Rh1AG041900

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0019092
Physical Location & Seq
Reverse (-)
7284704 .. 7289475
4772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG041900.1

Sequence Viewer

Length: 693 bp
ATGAAACTTTATAACTCATTAACGATATTGATGGACGATGATATTCTGTATGTCATATTCAGGCAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATGGGGATATTGAGAAGGCACTAGATGGCTTCACTCGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCTTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTTATGGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTACCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTCAGGCTCTAGAAGCTACGCGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTGTTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGGAGATAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGCGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTTCTTGGAAAAGTTCTACAACAGATTATAGGGGCAACAACTACTAGTACACGTTTTGGAAAGCTGTTAGGAATGGAAAGCTCAAGAATCTTTGTCTTCCCTTCTCGTTCTGGTTTGATTTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

230

Amino Acids

25.43

Weight (kDa)

5.08

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_2 PF07719 32 - 65 1.6e-06 Tetratricopeptide repeat
TPR_1 PF00515 33 - 65 8.5e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019092)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001512.1_g000002
rosa_rugosa Rorug01G0055700
rosa_samantha Rh1AG041900 Rh1BG039400 Rh1CG042900 Rh1DG023800 Rh1DG026200 Rh1DG026700 Rh1DG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
AccII CGCG 1 cut(s) 370
AciI CCGC 2 cut(s) 370, 530
AclWI GGATC 2 cut(s) 179, 390
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 1 cut(s) 613
AfiI CCNNNNNNNGG 4 cut(s) 194, 307, 503, 504
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 3 cut(s) 82, 286, 687
AhlI ACTAGT 1 cut(s) 608
AluBI AGCT 7 cut(s) 181, 254, 297, 365, 548, 628, 645
AluI AGCT 7 cut(s) 181, 254, 297, 365, 548, 628, 645
Alw21I GWGCWC 1 cut(s) 555
AlwI GGATC 2 cut(s) 179, 390
AlwNI CAGNNNCTG 1 cut(s) 524
Ama87I CYCGRG 2 cut(s) 168, 540
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 119, 122
ApoI RAATTY 1 cut(s) 82
AspA2I CCTAGG 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 447
AvaI CYCGRG 2 cut(s) 168, 540
AvaII GGWCC 1 cut(s) 507
AvrII CCTAGG 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 652
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 2 cut(s) 106, 109
BccI CCATC 5 cut(s) 25, 92, 128, 152, 476
BciVI GTATCC 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 4 cut(s) 113, 155, 359, 609
BfmI CTRYAG 1 cut(s) 316
BfuI GTATCC 1 cut(s) 102
BglI GCCNNNNNGGC 1 cut(s) 116
BisI GCNGC 2 cut(s) 120, 123
BlnI CCTAGG 1 cut(s) 112
BlpI GCTNAGC 1 cut(s) 549
BlsI GCNGC 2 cut(s) 121, 124
Bme18I GGWCC 1 cut(s) 507
BmeT110I CYCGRG 2 cut(s) 168, 540
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 1 cut(s) 508
BmsI GCATC 2 cut(s) 397, 517
BpiI GAAGAC 1 cut(s) 652
Bpu10I CCTNAGC 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 631
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 307, 503, 504
Bse3DI GCAATG 3 cut(s) 78, 349, 477
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 4 cut(s) 194, 307, 503, 504
BseMI GCAATG 3 cut(s) 78, 349, 477
BseMII CTCAG 3 cut(s) 365, 402, 540
BseXI GCAGC 2 cut(s) 106, 109
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 555
BsiHKCI CYCGRG 2 cut(s) 168, 540
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 4 cut(s) 194, 307, 503, 504
BsmFI GGGAC 1 cut(s) 520
BsnI GGCC 1 cut(s) 77
BsoBI CYCGRG 2 cut(s) 168, 540
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 2 cut(s) 184, 382
Bsp1720I GCTNAGC 1 cut(s) 549
BspACI CCGC 2 cut(s) 370, 530
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 3 cut(s) 364, 403, 541
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 508
