Rh1DG026200

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0019092
Physical Location & Seq
Forward (+)
4050246 .. 4053522
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG026200.1

Sequence Viewer

Length: 738 bp
ATGACCTGCAAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATTGGTTCAGGGCATCAACAATCCCTCTCCAGGAGTGGCAGTCAGGATTCCTTTCTGCTAGGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGTATTACTTCATCTTTTGTTGACTTTTGATTTTTATAGTGGGGAATACGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAAATTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCGTTGGGTGACGTTACTGATGATGATGCCTGCTTTGAAAAAGCCCTAGAAGTCTCAAACGATAGGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGGAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTCGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATGTTGAGAAGGCACTAGATGGCTTTACACGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATCGCCTGTTTGCATATGATAAAAGGGAAGAGAAAAGAAGCTTTCATTGCATTTAGAGAAGCACTGAAGTTCAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

245

Amino Acids

27.45

Weight (kDa)

5.25

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019092)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001512.1_g000002
rosa_rugosa Rorug01G0055700
rosa_samantha Rh1AG041900 Rh1BG039400 Rh1CG042900 Rh1DG023800 Rh1DG026200 Rh1DG026700 Rh1DG048000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 360
AciI CCGC 3 cut(s) 140, 208, 448
AclWI GGATC 1 cut(s) 623
AcsI RAATTY 2 cut(s) 238, 526
AdeI CACNNNGTG 1 cut(s) 464
AfiI CCNNNNNNNGG 3 cut(s) 78, 360, 638
AgsI TTSAA 4 cut(s) 314, 404, 526, 730
AjnI CCWGG 2 cut(s) 77, 353
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 4 cut(s) 308, 625, 698, 733
AluI AGCT 4 cut(s) 308, 625, 698, 733
Alw26I GTCTC 2 cut(s) 424, 456
AlwI GGATC 1 cut(s) 623
AlwNI CAGNNNCTG 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 438
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 4 cut(s) 302, 305, 563, 566
ApoI RAATTY 2 cut(s) 238, 526
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AspA2I CCTAGG 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 206, 386
AvaI CYCGRG 1 cut(s) 438
AvrII CCTAGG 1 cut(s) 556
BbvI GCAGC 4 cut(s) 314, 317, 550, 553
BccI CCATC 3 cut(s) 35, 536, 596
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 2 cut(s) 79, 355
BciVI GTATCC 1 cut(s) 546
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 2 cut(s) 424, 456
BfaI CTAG 5 cut(s) 107, 413, 557, 599, 736
BfmI CTRYAG 2 cut(s) 124, 280
BfuAI ACCTGC 1 cut(s) 14
BfuI GTATCC 1 cut(s) 546
BglI GCCNNNNNGGC 1 cut(s) 560
BisI GCNGC 4 cut(s) 303, 306, 564, 567
BlnI CCTAGG 1 cut(s) 556
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 4 cut(s) 304, 307, 565, 568
Bme1390I CCNGG 2 cut(s) 79, 355
BmeT110I CYCGRG 1 cut(s) 438
BmrFI CCNGG 2 cut(s) 79, 355
BmsI GCATC 2 cut(s) 70, 382
BpmI CTGGAG 1 cut(s) 61
Bpu1102I GCTNAGC 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 353, 556
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 216, 246
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 360, 638
Bse3DI GCAATG 2 cut(s) 522, 702
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 2 cut(s) 79, 355
BseDI CCNNGG 2 cut(s) 353, 556
BseGI GGATG 1 cut(s) 589
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 3 cut(s) 78, 360, 638
BseMI GCAATG 2 cut(s) 522, 702
BseXI GCAGC 4 cut(s) 314, 317, 550, 553
BshFI GGCC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 438
BslI CCNNNNNNNGG 3 cut(s) 78, 360, 638
BsmAI GTCTC 2 cut(s) 424, 456
BsnI GGCC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 438
Bsp143I GATC 2 cut(s) 318, 628
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 3 cut(s) 140, 208, 448
BspANI GGCC 1 cut(s) 521
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 456
BsrDI GCAATG 2 cut(s) 522, 702
BssECI CCNNGG 2 cut(s) 353, 556
BssMI GATC 2 cut(s) 318, 628
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 2 cut(s) 79, 355
Bst4CI ACNGT 2 cut(s) 128, 194
Bst6I CTCTTC 1 cut(s) 680
