Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0016221

Physical Location & Seq

Genomic Coordinates Forward (+)

30245521 .. 30247125

Gene Structure 1605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG143300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGGCTTCTTCAGCAGTAGCCGCCCCCCGGTCTTCCTCCAAGACCGAGTCCTACGTCGACAACAAGCGCAAGGAGGACGTCCGCCAGGCCAACATCCTCGCCGCCCGCACCGTCGCCGACGCCGTCCGCACCAGCCTCGGCCCCAAAGGCATGGACAAGATGATCTCCACCGCCAACGGTGACGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGGAGGTCCTCCAGCCCGCCGCCAAGATGCTCGTCGAGCTCTCCAAGTCCCAGGACGCCGCCGCCGGGGACGGCACCACCACCGTCGTCGTCATAGCCGGCGCTCTGCTCAAGCAGTGCCTCGTCCTCCTCTCCCACGGCATCCACCCCACGGTGATCTCCGACTCGCTCCACAAGGTCTCGATCAAGGCCGTCGACGTCCTGACCGCCATGGCCCGCCCCGTGGAGCTCTCCGACCGGGAATCGCTTGTTAAATCGGCGAGCACTGCGCTCAACAGCAAGGTCGTGAGTCAGTACTCGACGCTTCTGGCGCCGTTGGCGGTGGATGCAGTGCTATCAGTGGTGGACCCTGCGAAGCCGGAAATTGTGGACCTGAGGGACATCAAGATCGTGAAGAAGCTCGGCGGAACCGTCGACGATACCGAAACCATTAAGGGGCTGGTTTTCGATAAGAAGACGAGCCACGCTGCTGGTGGTCCCACAAGGATGGAGAAGGCGAAGATTGCTGTGATTCAGTTCCAGATTTCGCCTCCGAAAACTGATATCGAGCAGAGCATAGTGGTTTCGGACTATACCCAGATGGATAGGATTTTGAAGGAGGAGAGGAATTACATTCTCAGTATGATTAAGAAGATCAAGTCGACGGGTTGTAACGTTCTGCTGATCCAGAAGAGTATTTTGAGGGATGCAGTGACTGATCTGTCATTGCATTACTTGGCCAAAGCCAAGATTTTGGTGGTTAAGGATGTGGAGAGGGATGAGATTGAGTTTATCACCAAGACTCTGAATTGCCTGCCCATTGCAAATATCGAGCATTTCCGGGAGGAGAAGCTGGGGTATGCTGACTTGGTGGAGGAGTCTTCCCTTGGTGATAGCAAGATTGTGAAGATTACTGGGATTCAGAACATGGGTAGGACTACGTCTGTGCTGGTTCGTGGCTCGAACCAGTTGGTGCTTGATGAGGCTGAGAGGAGCTTGCACGATGCTTTGTGTGTGGTTAGGTGTTTGGTGAGCAAGAGGTTTTTGATTGCTGGTGGTGGTGCCCCGGAGATTGAGCTCTCCAGGCAGTTGGGTGCTTGGGCTAAGGTGTTGCAGGGGATGGAGAGTCATTGTGTCAAGTATTTTGCACAAGCACTTGAGGTTATTCCCTATACATTGGCTGAAAATGCTGGGTTGAACCCGATGACCATTGTCACTGAGCTGAGGAACCGCCACAATGAGGGTGAGATCAACACTGGCATTAATGTGAGGAAGGGGCAGATTACCAACATCTGGGACGAGAATGTGGTGCAGCCACTGCTGGTGAGCACAAGTGCCATCACATTGGCCACAGAGTGTGTGCGGATGATTTTGAAGATCGATGACATAGTAACAGTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

534

Amino Acids

57.97

Weight (kDa)

7.59

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	38 - 532	4.2e-161	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18190
fragaria_vesca	FvH4_7g06380
malus_domestica	MD06G1222400.v1.1 MD14G1231500.v1.1
prunus_persica	Prupe.5G227000_v2.0.a1
pyrus_communis	pycom14g19270
rosa_chinensis	RchiOBHm_Chr1g0334481
rosa_laevigata	RLG00000029450
rosa_multiflora	Rmu_ssc0000404.1_g000012
rosa_roxburghii	Rroxscaffold_4G00316810
rosa_rugosa	Rorug01G0114200
rosa_samantha	Rh1AG139400 Rh1BG105800 Rh1DG143300
rosa_wichuraiana	Rw1G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	922
AatII	GACGTC	3 cut(s)	81, 186, 423
AccB1I	GGYRCC	4 cut(s)	203, 296, 532, 1262
