Rorug01G0167400

Rgp1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007398
Physical Location & Seq
Forward (+)
22905459 .. 22907856
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0167400.1

Sequence Viewer

Length: 1542 bp
ATGGTGCCCCTAATGCTTCAAATTCATAATGTTCCTTCCCTTCCTCTCTATACTTCTCTGATTGCGCTAGTTATCCTAGTTCTATATCGGAAGAGATTGAAAAGCAGCCATACCTCAAGTCTTAGTCTGCCTCCAGGTCCGCGGAAGCTACCCGTTATAGGAAACTTGCTTCAGTTGGTAGGCTCGCTACCACATCATTCTCTAAGAGACTTGGCCAAGAGGTATGGACCAATCATGCACATCAAAGTGGGACAAGTATCAGCCGTAGTGATTTCATCTCCGGAACTAGCTGAAGAGGTGTTGAGGACACATGAAACTGCCTTCTCGCAACGCCCCACTGTTTTTGCTATTGAGGTTTTGTCTTATGATCTTTCAAGTATCCTCTTTTGTCCTAATAATGATTACTGGAGGCAAATGCGCAAGATTTGCGTGTCGGAGCTCTTAAGTACAAAGCGTGTGCATTCTTTTGCATCAATAAGAGAAGAAGAGGCATGGAATCTTGTCGAAACAGTTTATTCTTCAGCATCACAGCCACAGCTAGTGGTCAACCTCAGCGAGATGATTTTCTCCATGCAAAACGGCATCACTGCCCGGGCAGCCTTGGGGAAGAAGTGCAAACATGAACAAGAATTTACCTCATTGATCGATGAAATCAACCAGCTTGCAGGAGGCTTTGCAGTGCCAGATTTGTTCCCTTCTCTCAAATTCCTTCGTCATGTCACACGTTTCAAGCCTTCCCTTGAGAAAATACACGGAAAAATGGACAGGATGCTTGATGAAATCATCAATGATCATAAAGTGAAAAGAGAATCATCAGCTGGTGATGATCCTCTGCAAGAAGATATAGTTGATGTGCTTTTACAACTTCAGGAGTGTAGTGATCAGATCCAGCTTGATGTCAAAACCAAGCATATCAAAGCTATCACAATGGACATGTATACGTCTGGAAGTGAAACTTCAGCAACTACCACAGAATGGGCAATGGCAGAACTAGTGAGAAATCCAAGAGTAATGGAGAAAGCACAAGCCGAGATACGACAACTTCTTGCAGGCAAGAAGAAAATCCATGATGCAGACATTAAAAAACTAGACTACCTGAAATTGGTCGTAAAGGAAACTCTACGGTTACACCCTCCTCTTGCCTTAATCGCAAGACAAGCCACTCAGACATGTAAAATTAGTGGATATGATATACCATCTGAAACCAAACTACTGGTCAATGCTTGGGCCATTGGGAGAGACCCAAAGCATTGGGGGGATAGTGCTGATTGCTTTGAGCCTGAGAGGTTCCAAGGTTCTTCCATTGATTTCAAAGGGACCAACTTTGAATTTATTCCATTTGGGGCTGGTAAGAGAATGTGTCCAGGCATATCATTTGGAACTGCATCGGTTGAGATTGCACTTGCTCAACTGTTGTACCACTTCAACTGGAAACTCCCCAATGGGACAAAATTAGAAGAGCTTGACATGACTGAATCAATGGGAATGAGCGCAAGGAAGAAGAATGACTTGAAAGTTATTGCCATTCCTTACATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rgp1

Protein Analysis

513

Amino Acids

57.68

Weight (kDa)

