Rh1BG150800

Rgp1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007398
Physical Location & Seq
Reverse (-)
24768583 .. 24778975
10393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG150800.1

Sequence Viewer

Length: 1332 bp
ATGTTGCCGCGTAGATTATCCGCCATTTTTGGAGGCCTCGCTTCCACCACCACGACTGTAGCTACCGAGCTCCAGCCTACTCTCAAGTTCCAAACCGACAGGGAAGTCTACCGCCCCGGCGATCAAATCGTCATCACCATTGAGATTTCCAACCCTAGCAACAATGACGACATGGCGTATTCGCTGCTGATCGAGCGCCTGGGGTTTGAGATTAAAGGGATTGAGAAGCTCGATTCGCAGTGGTTCGCCACGCAGAAGCCTGTGCCTGGATCCAAACAGAGAAGAGGTGAATATGTGTTCATGGAAGCCTCGACGCCGGCGCTGGTTACCAATCAAATCGTTTCGCCAGGGGCCACAAAATCATACGTGGTGCGGTCAGTGTTGCCAAGCATTATACCGCCATCTTACAAAGGTGCTACCATTCGCTATATGTACTATGTTCGGAGTACAATGTCTGGACAATGGCTAATACTGGAGAATGCCCACTCTCGTGGAGAATCAGTTAAAGATTTTCCAGAAATGGAAGCTCGTACTCCATTACAAGTATGGGTCACTCAGAAGACCAGTGGCTTGGGAACAGAAGAGGGTCAAAGTGATGGTATTGTTCCTTCGGCAACCATGCAAATCGATATGTACTGGAAAGAGATGGATGGTGACTCTGAATGGGTGAGAGCAAATGATATATATGATGGGATTGAGGATGGCTATGAAAGCTCAAGGGATGAGATCTCATCCGTTTCGTCTTACAATCCTATGAAAGATCATATGAATAGAACCTTTGGAAGTTCATTATCATTGCAATCAGCAAGGTCTTCAAATAAGGATACATATCATGAAGGAGAACGCACAAGTCTATCTTCAAATCTGGCACTACCACTGCTCTCCGTTGCTGAAGTCATGTATGATACTGGTGCTGATCTCCAGTCGCCCAAGAATTCCTCTGCCTTAGGCTCTCCAGGCAAGCAGCAGAAACGTACAAAGTCCCTTCCTTTAGAAGATGAAGCAAGAGCATCTACTTCACCAGCAGCTGGTGCTGCTGAAACCTTAGCATCAGAAGGCTTTATTCGAGGGAGGTCTTACAACATCCGGCTCGACGACAAAGTTCTGCTTAGATTTTCCCCGAAAAATTCTGATTCTAATTATTACTTCAGTGATATGATTGGTGGAACTCTTACTTTCTTTCATGAAGAAGGAGCTAGAAGATGCCTTGAGGTTTCTATAACATTGGAGACTTCAGAAACTATTAGTCGGCGATATGTCCATCCTTCTCGGAAGAATTCCCCTACAATTACGAAGGTAGGACATTTTTATTTCAAGCTGTTAATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rgp1

Protein Analysis

443

Amino Acids

49.33

Weight (kDa)

5.72

Isoelectric Point (pI)