AccB7I	CCANNNNNTGG	1 cut(s)	1494
AccI	GTMKAC	4 cut(s)	57, 417, 636, 863
AclI	AACGTT	1 cut(s)	876
AclWI	GGATC	1 cut(s)	880
AcoI	YGGCCR	2 cut(s)	939, 1548
AcyI	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
AdeI	CACNNNGTG	1 cut(s)	1557
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	7 cut(s)	27, 288, 373, 445, 657, 1441, 1494
AgsI	TTSAA	3 cut(s)	817, 1399, 1576
AjnI	CCWGG	3 cut(s)	84, 273, 1283
AluBI	AGCT	7 cut(s)	262, 451, 622, 1054, 1197, 1279, 1423
AluI	AGCT	7 cut(s)	262, 451, 622, 1054, 1197, 1279, 1423
Alw21I	GWGCWC	5 cut(s)	264, 453, 488, 1281, 1532
Alw26I	GTCTC	1 cut(s)	406
AlwI	GGATC	1 cut(s)	880
AlwNI	CAGNNNCTG	2 cut(s)	917, 1519
AoxI	GGCC	6 cut(s)	87, 139, 411, 435, 939, 1548
ApeKI	GCWGC	2 cut(s)	689, 1513
AseI	ATTAAT	1 cut(s)	1464
AspLEI	GCGC	5 cut(s)	69, 206, 326, 493, 535
AspS9I	GGNCC	6 cut(s)	140, 229, 436, 568, 592, 698
AsuC2I	CCSGG	5 cut(s)	28, 289, 461, 1043, 1268
AsuHPI	GGTGA	8 cut(s)	184, 191, 388, 988, 1103, 1243, 1457, 1537
AvaII	GGWCC	4 cut(s)	229, 568, 592, 698
AxyI	CCTNAGG	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	1267
BalI	TGGCCA	2 cut(s)	941, 1550
BanI	GGYRCC	4 cut(s)	203, 296, 532, 1262
BanII	GRGCYC	3 cut(s)	264, 453, 1281
BbsI	GAAGAC	3 cut(s)	24, 683, 1074
Bbv12I	GWGCWC	5 cut(s)	264, 453, 488, 1281, 1532
BbvCI	CCTCAGC	1 cut(s)	1424
BbvI	GCAGC	2 cut(s)	676, 1525
BccI	CCATC	6 cut(s)	217, 218, 703, 796, 1315, 1547
BceAI	ACGGC	6 cut(s)	107, 217, 310, 376, 398, 520
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	3 cut(s)	86, 275, 1285
BcnI	CCSGG	5 cut(s)	28, 289, 461, 1043, 1268
BcoDI	GTCTC	1 cut(s)	406
BfoI	RGCGCY	3 cut(s)	207, 327, 536
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	7 cut(s)	21, 102, 243, 282, 285, 690, 1514
BlsI	GCNGC	7 cut(s)	22, 103, 244, 283, 286, 691, 1515
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	8 cut(s)	28, 86, 275, 289, 461, 1043, 1268, 1285
Bme18I	GGWCC	4 cut(s)	229, 568, 592, 698
BmgT120I	GGNCC	6 cut(s)	140, 229, 436, 568, 592, 698
BmiI	GGNNCC	9 cut(s)	142, 205, 298, 534, 570, 631, 700, 1264, 1430
BmrFI	CCNGG	8 cut(s)	28, 86, 275, 289, 461, 1043, 1268, 1285
BmrI	ACTGGG	1 cut(s)	1125
BmsI	GCATC	5 cut(s)	240, 372, 538, 898, 1195
BmuI	ACTGGG	1 cut(s)	1125
BoxI	GACNNNNGTC	1 cut(s)	1412
BpiI	GAAGAC	3 cut(s)	24, 683, 1074
BpmI	CTGGAG	2 cut(s)	218, 1267
Bpu10I	CCTNAGC	2 cut(s)	1305, 1424
BpuEI	CTTGAG	2 cut(s)	317, 1379
BpuMI	CCSGG	5 cut(s)	28, 289, 461, 1043, 1268
Bsa29I	ATCGAT	1 cut(s)	1581
BsaHI	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
BsaI	GGTCTC	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	7 cut(s)	27, 288, 373, 445, 657, 1441, 1494
