 1 cut(s) 10
Ecl136II GAGCTC 2 cut(s) 28, 55
Eco24I GRGCYC 2 cut(s) 30, 57
Eco53kI GAGCTC 2 cut(s) 28, 55
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 2 cut(s) 28, 55
EcoRII CCWGG 1 cut(s) 39
EcoT38I GRGCYC 2 cut(s) 30, 57
Esp3I CGTCTC 1 cut(s) 140
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 92, 97
FriOI GRGCYC 2 cut(s) 30, 57
Fsp4HI GCNGC 2 cut(s) 92, 97
GlaI GCGC 2 cut(s) 95, 137
GluI GCNGC 2 cut(s) 92, 97
GsaI CCCAGC 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 89
HapII CCGG 2 cut(s) 118, 154
HgaI GACGC 2 cut(s) 127, 157
HhaI GCGC 2 cut(s) 96, 138
Hin6I GCGC 2 cut(s) 94, 136
HinP1I GCGC 2 cut(s) 94, 136
HinfI GANTC 1 cut(s) 109
HpaII CCGG 2 cut(s) 118, 154
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 164
Hpy188III TCNNGA 2 cut(s) 106, 145
Hpy8I GTNNAC 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HspAI GCGC 2 cut(s) 94, 136
LmnI GCTCC 5 cut(s) 4, 33, 60, 108, 156
LpnPI CCDG 7 cut(s) 26, 53, 59, 119, 131, 143, 167
Lsp1109I GCAGC 1 cut(s) 103
MabI ACCWGGT 1 cut(s) 39
MbiI CCGCTC 1 cut(s) 7
MhlI GDGCHC 3 cut(s) 30, 57, 105
MluCI AATT 1 cut(s) 171
MnlI CCTC 4 cut(s) 41, 68, 152, 197
MseI TTAA 1 cut(s) 170
MspI CCGG 2 cut(s) 118, 154
MspR9I CCNGG 2 cut(s) 41, 119
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 2 cut(s) 96, 138
MwoI GCNNNNNNNGC 1 cut(s) 100
NciI CCSGG 1 cut(s) 119
NmeAIII GCCGAG 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 143
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 93, 98
PshBI ATTAAT 1 cut(s) 170
Psp124BI GAGCTC 2 cut(s) 30, 57
Psp6I CCWGG 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 157
PspGI CCWGG 1 cut(s) 39
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SacI GAGCTC 2 cut(s) 30, 57
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 2 cut(s) 92, 97
ScrFI CCNGG 2 cut(s) 41, 119
SduI GDGCHC 3 cut(s) 30, 57, 105
SetI ASST 4 cut(s) 30, 42, 57, 197
SexAI ACCWGGT 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 171
SsiI CCGC 5 cut(s) 7, 21, 96, 122, 179
SstI GAGCTC 2 cut(s) 30, 57
StyD4I CCNGG 2 cut(s) 39, 117
TaqI TCGA 2 cut(s) 132, 144
TasI AATT 1 cut(s) 171
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 37
VspI ATTAAT 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.