8.49

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 44 - 504 4.4e-99 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 975
AccI GTMKAC 1 cut(s) 938
AccII CGCG 1 cut(s) 142
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 2 cut(s) 140, 142
AclWI GGATC 2 cut(s) 821, 880
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 4 cut(s) 21, 629, 704, 1328
AcuI CTGAAG 5 cut(s) 155, 312, 504, 851, 942
AfaI GTAC 2 cut(s) 448, 1418
AfiI CCNNNNNNNGG 3 cut(s) 158, 975, 1102
AflII CTTAAG 1 cut(s) 442
AflIII ACRYGT 3 cut(s) 722, 933, 1169
AgsI TTSAA 8 cut(s) 20, 100, 375, 730, 1312, 1328, 1426, 1513
AhlI ACTAGT 1 cut(s) 991
AjnI CCWGG 2 cut(s) 133, 1363
AluBI AGCT 9 cut(s) 148, 290, 439, 538, 661, 818, 892, 920, 1462
AluI AGCT 9 cut(s) 148, 290, 439, 538, 661, 818, 892, 920, 1462
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 2 cut(s) 201, 1233
AlwI GGATC 2 cut(s) 821, 880
Ama87I CYCGRG 1 cut(s) 591
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 2 cut(s) 213, 1227
ApeKI GCWGC 2 cut(s) 105, 596
ApoI RAATTY 4 cut(s) 21, 629, 704, 1328
ArsI GACNNNNNNTTYG 2 cut(s) 1200, 1232
Asp700I GAANNNNTTC 1 cut(s) 1332
AspLEI GCGC 3 cut(s) 67, 420, 1493
AspS9I GGNCC 4 cut(s) 137, 227, 1227, 1317
AsuC2I CCSGG 2 cut(s) 592, 593
AsuHPI GGTGA 1 cut(s) 833
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 3 cut(s) 137, 227, 1317
BaeGI GKGCMC 1 cut(s) 9
BaeI ACNNNNGTAYC 2 cut(s) 1400, 1433
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 441
BbvCI CCTCAGC 1 cut(s) 551
BbvI GCAGC 2 cut(s) 117, 608
BccI CCATC 1 cut(s) 1204
BceAI ACGGC 2 cut(s) 248, 595
BciT130I CCWGG 2 cut(s) 135, 1365
BciVI GTATCC 1 cut(s) 389
BclI TGATCA 2 cut(s) 790, 880
BcnI CCSGG 2 cut(s) 592, 593
BcoDI GTCTC 2 cut(s) 201, 1233
BcuI ACTAGT 1 cut(s) 991
BfaI CTAG 6 cut(s) 68, 77, 287, 539, 992, 1088
BfrI CTTAAG 1 cut(s) 442
BfuI GTATCC 1 cut(s) 389
BisI GCNGC 2 cut(s) 106, 597
BlsI GCNGC 2 cut(s) 107, 598
Bme1390I CCNGG 4 cut(s) 135, 592, 593, 1365
Bme18I GGWCC 3 cut(s) 137, 227, 1317
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 4 cut(s) 137, 227, 1227, 1317
BmiI GGNNCC 3 cut(s) 6, 1289, 1318
BmrFI CCNGG 4 cut(s) 135, 592, 593, 1365
BmsI GCATC 6 cut(s) 479, 533, 591, 759, 1060, 1394
BpmI CTGGAG 2 cut(s) 117, 427
Bpu10I CCTNAGC 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 100, 761
BpuMI CCSGG 2 cut(s) 592, 593
Bsa29I ATCGAT 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 1233
BsaJI CCNNGG 4 cut(s) 140, 591, 600, 1291
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 975, 1102
Bse1I ACTGG 3 cut(s) 410, 1218, 1433
Bse3DI GCAATG 1 cut(s) 987
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 2 cut(s) 135, 1365
BseCI ATCGAT 1 cut(s) 645
BseDI CCNNGG 4 cut(s) 140, 591, 600, 1291
BseGI GGATG 1 cut(s) 774
BseLI CCNNNNNNNGG 3 cut(s) 158, 975, 1102
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 3 cut(s) 565, 1178, 1272