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	3 cut(s)	1120, 1168, 1462
Bse21I	CCTNAGG	1 cut(s)	596
Bse3DI	GCAATG	2 cut(s)	926, 1020
BseBI	CCWGG	3 cut(s)	86, 275, 1285
BseCI	ATCGAT	1 cut(s)	1581
BseLI	CCNNNNNNNGG	7 cut(s)	27, 288, 373, 445, 657, 1441, 1494
BseMI	GCAATG	2 cut(s)	926, 1020
BseMII	CTCAG	5 cut(s)	587, 853, 1179, 1410, 1415
BseNI	ACTGG	3 cut(s)	1120, 1168, 1462
BseRI	GAGGAG	5 cut(s)	341, 836, 1061, 1091, 1207
BseSI	GKGCMC	1 cut(s)	1267
BseXI	GCAGC	2 cut(s)	676, 1525
BseYI	CCCAGC	2 cut(s)	1054, 1391
BsgI	GTGCAG	1 cut(s)	1532
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	6 cut(s)	89, 141, 413, 437, 941, 1550
BshNI	GGYRCC	4 cut(s)	203, 296, 532, 1262
BshVI	ATCGAT	1 cut(s)	1581
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	5 cut(s)	264, 453, 488, 1281, 1532
BsiSI	CCGG	7 cut(s)	28, 288, 321, 460, 581, 1042, 1268
BslFI	GGGAC	5 cut(s)	256, 305, 614, 684, 1511
BslI	CCNNNNNNNGG	7 cut(s)	27, 288, 373, 445, 657, 1441, 1494
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	5 cut(s)	256, 305, 614, 684, 1511
BsnI	GGCC	6 cut(s)	89, 141, 413, 437, 941, 1550
Bso31I	GGTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	6 cut(s)	264, 453, 488, 1267, 1281, 1532
Bsp143I	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
Bsp19I	CCATGG	1 cut(s)	432
BspANI	GGCC	6 cut(s)	89, 141, 413, 437, 941, 1550
BspCNI	CTCAG	5 cut(s)	588, 852, 1180, 1411, 1416
BspDI	ATCGAT	1 cut(s)	1581
BspLI	GGNNCC	9 cut(s)	142, 205, 298, 534, 570, 631, 700, 1264, 1430
BspPI	GGATC	1 cut(s)	880
BspT107I	GGYRCC	4 cut(s)	203, 296, 532, 1262
BspTNI	GGTCTC	1 cut(s)	406
BsrDI	GCAATG	2 cut(s)	926, 1020
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	3 cut(s)	1120, 1168, 1462
BssAI	RCCGGY	1 cut(s)	320
BssMI	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
BssNI	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
BssT1I	CCWWGG	2 cut(s)	432, 1087
Bst2UI	CCWGG	3 cut(s)	86, 275, 1285
Bst4CI	ACNGT	6 cut(s)	112, 179, 307, 376, 634, 1597
Bst6I	CTCTTC	1 cut(s)	887
BstACI	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
BstAPI	GCANNNNNTGC	1 cut(s)	1519
BstC8I	GCNNGC	7 cut(s)	106, 240, 322, 439, 484, 1016, 1199
BstDEI	CTNAG	6 cut(s)	596, 839, 1188, 1305, 1419, 1424
BstDSI	CCRYGG	4 cut(s)	358, 372, 432, 444
BstH2I	RGCGCY	3 cut(s)	207, 327, 536
BstHHI	GCGC	5 cut(s)	69, 206, 326, 493, 535
BstKTI	GATC	9 cut(s)	165, 381, 408, 612, 858, 888, 922, 1452, 1581
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
BstMCI	CGRYCG	1 cut(s)	460
BstNI	CCWGG	3 cut(s)	86, 275, 1285
BstPAI	GACNNNNGTC	1 cut(s)	1412
BstSCI	CCNGG	8 cut(s)	26, 84, 273, 287, 459, 1041, 1266, 1283
BstSLI	GKGCMC	1 cut(s)	1267
BstV1I	GCAGC	2 cut(s)	676, 1525
