Rh1CG042900

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0019092
Physical Location & Seq
Reverse (-)
8020193 .. 8025674
5482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG042900.1

Sequence Viewer

Length: 894 bp
ATGACCTGCAAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATTGGTTCAGGGCATCAACAATCCCTCTCCAGGAGTGGCAGTCAGGATTCCTTTCTGCTAGGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGTATTACTTCATCTTTTGTTGACTTTTGATTTTTATAGTGGGGAATACGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAAATTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCGTTGGGTGACGTTACTGATGATGATGCCTGCTTTGAAAAAGCCCTAGAAGTCTCAAACGATAGGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGGAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTCGCCCTAGGGGCTGCTGCATTAAAGGCTCTAGAAGCTGCACGGAAGGTGTTGGATCTTACTAATAATAAGAGAAATGATGCTGAGTTATTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGAAGATAACTTTCTCATTTGTGGGACCACAAATGCAGCATCTGAGGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTCCTTGGAAAAGCGGGGAGTTTCGCAGACATGGAAGAACTTCAACATCTTAAAGCCTGCCTTGATGAAGTGAAGTTAAAACTTGATTGTGATAGTGTGGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

297

Amino Acids

32.82

Weight (kDa)

4.68

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019092)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001512.1_g000002
rosa_rugosa Rorug01G0055700
rosa_samantha Rh1AG041900 Rh1BG039400 Rh1CG042900 Rh1DG023800 Rh1DG026200 Rh1DG026700 Rh1DG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 360
AciI CCGC 4 cut(s) 140, 208, 448, 800
AclWI GGATC 1 cut(s) 612
AcsI RAATTY 2 cut(s) 238, 526
AdeI CACNNNGTG 1 cut(s) 464
AfiI CCNNNNNNNGG 2 cut(s) 78, 360
AgsI TTSAA 4 cut(s) 314, 404, 526, 830
AjnI CCWGG 2 cut(s) 77, 353
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 3 cut(s) 308, 587, 770
AluI AGCT 3 cut(s) 308, 587, 770
Alw21I GWGCWC 1 cut(s) 777
Alw26I GTCTC 2 cut(s) 424, 456
AlwI GGATC 1 cut(s) 612
AlwNI CAGNNNCTG 2 cut(s) 308, 746
Ama87I CYCGRG 2 cut(s) 438, 762
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 6 cut(s) 302, 305, 563, 566, 587, 740
ApoI RAATTY 2 cut(s) 238, 526
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
Asp700I GAANNNNTTC 1 cut(s) 825
AspA2I CCTAGG 1 cut(s) 556
AspS9I GGNCC 1 cut(s) 729
AsuHPI GGTGA 3 cut(s) 206, 386, 669
AvaI CYCGRG 2 cut(s) 438, 762
AvaII GGWCC 1 cut(s) 729
AvrII CCTAGG 1 cut(s) 556
Bbv12I GWGCWC 1 cut(s) 777
BbvI GCAGC 6 cut(s) 314, 317, 550, 553, 574, 752
BccI CCATC 2 cut(s) 35, 536
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 2 cut(s) 79, 355
BciVI GTATCC 1 cut(s) 546
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 2 cut(s) 424, 456
BfaI CTAG 4 cut(s) 107, 413, 557, 581
BfmI CTRYAG 2 cut(s) 124, 280
BfuAI ACCTGC 1 cut(s) 14
BfuI GTATCC 1 cut(s) 546
BglI GCCNNNNNGGC 1 cut(s) 560
BisI GCNGC 6 cut(s) 303, 306, 564, 567, 588, 741
BlnI CCTAGG 1 cut(s) 556
BlpI GCTNAGC 2 cut(s) 444, 771
BlsI GCNGC 6 cut(s) 304, 307, 565, 568, 589, 742
Bme1390I CCNGG 2 cut(s) 79, 355
Bme18I GGWCC 1 cut(s) 729
BmeT110I CYCGRG 2 cut(s) 438, 762
BmgT120I GGNCC 1 cut(s) 729
BmiI GGNNCC 1 cut(s) 730
BmrFI CCNGG 2 cut(s) 79, 355