BspPI GGATC 2 cut(s) 179, 390
BsrDI GCAATG 3 cut(s) 78, 349, 477
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 2 cut(s) 184, 382
BssT1I CCWWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 306
Bst6I CTCTTC 1 cut(s) 236
BstDEI CTNAG 4 cut(s) 351, 411, 549, 556
BstF5I GGATG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 370
BstKTI GATC 2 cut(s) 187, 385
BstMBI GATC 2 cut(s) 184, 382
BstMWI GCNNNNNNNGC 3 cut(s) 116, 260, 362
BstSFI CTRYAG 1 cut(s) 316
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 106, 109
BstV2I GAAGAC 1 cut(s) 652
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 275, 508
CaiI CAGNNNCTG 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 507
Csp6I GTAC 1 cut(s) 612
CviAII CATG 3 cut(s) 204, 323, 448
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 4 cut(s) 351, 411, 549, 556
DpnI GATC 2 cut(s) 186, 384
DpnII GATC 2 cut(s) 184, 382
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 2 cut(s) 168, 540
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 3 cut(s) 207, 326, 451
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FaqI GGGAC 1 cut(s) 520
FatI CATG 3 cut(s) 203, 322, 447
FauI CCCGC 1 cut(s) 523
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 120, 123
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 120, 123
FspBI CTAG 4 cut(s) 113, 155, 359, 609
GluI GCNGC 2 cut(s) 120, 123
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 3 cut(s) 207, 326, 451
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 2 cut(s) 521, 651
HphI GGTGA 1 cut(s) 447
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 1 cut(s) 526
Hpy188III TCNNGA 5 cut(s) 95, 188, 359, 542, 648
Hpy8I GTNNAC 1 cut(s) 614
HpyAV CCTTC 3 cut(s) 142, 367, 675
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 4 cut(s) 71, 125, 226, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 260, 362
HpyF3I CTNAG 4 cut(s) 351, 411, 549, 556
HpySE526I ACGT 1 cut(s) 616
Hsp92II CATG 3 cut(s) 207, 326, 451
Kzo9I GATC 2 cut(s) 184, 382
LpnPI CCDG 6 cut(s) 46, 88, 108, 201, 338, 660
Lsp1109I GCAGC 2 cut(s) 106, 109
LweI GCATC 2 cut(s) 397, 517
MaeI CTAG 4 cut(s) 113, 155, 359, 609
MaeII ACGT 1 cut(s) 616
MalI GATC 2 cut(s) 186, 384
MboI GATC 2 cut(s) 184, 382
MboII GAAGA 2 cut(s) 253, 652
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 4 cut(s) 82, 402, 426, 463
MmeI TCCRAC 2 cut(s) 360, 399
MnlI CCTC 2 cut(s) 193, 430
MseI TTAA 2 cut(s) 20, 128
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 3 cut(s) 116, 260, 362
NdeI CATATG 1 cut(s) 228
NdeII GATC 2 cut(s) 184, 382
NlaIII CATG 3 cut(s) 207, 326, 451
NlaIV GGNNCC 1 cut(s) 508
PfeI GAWTC 2 cut(s) 521, 651
PkrI GCNGC 2 cut(s) 121, 124
PsiI TTATAA 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 1 cut(s) 507
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
SaqAI TTAA 2 cut(s) 20, 128
SatI GCNGC 2 cut(s) 120, 123
Sau3AI GATC 2 cut(s) 184, 382
Sau96I GGNCC 1 cut(s) 507
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 2 cut(s) 397, 517
SfcI CTRYAG 1 cut(s) 316
SinI GGWCC 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 4 cut(s) 82, 402, 426, 463
SsiI CCGC 2 cut(s) 370, 530
SspI AATATT 1 cut(s) 214
SspMI CTAG 4 cut(s) 113, 155, 359, 609
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 1 cut(s) 619
TasI AATT 4 cut(s) 82, 402, 426, 463
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 2 cut(s) 521, 651
Tru1I TTAA 2 cut(s) 20, 128
Tru9I TTAA 2 cut(s) 20, 128
TscAI CASTG 2 cut(s) 282, 508
TseI GCWGC 2 cut(s) 119, 122
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 282, 508
VpaK11BI GGWCC 1 cut(s) 507
XapI RAATTY 1 cut(s) 82
XbaI TCTAGA 1 cut(s) 358
XmaJI CCTAGG 1 cut(s) 112
XspI CTAG 4 cut(s) 113, 155, 359, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.