Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016221

Physical Location & Seq

Genomic Coordinates Reverse (-)

20196347 .. 20197228

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0114200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTCACGGTCATGAAAACCAAATTGCTTACTACCTTTCCAGAGTCTTTGGTGTCCCATAGGTGGACAAAGGAGGCATCTCCGAAGAAGCCCCATTTCATAAGCAGAAGCGATACCGTTTCTGCGGTTGATATCCAGCTTGCAAGATATGCACAGATGATGTCTGATTGTTCACACATATGTCACTCGACCTCCTTTTCTGATGATGCTTATGACAAAACTTGTGAAGCCTTTAGTAGGTTGATTGTTAGATCAAAAAATTGGCAAGGTCCTGATCACGTCGCAAGTGTTACTATTGATGGTCTCCATCCAAATGTCATTCGCGATCTGGAACCTTGTCGTACAAAAGAGGCTCAAACGAGGGCAGCTACCATTCCTACTGACCGGGAGCAGCCATCTGCTAGGATCTGTGGATTTTGTACTAGACCCGGTCACAACGTCAGGACATGCCCTCTCAGAATTGGGGCTGAGGTCAATACTGATGCTGATAACAGATCGAATCCAGCTGCTGGTTCGAACACACAAGGTTTACACGATAGGGGAGGTCAGAGTTCGGTATTTCCTGACCGAGTCTCCACTGAATCATTTAGTGTACGCCACACAATATCTGCTTTCCCAAGTAATCGTGAAGGATTCCCATCGAACTTTCAAAATGATGAGGAGTTGGCCTACCCCACTCAGTCAAGCTTCCAACATATGATCTATTATGTTGAAGAGGCAAGGGCATATGATTTCTTTTCAAGGCATGAAAACATATTGTCTTCTGTATTCGGTGGGAATGGAAACCATAATCCAGCCGATCCATCTATCTCTTCTAATCAACCAGGTCCGGCAATAAATAATGGGGGTCCAAGCATATTTGGTCATCAATGGTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

293

Amino Acids

32.54

Weight (kDa)