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 397, 460
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 1 cut(s) 589
BstKTI GATC 2 cut(s) 321, 631
BstMAI GTCTC 2 cut(s) 424, 456
BstMBI GATC 2 cut(s) 318, 628
BstMWI GCNNNNNNNGC 3 cut(s) 464, 560, 704
BstNI CCWGG 2 cut(s) 79, 355
BstSCI CCNGG 2 cut(s) 77, 353
BstSFI CTRYAG 2 cut(s) 124, 280
BstV1I GCAGC 4 cut(s) 314, 317, 550, 553
BsuI GTATCC 1 cut(s) 546
BsuRI GGCC 1 cut(s) 521
BtsCI GGATG 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 2 cut(s) 469, 719
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 397, 460
CaiI CAGNNNCTG 1 cut(s) 308
CviAII CATG 1 cut(s) 648
DdeI CTNAG 1 cut(s) 444
DpnI GATC 2 cut(s) 320, 630
DpnII GATC 2 cut(s) 318, 628
DraIII CACNNNGTG 1 cut(s) 464
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 680
EarI CTCTTC 1 cut(s) 680
Eco130I CCWWGG 1 cut(s) 556
Eco31I GGTCTC 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 438
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 77, 353
EcoT14I CCWWGG 1 cut(s) 556
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 1 cut(s) 651
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 1 cut(s) 647
FauNDI CATATG 1 cut(s) 672
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 4 cut(s) 303, 306, 564, 567
FokI GGATG 1 cut(s) 596
Fsp4HI GCNGC 4 cut(s) 303, 306, 564, 567
FspBI CTAG 5 cut(s) 107, 413, 557, 599, 736
GluI GCNGC 4 cut(s) 303, 306, 564, 567
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 1 cut(s) 521
Hin1II CATG 1 cut(s) 651
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 2 cut(s) 95, 509
HphI GGTGA 2 cut(s) 206, 386
Hpy166II GTNNAC 2 cut(s) 165, 197
Hpy188I TCNGA 2 cut(s) 219, 337
Hpy188III TCNNGA 4 cut(s) 92, 322, 539, 632
Hpy8I GTNNAC 2 cut(s) 165, 197
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 2 cut(s) 128, 194
HpyCH4IV ACGT 2 cut(s) 26, 378
HpyCH4V TGCA 8 cut(s) 9, 30, 458, 467, 515, 569, 670, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 464, 560, 704
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 2 cut(s) 26, 378
Hsp92II CATG 1 cut(s) 651
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 2 cut(s) 318, 628
Lsp1109I GCAGC 4 cut(s) 314, 317, 550, 553
LweI GCATC 2 cut(s) 70, 382
MaeI CTAG 5 cut(s) 107, 413, 557, 599, 736
MaeII ACGT 2 cut(s) 26, 378
MaeIII GTNAC 3 cut(s) 12, 374, 379
MalI GATC 2 cut(s) 320, 630
MboI GATC 2 cut(s) 318, 628
MboII GAAGA 1 cut(s) 697
MluCI AATT 3 cut(s) 238, 254, 526
MlyI GAGTC 1 cut(s) 518
MnlI CCTC 4 cut(s) 83, 220, 238, 637
MseI TTAA 1 cut(s) 572
MspA1I CMGCKG 2 cut(s) 210, 308
MspR9I CCNGG 2 cut(s) 79, 355
MvaI CCWGG 2 cut(s) 79, 355
MwoI GCNNNNNNNGC 3 cut(s) 464, 560, 704
NdeI CATATG 1 cut(s) 672
NdeII GATC 2 cut(s) 318, 628
NlaIII CATG 1 cut(s) 651
NmuCI GTSAC 2 cut(s) 12, 374
PfeI GAWTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 360
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 4 cut(s) 304, 307, 565, 568
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 77, 353
PspGI CCWGG 2 cut(s) 77, 353
PstNI CAGNNNCTG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 572
SatI GCNGC 4 cut(s) 303, 306, 564, 567
Sau3AI GATC 2 cut(s) 318, 628
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 2 cut(s) 79, 355
SfaNI GCATC 2 cut(s) 70, 382
SfcI CTRYAG 2 cut(s) 124, 280
Sse9I AATT 3 cut(s) 238, 254, 526
SsiI CCGC 3 cut(s) 140, 208, 448
SspI AATATT 1 cut(s) 273
SspMI CTAG 5 cut(s) 107, 413, 557, 599, 736
StyD4I CCNGG 2 cut(s) 77, 353
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 128, 194
TaiI ACGT 2 cut(s) 29, 381
TasI AATT 3 cut(s) 238, 254, 526
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TscAI CASTG 2 cut(s) 469, 726
TseFI GTSAC 2 cut(s) 12, 374
TseI GCWGC 4 cut(s) 302, 305, 563, 566
Tsp45I GTSAC 2 cut(s) 12, 374
TspDTI ATGAA 2 cut(s) 143, 691
TspRI CASTG 2 cut(s) 469, 726
Van91I CCANNNNNTGG 1 cut(s) 360
XapI RAATTY 2 cut(s) 238, 526
XmaJI CCTAGG 1 cut(s) 556
XspI CTAG 5 cut(s) 107, 413, 557, 599, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.