BseNI ACTGG 3 cut(s) 410, 1218, 1433
BseRI GAGGAG 1 cut(s) 1125
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 117, 608
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 215, 1229
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 645
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 2 cut(s) 281, 592
BslFI GGGAC 3 cut(s) 264, 1330, 1459
BslI CCNNNNNNNGG 3 cut(s) 158, 975, 1102
BsmAI GTCTC 2 cut(s) 201, 1233
BsmFI GGGAC 3 cut(s) 264, 1330, 1459
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 2 cut(s) 215, 1229
Bso31I GGTCTC 1 cut(s) 1233
BsoBI CYCGRG 1 cut(s) 591
Bsp1286I GDGCHC 2 cut(s) 9, 441
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 6 cut(s) 367, 642, 790, 826, 880, 885
BspACI CCGC 2 cut(s) 140, 142
BspANI GGCC 2 cut(s) 215, 1229
BspCNI CTCAG 3 cut(s) 564, 1177, 1273
BspDI ATCGAT 1 cut(s) 645
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 6, 1289, 1318
BspPI GGATC 2 cut(s) 821, 880
BspQI GCTCTTC 1 cut(s) 1452
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 1233
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 3 cut(s) 410, 1218, 1433
BssECI CCNNGG 4 cut(s) 140, 591, 600, 1291
BssMI GATC 6 cut(s) 367, 642, 790, 826, 880, 885
BssNAI GTATAC 1 cut(s) 939
BssT1I CCWWGG 2 cut(s) 600, 1291
Bst1107I GTATAC 1 cut(s) 939
Bst2UI CCWGG 2 cut(s) 135, 1365
Bst4CI ACNGT 4 cut(s) 340, 511, 1125, 1413
Bst6I CTCTTC 4 cut(s) 86, 288, 480, 1452
BstAFI CTTAAG 1 cut(s) 442
BstAPI GCANNNNNTGC 1 cut(s) 426
BstC8I GCNNGC 3 cut(s) 185, 663, 1051
BstDEI CTNAG 5 cut(s) 122, 203, 551, 1164, 1281
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 774
BstFNI CGCG 1 cut(s) 142
BstHHI GCGC 3 cut(s) 67, 420, 1493
BstKTI GATC 6 cut(s) 370, 645, 793, 829, 883, 888
BstMAI GTCTC 2 cut(s) 201, 1233
BstMBI GATC 6 cut(s) 367, 642, 790, 826, 880, 885
BstMWI GCNNNNNNNGC 5 cut(s) 13, 426, 596, 1148, 1157
BstNI CCWGG 2 cut(s) 135, 1365
BstNSI RCATGY 2 cut(s) 937, 1173
BstSCI CCNGG 4 cut(s) 133, 590, 591, 1363
BstSLI GKGCMC 1 cut(s) 9
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 117, 608
BstX2I RGATCY 1 cut(s) 885
BstXI CCANNNNNNTGG 2 cut(s) 1213, 1251
BstYI RGATCY 1 cut(s) 885
BstZ17I GTATAC 1 cut(s) 939
Bsu15I ATCGAT 1 cut(s) 645
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 2 cut(s) 215, 1229
BsuTUI ATCGAT 1 cut(s) 645
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 1 cut(s) 774
BtsI GCAGTG 2 cut(s) 585, 684
BtsIMutI CAGTG 3 cut(s) 336, 585, 684
Cac8I GCNNGC 3 cut(s) 185, 663, 1051
CfoI GCGC 3 cut(s) 67, 420, 1493
Cfr13I GGNCC 4 cut(s) 137, 227, 1227, 1317
Cfr42I CCGCGG 1 cut(s) 143
Cfr9I CCCGGG 1 cut(s) 591
ClaI ATCGAT 1 cut(s) 645
Csp6I GTAC 2 cut(s) 447, 1417
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviQI GTAC 2 cut(s) 447, 1417
DdeI CTNAG 5 cut(s) 122, 203, 551, 1164, 1281
DpnI GATC 6 cut(s) 369, 644, 792, 828, 882, 887
