Rh1DG048000

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0019092
Physical Location & Seq
Reverse (-)
7890973 .. 7893172
2200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG048000.1

Sequence Viewer

Length: 516 bp
ATGATAAAAGGGAAGAGTAAAGAAGCTTTAATGGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTACCAACTGTGGGAGAACTACAGCCGTGTTGCTTTAGATGTTGGCAATGTTGCTCACGCTCTAGAAGCTACGCGTAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTGTTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGGAGATAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTTCTTGGAAAAGTTCTACAACAGGTGCTTGAGGCCAGTTGTTGCTGTTGTTCCGAAATGCCACTTGAGTGGTTTATTATAGGGGCAACAACTACTAGTACACGTTTTGGAAAGCTGTTAGGAATGGAAAGCTCAAGAATCTTTGTCTTCCCTTCTCGTTCTGGTTTGATTTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

171

Amino Acids

18.95

Weight (kDa)

5.51

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019092)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001512.1_g000002
rosa_rugosa Rorug01G0055700
rosa_samantha Rh1AG041900 Rh1BG039400 Rh1CG042900 Rh1DG023800 Rh1DG026200 Rh1DG026700 Rh1DG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 142
AclWI GGATC 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 3 cut(s) 79, 275, 276
AflIII ACRYGT 2 cut(s) 140, 437
AgsI TTSAA 2 cut(s) 58, 510
AhlI ACTAGT 1 cut(s) 431
AleI CACNNNNGTG 1 cut(s) 403
AluBI AGCT 6 cut(s) 26, 69, 137, 320, 451, 468
AluI AGCT 6 cut(s) 26, 69, 137, 320, 451, 468
Alw21I GWGCWC 1 cut(s) 327
AlwI GGATC 1 cut(s) 162
AlwNI CAGNNNCTG 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 312
AvaII GGWCC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 327
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 78
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 2 cut(s) 131, 432
BfmI CTRYAG 1 cut(s) 88
BlpI GCTNAGC 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 280
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 475
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 3 cut(s) 386, 422, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 275, 276
Bse1I ACTGG 1 cut(s) 372
Bse3DI GCAATG 2 cut(s) 121, 249
BseLI CCNNNNNNNGG 3 cut(s) 79, 275, 276
BseMI GCAATG 2 cut(s) 121, 249
BseMII CTCAG 2 cut(s) 174, 312
BseNI ACTGG 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 3 cut(s) 79, 275, 276
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 1 cut(s) 154
Bsp1720I GCTNAGC 1 cut(s) 321
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 2 cut(s) 175, 313
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 1 cut(s) 162
BsrDI GCAATG 2 cut(s) 121, 249
BsrI ACTGG 1 cut(s) 372
BssMI GATC 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 183, 321, 328
BstFNI CGCG 1 cut(s) 142
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 32, 134
BstSFI CTRYAG 1 cut(s) 88
BstUI CGCG 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 475
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 405
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 1 cut(s) 371
BtsIMutI CAGTG 2 cut(s) 47, 280
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 435
CviAII CATG 1 cut(s) 220
CviJI RGCY 9 cut(s) 26, 69, 93, 137, 224, 320, 371, 451, 468
CviKI_1 RGCY 9 cut(s) 26, 69, 93, 137, 224, 320, 371, 451, 468
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 3 cut(s) 183, 321, 328
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 312
FaeI CATG 1 cut(s) 223
FaiI YATR 3 cut(s) 203, 221, 416
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FaqI GGGAC 1 cut(s) 292
FatI CATG 1 cut(s) 219
FspBI CTAG 2 cut(s) 131, 432
HaeIII GGCC 1 cut(s) 371
Hin1II CATG 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 2 cut(s) 293, 474
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 2 cut(s) 298, 391
Hpy188III TCNNGA 3 cut(s) 131, 314, 471
Hpy8I GTNNAC 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 498
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 134
HpyF3I CTNAG 3 cut(s) 183, 321, 328
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 344, 385, 483
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 131, 432
MaeII ACGT 1 cut(s) 439
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 25, 475
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 3 cut(s) 174, 198, 235
MluI ACGCGT 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 132, 171
MnlI CCTC 2 cut(s) 202, 361
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 403
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 32, 134
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 403
PfeI GAWTC 2 cut(s) 293, 474
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 1 cut(s) 403
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 279
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 403
SmlI CTYRAG 3 cut(s) 365, 401, 469
SmoI CTYRAG 3 cut(s) 365, 401, 469
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 3 cut(s) 174, 198, 235
SspMI CTAG 2 cut(s) 131, 432
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 442
TasI AATT 3 cut(s) 174, 198, 235
TatI WGTACW 1 cut(s) 434
TfiI GAWTC 2 cut(s) 293, 474
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 54, 280
TspRI CASTG 2 cut(s) 54, 280
VpaK11BI GGWCC 1 cut(s) 279
XbaI TCTAGA 1 cut(s) 130
XspI CTAG 2 cut(s) 131, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.