BstV2I	GAAGAC	3 cut(s)	24, 683, 1074
BstXI	CCANNNNNNTGG	6 cut(s)	151, 692, 709, 955, 1291, 1546
Bsu15I	ATCGAT	1 cut(s)	1581
Bsu36I	CCTNAGG	1 cut(s)	596
BsuRI	GGCC	6 cut(s)	89, 141, 413, 437, 941, 1550
BsuTUI	ATCGAT	1 cut(s)	1581
BtgI	CCRYGG	4 cut(s)	358, 372, 432, 444
BtsI	GCAGTG	5 cut(s)	344, 486, 558, 918, 1517
BtsIMutI	CAGTG	8 cut(s)	344, 486, 558, 567, 918, 1416, 1455, 1517
Cac8I	GCNNGC	7 cut(s)	106, 240, 322, 439, 484, 1016, 1199
CaiI	CAGNNNCTG	2 cut(s)	917, 1519
CfoI	GCGC	5 cut(s)	69, 206, 326, 493, 535
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	6 cut(s)	140, 229, 436, 568, 592, 698
ClaI	ATCGAT	1 cut(s)	1581
CseI	GACGC	3 cut(s)	128, 287, 532
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	3 cut(s)	151, 433, 1129
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	6 cut(s)	596, 839, 1188, 1305, 1419, 1424
DinI	GGCGCC	2 cut(s)	205, 534
DpnI	GATC	9 cut(s)	164, 380, 407, 611, 857, 887, 921, 1451, 1580
DpnII	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
DraIII	CACNNNGTG	1 cut(s)	1557
DrdI	GACNNNNNNGTC	1 cut(s)	922
DseDI	GACNNNNNNGTC	1 cut(s)	922
EaeI	YGGCCR	2 cut(s)	939, 1548
Eam1104I	CTCTTC	1 cut(s)	887
EarI	CTCTTC	1 cut(s)	887
EciI	GGCGGA	2 cut(s)	71, 642
Ecl136II	GAGCTC	3 cut(s)	262, 451, 1279
Eco130I	CCWWGG	2 cut(s)	432, 1087
Eco24I	GRGCYC	3 cut(s)	264, 453, 1281
Eco31I	GGTCTC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	4 cut(s)	229, 568, 592, 698
Eco53kI	GAGCTC	3 cut(s)	262, 451, 1279
Eco81I	CCTNAGG	1 cut(s)	596
EcoICRI	GAGCTC	3 cut(s)	262, 451, 1279
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	84, 273, 1283
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	2 cut(s)	432, 1087
EcoT38I	GRGCYC	3 cut(s)	264, 453, 1281
EgeI	GGCGCC	2 cut(s)	205, 534
EheI	GGCGCC	2 cut(s)	205, 534
ErhI	CCWWGG	2 cut(s)	432, 1087
FaeI	CATG	3 cut(s)	154, 436, 1132
FaqI	GGGAC	5 cut(s)	256, 305, 614, 684, 1511
FatI	CATG	3 cut(s)	150, 432, 1128
FauI	CCCGC	3 cut(s)	113, 247, 446
FblI	GTMKAC	4 cut(s)	57, 417, 636, 863
Fnu4HI	GCNGC	7 cut(s)	21, 102, 243, 282, 285, 690, 1514
FriOI	GRGCYC	3 cut(s)	264, 453, 1281
Fsp4HI	GCNGC	7 cut(s)	21, 102, 243, 282, 285, 690, 1514
GlaI	GCGC	5 cut(s)	68, 205, 325, 492, 534
GluI	GCNGC	7 cut(s)	21, 102, 243, 282, 285, 690, 1514
GsaI	CCCAGC	2 cut(s)	1058, 1395
GsuI	CTGGAG	2 cut(s)	218, 1267
HaeII	RGCGCY	3 cut(s)	207, 327, 536
HaeIII	GGCC	6 cut(s)	89, 141, 413, 437, 941, 1550
HapII	CCGG	7 cut(s)	28, 288, 321, 460, 581, 1042, 1268
HgaI	GACGC	3 cut(s)	128, 287, 532
HhaI	GCGC	5 cut(s)	69, 206, 326, 493, 535
Hin1I	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
Hin1II	CATG	3 cut(s)	154, 436, 1132
Hin6I	GCGC	5 cut(s)	67, 204, 324, 491, 533