DpnII GATC 6 cut(s) 367, 642, 790, 826, 880, 885
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 4 cut(s) 86, 288, 480, 1452
EarI CTCTTC 4 cut(s) 86, 288, 480, 1452
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 2 cut(s) 600, 1291
Eco24I GRGCYC 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 1233
Eco47I GGWCC 3 cut(s) 137, 227, 1317
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 5 cut(s) 155, 312, 504, 851, 942
Eco88I CYCGRG 1 cut(s) 591
EcoICRI GAGCTC 1 cut(s) 439
EcoRII CCWGG 2 cut(s) 133, 1363
EcoT14I CCWWGG 2 cut(s) 600, 1291
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 2 cut(s) 600, 1291
FalI AAGNNNNNCTT 4 cut(s) 940, 972, 1493, 1525
FaqI GGGAC 3 cut(s) 264, 1330, 1459
FbaI TGATCA 2 cut(s) 790, 880
FblI GTMKAC 1 cut(s) 938
Fnu4HI GCNGC 2 cut(s) 106, 597
FokI GGATG 1 cut(s) 781
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 2 cut(s) 106, 597
FspBI CTAG 6 cut(s) 68, 77, 287, 539, 992, 1088
FspI TGCGCA 1 cut(s) 419
GlaI GCGC 3 cut(s) 66, 419, 1492
GluI GCNGC 2 cut(s) 106, 597
GsuI CTGGAG 2 cut(s) 117, 427
HaeIII GGCC 2 cut(s) 215, 1229
HapII CCGG 2 cut(s) 281, 592
HhaI GCGC 3 cut(s) 67, 420, 1493
Hin6I GCGC 3 cut(s) 65, 418, 1491
HinP1I GCGC 3 cut(s) 65, 418, 1491
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 3 cut(s) 496, 809, 1475
HpaII CCGG 2 cut(s) 281, 592
HphI GGTGA 1 cut(s) 833
Hpy166II GTNNAC 2 cut(s) 547, 939
Hpy188I TCNGA 6 cut(s) 60, 90, 436, 885, 1167, 1201
Hpy188III TCNNGA 3 cut(s) 281, 869, 945
Hpy8I GTNNAC 2 cut(s) 547, 939
HpyAV CCTTC 6 cut(s) 45, 50, 331, 705, 719, 744
HpyCH4III ACNGT 4 cut(s) 340, 511, 1125, 1413
HpyCH4IV ACGT 2 cut(s) 724, 941
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 426, 596, 1148, 1157
HpyF3I CTNAG 5 cut(s) 122, 203, 551, 1164, 1281
HpySE526I ACGT 2 cut(s) 724, 941
HspAI GCGC 3 cut(s) 65, 418, 1491
Kpn2I TCCGGA 1 cut(s) 280
Ksp22I TGATCA 2 cut(s) 790, 880
KspI CCGCGG 1 cut(s) 143
Kzo9I GATC 6 cut(s) 367, 642, 790, 826, 880, 885
LguI GCTCTTC 1 cut(s) 1452
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 2 cut(s) 117, 608
LweI GCATC 6 cut(s) 479, 533, 591, 759, 1060, 1394
MaeI CTAG 6 cut(s) 68, 77, 287, 539, 992, 1088
MaeII ACGT 2 cut(s) 724, 941
MaeIII GTNAC 2 cut(s) 718, 1125
MalI GATC 6 cut(s) 369, 644, 792, 828, 882, 887
MboI GATC 6 cut(s) 367, 642, 790, 826, 880, 885
MflI RGATCY 1 cut(s) 885
MhlI GDGCHC 2 cut(s) 9, 441
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 7 cut(s) 21, 629, 704, 1100, 1176, 1328, 1451
MluNI TGGCCA 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 414
Mox20I TGGCCA 1 cut(s) 215
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 1332
MscI TGGCCA 1 cut(s) 215
MseI TTAA 3 cut(s) 443, 1080, 1145
MslI CAYNNNNRTG 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 2 cut(s) 142, 818
MspCI CTTAAG 1 cut(s) 442
MspI CCGG 2 cut(s) 281, 592