6.35

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18190
fragaria_vesca	FvH4_7g06380
malus_domestica	MD06G1222400.v1.1 MD14G1231500.v1.1
prunus_persica	Prupe.5G227000_v2.0.a1
pyrus_communis	pycom14g19270
rosa_chinensis	RchiOBHm_Chr1g0334481
rosa_laevigata	RLG00000029450
rosa_multiflora	Rmu_ssc0000404.1_g000012
rosa_roxburghii	Rroxscaffold_4G00316810
rosa_rugosa	Rorug01G0114200
rosa_samantha	Rh1AG139400 Rh1BG105800 Rh1DG143300
rosa_wichuraiana	Rw1G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccII	CGCG	1 cut(s)	324
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	413, 794
AfaI	GTAC	3 cut(s)	343, 421, 594
AfiI	CCNNNNNNNGG	3 cut(s)	63, 237, 509
AgsI	TTSAA	3 cut(s)	650, 713, 741
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	823
AluBI	AGCT	4 cut(s)	139, 368, 506, 687
AluI	AGCT	4 cut(s)	139, 368, 506, 687
Alw26I	GTCTC	2 cut(s)	308, 577
AlwI	GGATC	2 cut(s)	413, 794
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	1 cut(s)	666
ApeKI	GCWGC	3 cut(s)	365, 391, 506
AspS9I	GGNCC	3 cut(s)	269, 827, 848
AsuC2I	CCSGG	2 cut(s)	386, 429
AsuII	TTCGAA	1 cut(s)	515
AvaII	GGWCC	3 cut(s)	269, 827, 848
BbsI	GAAGAC	1 cut(s)	753
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	3 cut(s)	377, 403, 493
BccI	CCATC	5 cut(s)	293, 315, 403, 646, 811
BciT130I	CCWGG	1 cut(s)	825
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	2 cut(s)	386, 429
BcoDI	GTCTC	2 cut(s)	308, 577
BfaI	CTAG	2 cut(s)	402, 423
BisI	GCNGC	3 cut(s)	366, 392, 507
BlsI	GCNGC	3 cut(s)	367, 393, 508
Bme1390I	CCNGG	3 cut(s)	386, 429, 825
Bme18I	GGWCC	3 cut(s)	269, 827, 848
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	3 cut(s)	269, 827, 848
BmiI	GGNNCC	2 cut(s)	333, 849
BmrFI	CCNGG	3 cut(s)	386, 429, 825
BmsI	GCATC	3 cut(s)	86, 196, 472
BpiI	GAAGAC	1 cut(s)	753
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	515
BpuMI	CCSGG	2 cut(s)	386, 429
BsaBI	GATNNNNATC	1 cut(s)	637
BsaI	GGTCTC	1 cut(s)	308
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 557, 587
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 237, 509
Bse8I	GATNNNNATC	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	825
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	637
BseLI	CCNNNNNNNGG	3 cut(s)	63, 237, 509
BseMII	CTCAG	3 cut(s)	459, 469, 692
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	3 cut(s)	377, 403, 493
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	668
BsiSI	CCGG	3 cut(s)	385, 429, 830
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	63, 237, 509
BsmAI	GTCTC	2 cut(s)	308, 577
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	668
Bso31I	GGTCTC	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	515
Bsp143I	GATC	7 cut(s)	251, 274, 325, 405, 494, 699, 799
Bsp68I	TCGCGA	1 cut(s)	324
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	3 cut(s)	460, 468, 691
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	333, 849
BspPI	GGATC	2 cut(s)	413, 794
BspT104I	TTCGAA	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	308
BssMI	GATC	7 cut(s)	251, 274, 325, 405, 494, 699, 799
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	2 cut(s)	10, 118
Bst6I	CTCTTC	2 cut(s)	708, 817
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	455, 468, 678
BstENI	CCTNNNNNAGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	7 cut(s)	254, 277, 328, 408, 497, 702, 802
BstMAI	GTCTC	2 cut(s)	308, 577
BstMBI	GATC	7 cut(s)	251, 274, 325, 405, 494, 699, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	3 cut(s)	384, 427, 823
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	377, 403, 493
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	668
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	576
BtuMI	TCGCGA	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	1 cut(s)	12
Cfr13I	GGNCC	3 cut(s)	269, 827, 848
CsiI	ACCWGGT	1 cut(s)	823
Csp6I	GTAC	3 cut(s)	342, 420, 593
CviAII	CATG	3 cut(s)	13, 447, 746
CviQI	GTAC	3 cut(s)	342, 420, 593
DdeI	CTNAG	3 cut(s)	455, 468, 678
DpnI	GATC	7 cut(s)	253, 276, 327, 407, 496, 701, 801
DpnII	GATC	7 cut(s)	251, 274, 325, 405, 494, 699, 799
Eam1104I	CTCTTC	2 cut(s)	708, 817
EarI	CTCTTC	2 cut(s)	708, 817