HinP1I	GCGC	5 cut(s)	67, 204, 324, 491, 533
HincII	GTYRAC	4 cut(s)	58, 418, 637, 864
HindII	GTYRAC	4 cut(s)	58, 418, 637, 864
HinfI	GANTC	9 cut(s)	47, 386, 464, 511, 733, 1003, 1079, 1120, 1327
HpaII	CCGG	7 cut(s)	28, 288, 321, 460, 581, 1042, 1268
HphI	GGTGA	8 cut(s)	184, 191, 388, 988, 1103, 1243, 1457, 1537
Hpy166II	GTNNAC	6 cut(s)	58, 418, 568, 592, 637, 864
Hpy188I	TCNGA	6 cut(s)	385, 457, 756, 790, 1008, 1125
Hpy188III	TCNNGA	7 cut(s)	403, 424, 508, 607, 613, 742, 889
Hpy8I	GTNNAC	6 cut(s)	58, 418, 568, 592, 637, 864
HpyAV	CCTTC	3 cut(s)	709, 811, 1468
HpyCH4III	ACNGT	6 cut(s)	112, 179, 307, 376, 634, 1597
HpyCH4IV	ACGT	6 cut(s)	54, 78, 183, 420, 876, 1142
HpyCH4V	TGCA	8 cut(s)	551, 911, 931, 1025, 1201, 1315, 1349, 1513
HpyF3I	CTNAG	6 cut(s)	596, 839, 1188, 1305, 1419, 1424
HpySE526I	ACGT	6 cut(s)	54, 78, 183, 420, 876, 1142
Hsp92I	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
Hsp92II	CATG	3 cut(s)	154, 436, 1132
HspAI	GCGC	5 cut(s)	67, 204, 324, 491, 533
KasI	GGCGCC	2 cut(s)	203, 532
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
LmnI	GCTCC	3 cut(s)	396, 448, 1194
Lsp1109I	GCAGC	2 cut(s)	676, 1525
LweI	GCATC	5 cut(s)	240, 372, 538, 898, 1195
MaeII	ACGT	6 cut(s)	54, 78, 183, 420, 876, 1142
MaeIII	GTNAC	5 cut(s)	179, 872, 913, 1414, 1591
MalI	GATC	9 cut(s)	164, 380, 407, 611, 857, 887, 921, 1451, 1580
MboI	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
MboII	GAAGA	9 cut(s)	24, 628, 688, 733, 865, 904, 1074, 1120, 1588
MhlI	GDGCHC	6 cut(s)	264, 453, 488, 1267, 1281, 1532
MlsI	TGGCCA	2 cut(s)	941, 1550
MluCI	AATT	3 cut(s)	585, 829, 1009
MluNI	TGGCCA	2 cut(s)	941, 1550
Mly113I	GGCGCC	2 cut(s)	204, 533
MlyI	GAGTC	6 cut(s)	56, 380, 520, 997, 1088, 1336
MmeI	TCCRAC	2 cut(s)	408, 480
Mox20I	TGGCCA	2 cut(s)	941, 1550
MroNI	GCCGGC	1 cut(s)	320
MscI	TGGCCA	2 cut(s)	941, 1550
MseI	TTAA	5 cut(s)	474, 654, 849, 963, 1464
MslI	CAYNNNNRTG	2 cut(s)	707, 1466
Msp20I	TGGCCA	2 cut(s)	941, 1550
MspI	CCGG	7 cut(s)	28, 288, 321, 460, 581, 1042, 1268
MspR9I	CCNGG	8 cut(s)	28, 86, 275, 289, 461, 1043, 1268, 1285
MvaI	CCWGG	3 cut(s)	86, 275, 1285
NaeI	GCCGGC	1 cut(s)	322
NarI	GGCGCC	2 cut(s)	204, 533
NciI	CCSGG	5 cut(s)	28, 289, 461, 1043, 1268
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	3 cut(s)	154, 436, 1132
NlaIV	GGNNCC	9 cut(s)	142, 205, 298, 534, 570, 631, 700, 1264, 1430
NmeAIII	GCCGAG	2 cut(s)	117, 603
NmuCI	GTSAC	3 cut(s)	179, 913, 1414
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 630, 642
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	464, 733, 1120
PflFI	GACNNNGTC	3 cut(s)	46, 122, 1141
PflMI	CCANNNNNTGG	1 cut(s)	1494
PfoI	TCCNGGA	1 cut(s)	1041