BmsI GCATC 4 cut(s) 70, 382, 619, 752
BpmI CTGGAG 1 cut(s) 61
Bpu1102I GCTNAGC 2 cut(s) 444, 771
BsaBI GATNNNNATC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 3 cut(s) 353, 556, 790
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 216, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 360
Bse3DI GCAATG 2 cut(s) 522, 699
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 2 cut(s) 79, 355
BseDI CCNNGG 3 cut(s) 353, 556, 790
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 78, 360
BseMI GCAATG 2 cut(s) 522, 699
BseMII CTCAG 3 cut(s) 624, 738, 762
BseXI GCAGC 6 cut(s) 314, 317, 550, 553, 574, 752
BsgI GTGCAG 1 cut(s) 573
BshFI GGCC 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 777
BsiHKCI CYCGRG 2 cut(s) 438, 762
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 2 cut(s) 78, 360
BsmAI GTCTC 2 cut(s) 424, 456
BsmFI GGGAC 1 cut(s) 742
BsnI GGCC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 2 cut(s) 438, 762
Bsp1286I GDGCHC 1 cut(s) 777
Bsp143I GATC 2 cut(s) 318, 604
Bsp1720I GCTNAGC 2 cut(s) 444, 771
BspACI CCGC 4 cut(s) 140, 208, 448, 800
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 3 cut(s) 625, 739, 763
BspLI GGNNCC 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 612
BspTNI GGTCTC 1 cut(s) 456
BsrDI GCAATG 2 cut(s) 522, 699
BssECI CCNNGG 3 cut(s) 353, 556, 790
BssMI GATC 2 cut(s) 318, 604
BssT1I CCWWGG 2 cut(s) 556, 790
Bst2UI CCWGG 2 cut(s) 79, 355
Bst4CI ACNGT 2 cut(s) 128, 194
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 3 cut(s) 397, 460, 844
BstDEI CTNAG 5 cut(s) 444, 633, 747, 771, 778
BstKTI GATC 2 cut(s) 321, 607
BstMAI GTCTC 2 cut(s) 424, 456
BstMBI GATC 2 cut(s) 318, 604
BstMWI GCNNNNNNNGC 4 cut(s) 464, 560, 575, 584
BstNI CCWGG 2 cut(s) 79, 355
BstSCI CCNGG 2 cut(s) 77, 353
BstSFI CTRYAG 2 cut(s) 124, 280
BstV1I GCAGC 6 cut(s) 314, 317, 550, 553, 574, 752
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BsuI GTATCC 1 cut(s) 546
BsuRI GGCC 1 cut(s) 521
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 469
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 3 cut(s) 397, 460, 844
CaiI CAGNNNCTG 2 cut(s) 308, 746
Cfr13I GGNCC 1 cut(s) 729
CviAII CATG 2 cut(s) 670, 817
DdeI CTNAG 5 cut(s) 444, 633, 747, 771, 778
DpnI GATC 2 cut(s) 320, 606
DpnII GATC 2 cut(s) 318, 604
DraIII CACNNNGTG 1 cut(s) 464
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eco130I CCWWGG 2 cut(s) 556, 790
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 729
Eco88I CYCGRG 2 cut(s) 438, 762
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 77, 353
EcoT14I CCWWGG 2 cut(s) 556, 790
ErhI CCWWGG 2 cut(s) 556, 790
FaeI CATG 2 cut(s) 673, 820
FalI AAGNNNNNCTT 6 cut(s) 135, 167, 658, 690, 831, 863
FaqI GGGAC 1 cut(s) 742
FatI CATG 2 cut(s) 669, 816
FauI CCCGC 1 cut(s) 793
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 6 cut(s) 303, 306, 564, 567, 588, 741
Fsp4HI GCNGC 6 cut(s) 303, 306, 564, 567, 588, 741
FspBI CTAG 4 cut(s) 107, 413, 557, 581
GluI GCNGC 6 cut(s) 303, 306, 564, 567, 588, 741
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 1 cut(s) 521
Hin1II CATG 2 cut(s) 673, 820