MspR9I CCNGG 4 cut(s) 135, 592, 593, 1365
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 2 cut(s) 135, 1365
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 5 cut(s) 13, 426, 596, 1148, 1157
NciI CCSGG 2 cut(s) 592, 593
NdeII GATC 6 cut(s) 367, 642, 790, 826, 880, 885
NlaIV GGNNCC 3 cut(s) 6, 1289, 1318
NmeAIII GCCGAG 1 cut(s) 1054
NmuCI GTSAC 1 cut(s) 718
NsbI TGCGCA 1 cut(s) 419
NspI RCATGY 2 cut(s) 937, 1173
PciI ACATGT 2 cut(s) 933, 1169
PciSI GCTCTTC 1 cut(s) 1452
PctI GAATGC 1 cut(s) 460
PdmI GAANNNNTTC 1 cut(s) 1332
PfeI GAWTC 3 cut(s) 496, 809, 1475
PflMI CCANNNNNTGG 1 cut(s) 975
PkrI GCNGC 2 cut(s) 107, 598
PscI ACATGT 2 cut(s) 933, 1169
Psp124BI GAGCTC 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 133, 1363
PspGI CCWGG 2 cut(s) 133, 1363
PspN4I GGNNCC 3 cut(s) 6, 1289, 1318
PspPI GGNCC 4 cut(s) 137, 227, 1227, 1317
PsuI RGATCY 1 cut(s) 885
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 2 cut(s) 448, 1418
RsaNI GTAC 2 cut(s) 447, 1417
RseI CAYNNNNRTG 1 cut(s) 245
SacI GAGCTC 1 cut(s) 441
SacII CCGCGG 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 1452
SaqAI TTAA 3 cut(s) 443, 1080, 1145
SatI GCNGC 2 cut(s) 106, 597
Sau3AI GATC 6 cut(s) 367, 642, 790, 826, 880, 885
Sau96I GGNCC 4 cut(s) 137, 227, 1227, 1317
ScrFI CCNGG 4 cut(s) 135, 592, 593, 1365
SduI GDGCHC 2 cut(s) 9, 441
SfaNI GCATC 6 cut(s) 479, 533, 591, 759, 1060, 1394
Sfr303I CCGCGG 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 143
SinI GGWCC 3 cut(s) 137, 227, 1317
SmaI CCCGGG 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 3 cut(s) 115, 442, 740
SmoI CTYRAG 3 cut(s) 115, 442, 740
SpeI ACTAGT 1 cut(s) 991
SrfI GCCCGGGC 1 cut(s) 593
Sse9I AATT 7 cut(s) 21, 629, 704, 1100, 1176, 1328, 1451
SsiI CCGC 2 cut(s) 140, 142
SspMI CTAG 6 cut(s) 68, 77, 287, 539, 992, 1088
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 4 cut(s) 133, 590, 591, 1363
StyI CCWWGG 2 cut(s) 600, 1291
TaaI ACNGT 4 cut(s) 340, 511, 1125, 1413
TaiI ACGT 2 cut(s) 727, 944
TaqI TCGA 2 cut(s) 504, 645
TasI AATT 7 cut(s) 21, 629, 704, 1100, 1176, 1328, 1451
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 3 cut(s) 496, 809, 1475
Tru1I TTAA 3 cut(s) 443, 1080, 1145
Tru9I TTAA 3 cut(s) 443, 1080, 1145
TscAI CASTG 3 cut(s) 343, 592, 684
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 2 cut(s) 105, 596
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 6 cut(s) 14, 264, 327, 636, 663, 792
TspGWI ACGGA 1 cut(s) 768
TspMI CCCGGG 1 cut(s) 591
TspRI CASTG 3 cut(s) 343, 592, 684
Van91I CCANNNNNTGG 1 cut(s) 975
Vha464I CTTAAG 1 cut(s) 442
VpaK11BI GGWCC 3 cut(s) 137, 227, 1317
XapI RAATTY 4 cut(s) 21, 629, 704, 1328
XceI RCATGY 2 cut(s) 937, 1173
XmaI CCCGGG 1 cut(s) 591
XmiI GTMKAC 1 cut(s) 938
XmnI GAANNNNTTC 1 cut(s) 1332
XspI CTAG 6 cut(s) 68, 77, 287, 539, 992, 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.