PkrI	GCNGC	7 cut(s)	22, 103, 244, 283, 286, 691, 1515
PleI	GAGTC	6 cut(s)	55, 380, 519, 997, 1087, 1335
PluTI	GGCGCC	2 cut(s)	207, 536
PpsI	GAGTC	6 cut(s)	55, 380, 519, 997, 1087, 1335
PpuMI	RGGWCCY	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	1412
PshBI	ATTAAT	1 cut(s)	1464
Psp124BI	GAGCTC	3 cut(s)	264, 453, 1281
Psp1406I	AACGTT	1 cut(s)	876
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	3 cut(s)	84, 273, 1283
PspFI	CCCAGC	2 cut(s)	1054, 1391
PspGI	CCWGG	3 cut(s)	84, 273, 1283
PspN4I	GGNNCC	9 cut(s)	142, 205, 298, 534, 570, 631, 700, 1264, 1430
PspPI	GGNCC	6 cut(s)	140, 229, 436, 568, 592, 698
PspPPI	RGGWCCY	1 cut(s)	229
PstNI	CAGNNNCTG	2 cut(s)	917, 1519
PsyI	GACNNNGTC	3 cut(s)	46, 122, 1141
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	2 cut(s)	707, 1466
SacI	GAGCTC	3 cut(s)	264, 453, 1281
SalI	GTCGAC	4 cut(s)	56, 416, 635, 862
SaqAI	TTAA	5 cut(s)	474, 654, 849, 963, 1464
SatI	GCNGC	7 cut(s)	21, 102, 243, 282, 285, 690, 1514
Sau3AI	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
Sau96I	GGNCC	6 cut(s)	140, 229, 436, 568, 592, 698
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	6 cut(s)	56, 380, 520, 997, 1088, 1336
ScrFI	CCNGG	8 cut(s)	28, 86, 275, 289, 461, 1043, 1268, 1285
SduI	GDGCHC	6 cut(s)	264, 453, 488, 1267, 1281, 1532
SfaNI	GCATC	5 cut(s)	240, 372, 538, 898, 1195
SfoI	GGCGCC	2 cut(s)	205, 534
SgrDI	CGTCGACG	2 cut(s)	416, 635
SinI	GGWCC	4 cut(s)	229, 568, 592, 698
SmiMI	CAYNNNNRTG	2 cut(s)	707, 1466
SmlI	CTYRAG	2 cut(s)	332, 1358
SmoI	CTYRAG	2 cut(s)	332, 1358
Sse9I	AATT	3 cut(s)	585, 829, 1009
SspDI	GGCGCC	2 cut(s)	203, 532
SstI	GAGCTC	3 cut(s)	264, 453, 1281
StyD4I	CCNGG	8 cut(s)	26, 84, 273, 287, 459, 1041, 1266, 1283
StyI	CCWWGG	2 cut(s)	432, 1087
TaaI	ACNGT	6 cut(s)	112, 179, 307, 376, 634, 1597
TaiI	ACGT	6 cut(s)	57, 81, 186, 423, 879, 1145
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	3 cut(s)	585, 829, 1009
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	5 cut(s)	23, 104, 245, 284, 287
TfiI	GAWTC	3 cut(s)	464, 733, 1120
Tru1I	TTAA	5 cut(s)	474, 654, 849, 963, 1464
Tru9I	TTAA	5 cut(s)	474, 654, 849, 963, 1464
TscAI	CASTG	8 cut(s)	344, 493, 558, 567, 918, 1423, 1462, 1524
TseFI	GTSAC	3 cut(s)	179, 913, 1414
TseI	GCWGC	2 cut(s)	689, 1513
Tsp45I	GTSAC	3 cut(s)	179, 913, 1414
TspRI	CASTG	8 cut(s)	344, 493, 558, 567, 918, 1423, 1462, 1524
Tth111I	GACNNNGTC	3 cut(s)	46, 122, 1141
Van91I	CCANNNNNTGG	1 cut(s)	1494
VpaK11BI	GGWCC	4 cut(s)	229, 568, 592, 698
VspI	ATTAAT	1 cut(s)	1464
XcmI	CCANNNNNNNNNTGG	3 cut(s)	658, 692, 955
XmiI	GTMKAC	4 cut(s)	57, 417, 636, 863
ZraI	GACGTC	3 cut(s)	79, 184, 421
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.