Eco31I	GGTCTC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	3 cut(s)	269, 827, 848
EcoNI	CCTNNNNNAGG	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	823
EcoRV	GATATC	1 cut(s)	133
FaeI	CATG	3 cut(s)	16, 450, 749
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	3 cut(s)	12, 446, 745
FauNDI	CATATG	3 cut(s)	179, 696, 727
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	366, 392, 507
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	3 cut(s)	366, 392, 507
FspBI	CTAG	2 cut(s)	402, 423
GluI	GCNGC	3 cut(s)	366, 392, 507
HaeIII	GGCC	1 cut(s)	668
HapII	CCGG	3 cut(s)	385, 429, 830
Hin1II	CATG	3 cut(s)	16, 450, 749
HindIII	AAGCTT	1 cut(s)	685
HinfI	GANTC	5 cut(s)	44, 499, 570, 581, 633
HpaII	CCGG	3 cut(s)	385, 429, 830
Hpy166II	GTNNAC	5 cut(s)	6, 66, 173, 530, 593
Hpy188I	TCNGA	5 cut(s)	84, 166, 202, 458, 549
Hpy188III	TCNNGA	8 cut(s)	13, 41, 272, 323, 329, 442, 563, 626
Hpy8I	GTNNAC	5 cut(s)	6, 66, 173, 530, 593
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	2 cut(s)	10, 118
HpyCH4IV	ACGT	2 cut(s)	279, 438
HpyCH4V	TGCA	2 cut(s)	143, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	3 cut(s)	455, 468, 678
HpySE526I	ACGT	2 cut(s)	279, 438
Hsp92II	CATG	3 cut(s)	16, 450, 749
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	7 cut(s)	251, 274, 325, 405, 494, 699, 799
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	3 cut(s)	377, 403, 493
LweI	GCATC	3 cut(s)	86, 196, 472
MabI	ACCWGGT	1 cut(s)	823
MaeI	CTAG	2 cut(s)	402, 423
MaeII	ACGT	2 cut(s)	279, 438
MaeIII	GTNAC	3 cut(s)	182, 289, 431
MalI	GATC	7 cut(s)	253, 276, 327, 407, 496, 701, 801
MboI	GATC	7 cut(s)	251, 274, 325, 405, 494, 699, 799
MboII	GAAGA	4 cut(s)	97, 725, 753, 804
MflI	RGATCY	1 cut(s)	405
MluCI	AATT	3 cut(s)	23, 259, 459
MlyI	GAGTC	2 cut(s)	53, 579
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	9 cut(s)	67, 202, 343, 354, 462, 463, 536, 652, 709
MslI	CAYNNNNRTG	3 cut(s)	11, 178, 312
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	3 cut(s)	385, 429, 830
MspR9I	CCNGG	3 cut(s)	386, 429, 825
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	2 cut(s)	386, 429
NdeI	CATATG	3 cut(s)	179, 696, 727
NdeII	GATC	7 cut(s)	251, 274, 325, 405, 494, 699, 799
NlaIII	CATG	3 cut(s)	16, 450, 749
NlaIV	GGNNCC	2 cut(s)	333, 849
NmuCI	GTSAC	2 cut(s)	182, 431
NruI	TCGCGA	1 cut(s)	324
NspI	RCATGY	1 cut(s)	450
NspV	TTCGAA	1 cut(s)	515
PagI	TCATGA	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	499, 581, 633
PflFI	GACNNNGTC	2 cut(s)	429, 569
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	367, 393, 508
PleI	GAGTC	2 cut(s)	52, 578
PpsI	GAGTC	2 cut(s)	52, 578
PpuMI	RGGWCCY	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	2 cut(s)	333, 849
PspPI	GGNCC	3 cut(s)	269, 827, 848
PspPPI	RGGWCCY	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	405
PsyI	GACNNNGTC	2 cut(s)	429, 569
PvuII	CAGCTG	1 cut(s)	506
RruI	TCGCGA	1 cut(s)	324
RsaI	GTAC	3 cut(s)	343, 421, 594
RsaNI	GTAC	3 cut(s)	342, 420, 593
RseI	CAYNNNNRTG	3 cut(s)	11, 178, 312
SatI	GCNGC	3 cut(s)	366, 392, 507
Sau3AI	GATC	7 cut(s)	251, 274, 325, 405, 494, 699, 799
Sau96I	GGNCC	3 cut(s)	269, 827, 848
SchI	GAGTC	2 cut(s)	53, 579
ScrFI	CCNGG	3 cut(s)	386, 429, 825
SexAI	ACCWGGT	1 cut(s)	823
SfaNI	GCATC	3 cut(s)	86, 196, 472
SfuI	TTCGAA	1 cut(s)	515
SinI	GGWCC	3 cut(s)	269, 827, 848
SmiMI	CAYNNNNRTG	3 cut(s)	11, 178, 312
Sse9I	AATT	3 cut(s)	23, 259, 459
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	2 cut(s)	402, 423
StyD4I	CCNGG	3 cut(s)	384, 427, 823
TaaI	ACNGT	2 cut(s)	10, 118
TaiI	ACGT	2 cut(s)	282, 441
TaqI	TCGA	4 cut(s)	188, 497, 515, 641
TaqII	GACCGA	1 cut(s)	582
TasI	AATT	3 cut(s)	23, 259, 459
TatI	WGTACW	1 cut(s)	419
TfiI	GAWTC	3 cut(s)	499, 581, 633
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	2 cut(s)	182, 431
TseI	GCWGC	3 cut(s)	365, 391, 506
Tsp45I	GTSAC	2 cut(s)	182, 431
TspDTI	ATGAA	3 cut(s)	29, 88, 762
TspRI	CASTG	1 cut(s)	583
Tth111I	GACNNNGTC	2 cut(s)	429, 569
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	3 cut(s)	269, 827, 848
XagI	CCTNNNNNAGG	1 cut(s)	235
XceI	RCATGY	1 cut(s)	450
XspI	CTAG	2 cut(s)	402, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.