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 2 cut(s) 95, 509
HphI GGTGA 3 cut(s) 206, 386, 669
Hpy166II GTNNAC 2 cut(s) 165, 197
Hpy188I TCNGA 3 cut(s) 219, 337, 748
Hpy188III TCNNGA 5 cut(s) 92, 322, 539, 581, 764
Hpy8I GTNNAC 2 cut(s) 165, 197
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 2 cut(s) 128, 194
HpyCH4IV ACGT 2 cut(s) 26, 378
HpyCH4V TGCA 8 cut(s) 9, 30, 458, 467, 515, 569, 590, 740
HpyF10VI GCNNNNNNNGC 4 cut(s) 464, 560, 575, 584
HpyF3I CTNAG 5 cut(s) 444, 633, 747, 771, 778
HpySE526I ACGT 2 cut(s) 26, 378
Hsp92II CATG 2 cut(s) 673, 820
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 2 cut(s) 318, 604
Lsp1109I GCAGC 6 cut(s) 314, 317, 550, 553, 574, 752
LweI GCATC 4 cut(s) 70, 382, 619, 752
MaeI CTAG 4 cut(s) 107, 413, 557, 581
MaeII ACGT 2 cut(s) 26, 378
MaeIII GTNAC 3 cut(s) 12, 374, 379
MalI GATC 2 cut(s) 320, 606
MboI GATC 2 cut(s) 318, 604
MboII GAAGA 2 cut(s) 719, 833
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 1 cut(s) 777
MluCI AATT 5 cut(s) 238, 254, 526, 648, 685
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 5 cut(s) 83, 220, 238, 652, 742
MroXI GAANNNNTTC 1 cut(s) 825
MseI TTAA 4 cut(s) 572, 837, 863, 892
MspA1I CMGCKG 2 cut(s) 210, 308
MspR9I CCNGG 2 cut(s) 79, 355
MvaI CCWGG 2 cut(s) 79, 355
MwoI GCNNNNNNNGC 4 cut(s) 464, 560, 575, 584
NdeII GATC 2 cut(s) 318, 604
NlaIII CATG 2 cut(s) 673, 820
NlaIV GGNNCC 1 cut(s) 730
NmuCI GTSAC 2 cut(s) 12, 374
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 360
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 6 cut(s) 304, 307, 565, 568, 589, 742
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 77, 353
PspGI CCWGG 2 cut(s) 77, 353
PspN4I GGNNCC 1 cut(s) 730
PspPI GGNCC 1 cut(s) 729
PstNI CAGNNNCTG 2 cut(s) 308, 746
PsuI RGATCY 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 308
SaqAI TTAA 4 cut(s) 572, 837, 863, 892
SatI GCNGC 6 cut(s) 303, 306, 564, 567, 588, 741
Sau3AI GATC 2 cut(s) 318, 604
Sau96I GGNCC 1 cut(s) 729
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 2 cut(s) 79, 355
SduI GDGCHC 1 cut(s) 777
SfaNI GCATC 4 cut(s) 70, 382, 619, 752
SfcI CTRYAG 2 cut(s) 124, 280
SinI GGWCC 1 cut(s) 729
Sse9I AATT 5 cut(s) 238, 254, 526, 648, 685
SsiI CCGC 4 cut(s) 140, 208, 448, 800
SspI AATATT 1 cut(s) 273
SspMI CTAG 4 cut(s) 107, 413, 557, 581
StyD4I CCNGG 2 cut(s) 77, 353
StyI CCWWGG 2 cut(s) 556, 790
TaaI ACNGT 2 cut(s) 128, 194
TaiI ACGT 2 cut(s) 29, 381
TasI AATT 5 cut(s) 238, 254, 526, 648, 685
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 4 cut(s) 572, 837, 863, 892
Tru9I TTAA 4 cut(s) 572, 837, 863, 892
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 2 cut(s) 12, 374
TseI GCWGC 6 cut(s) 302, 305, 563, 566, 587, 740
Tsp45I GTSAC 2 cut(s) 12, 374
TspDTI ATGAA 3 cut(s) 143, 720, 867
TspGWI ACGGA 1 cut(s) 607
TspRI CASTG 1 cut(s) 469
Van91I CCANNNNNTGG 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 729
XapI RAATTY 2 cut(s) 238, 526
XbaI TCTAGA 1 cut(s) 580
XmaJI CCTAGG 1 cut(s) 556
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 4 cut(s) 107, 413, 557, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.