57.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 1028
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 10
AciI CCGC 5 cut(s) 8, 21, 112, 373, 398
AclWI GGATC 2 cut(s) 264, 277
AcsI RAATTY 3 cut(s) 934, 1126, 1276
AcuI CTGAAG 3 cut(s) 912, 1132, 1218
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 5 cut(s) 434, 448, 532, 635, 976
AfiI CCNNNNNNNGG 2 cut(s) 266, 1028
AgsI TTSAA 4 cut(s) 816, 861, 1315, 1328
AjnI CCWGG 4 cut(s) 198, 265, 346, 955
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 8 cut(s) 62, 70, 229, 527, 714, 1028, 1196, 1318
AluI AGCT 8 cut(s) 62, 70, 229, 527, 714, 1028, 1196, 1318
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 1223
AlwI GGATC 2 cut(s) 264, 277
AlwNI CAGNNNCTG 1 cut(s) 1028
AoxI GGCC 2 cut(s) 34, 351
ApeKI GCWGC 4 cut(s) 184, 964, 1025, 1034
ApoI RAATTY 3 cut(s) 934, 1126, 1276
AspLEI GCGC 2 cut(s) 198, 322
AspS9I GGNCC 1 cut(s) 351
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 5 cut(s) 127, 299, 665, 679, 1011
AxyI CCTNAGG 1 cut(s) 946
BamHI GGATCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 72
BarI GAAGNNNNNNTAC 2 cut(s) 592, 624
BauI CACGAG 1 cut(s) 489
BbsI GAAGAC 2 cut(s) 566, 804
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 4 cut(s) 171, 976, 1021, 1037
BccI CCATC 7 cut(s) 409, 590, 640, 644, 683, 695, 1269
BciT130I CCWGG 4 cut(s) 200, 267, 348, 957
BciVI GTATCC 1 cut(s) 817
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 1223
BfaI CTAG 2 cut(s) 156, 1197
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 2 cut(s) 199, 323
BfuI GTATCC 1 cut(s) 817
BglII AGATCT 1 cut(s) 726
BisI GCNGC 5 cut(s) 8, 185, 965, 1026, 1035
BlsI GCNGC 5 cut(s) 9, 186, 966, 1027, 1036
Bme1390I CCNGG 5 cut(s) 117, 200, 267, 348, 957
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 271, 352
BmrFI CCNGG 5 cut(s) 117, 200, 267, 348, 957
BmsI GCATC 3 cut(s) 1019, 1058, 1193
BpiI GAAGAC 2 cut(s) 566, 804
BpmI CTGGAG 4 cut(s) 56, 494, 905, 939
Bpu10I CCTNAGC 1 cut(s) 1045
BpuEI CTTGAG 3 cut(s) 68, 700, 1229
BpuMI CCSGG 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 627
BsaAI YACGTR 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 828
BsaHI GRCGYC 1 cut(s) 314
BsaJI CCNNGG 3 cut(s) 115, 199, 347
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 1028
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 5 cut(s) 477, 564, 641, 913, 922
Bse21I CCTNAGG 1 cut(s) 946
Bse3DI GCAATG 1 cut(s) 794
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 4 cut(s) 200, 267, 348, 957
BseCI ATCGAT 1 cut(s) 627
BseDI CCNNGG 3 cut(s) 115, 199, 347
BseGI GGATG 6 cut(s) 655, 706, 727, 731, 1083, 1261
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 2 cut(s) 266, 1028
BseMI GCAATG 1 cut(s) 794
BseMII CTCAG 1 cut(s) 569
BseNI ACTGG 5 cut(s) 477, 564, 641, 913, 922
BseXI GCAGC 4 cut(s) 171, 976, 1021, 1037
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 36, 353
BshVI ATCGAT 1 cut(s) 627
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 3 cut(s) 117, 317, 1087
BslFI GGGAC 1 cut(s) 967
BslI CCNNNNNNNGG 2 cut(s) 266, 1028
BsmAI GTCTC 1 cut(s) 1223
BsmFI GGGAC 1 cut(s) 967
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 2 cut(s) 36, 353
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 6 cut(s) 121, 189, 269, 726, 760, 916
BspACI CCGC 5 cut(s) 8, 21, 112, 373, 398
BspANI GGCC 2 cut(s) 36, 353
BspCNI CTCAG 1 cut(s) 568
BspDI ATCGAT 1 cut(s) 627
BspFNI CGCG 1 cut(s) 10
BspHI TCATGA 2 cut(s) 832, 1183
BspLI GGNNCC 2 cut(s) 271, 352
BspPI GGATC 2 cut(s) 264, 277
BsrDI GCAATG 1 cut(s) 794
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 5 cut(s) 477, 564, 641, 913, 922
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 3 cut(s) 115, 199, 347
BssMI GATC 6 cut(s) 121, 189, 269, 726, 760, 916
BssNI GRCGYC 1 cut(s) 314
BssSI CACGAG 1 cut(s) 489
Bst2BI CACGAG 1 cut(s) 489
Bst2UI CCWGG 4 cut(s) 200, 267, 348, 957
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 277, 576
BstACI GRCGYC 1 cut(s) 314
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstBAI YACGTR 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 318, 962
BstDEI CTNAG 4 cut(s) 555, 946, 1045, 1109
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 6 cut(s) 655, 706, 727, 731, 1083, 1261
BstFNI CGCG 1 cut(s) 10
BstH2I RGCGCY 2 cut(s) 199, 323
BstHHI GCGC 2 cut(s) 198, 322
BstKTI GATC 6 cut(s) 124, 192, 272, 729, 763, 919
BstMAI GTCTC 1 cut(s) 1223
BstMBI GATC 6 cut(s) 121, 189, 269, 726, 760, 916
BstMWI GCNNNNNNNGC 6 cut(s) 193, 235, 711, 957, 1031, 1034
BstNI CCWGG 4 cut(s) 200, 267, 348, 957
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 5 cut(s) 115, 198, 265, 346, 955
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 4 cut(s) 171, 976, 1021, 1037
BstV2I GAAGAC 2 cut(s) 566, 804
BstX2I RGATCY 2 cut(s) 269, 726
BstXI CCANNNNNNTGG 2 cut(s) 491, 571
BstYI RGATCY 2 cut(s) 269, 726
Bsu15I ATCGAT 1 cut(s) 627
Bsu36I CCTNAGG 1 cut(s) 946
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 2 cut(s) 36, 353
BsuTUI ATCGAT 1 cut(s) 627
BtsCI GGATG 6 cut(s) 655, 706, 727, 731, 1083, 1261
BtsI GCAGTG 2 cut(s) 245, 875
BtsIMutI CAGTG 5 cut(s) 245, 384, 571, 875, 1156
Cac8I GCNNGC 2 cut(s) 318, 962
CaiI CAGNNNCTG 1 cut(s) 1028
CciI TCATGA 2 cut(s) 832, 1183
CfoI GCGC 2 cut(s) 198, 322
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 351
ClaI ATCGAT 1 cut(s) 627
CseI GACGC 1 cut(s) 322
Csp6I GTAC 5 cut(s) 433, 447, 531, 634, 975
CviAII CATG 6 cut(s) 172, 301, 619, 833, 898, 1184
CviQI GTAC 5 cut(s) 433, 447, 531, 634, 975
DdeI CTNAG 4 cut(s) 555, 946, 1045, 1109
DpnI GATC 6 cut(s) 123, 191, 271, 728, 762, 918
DpnII GATC 6 cut(s) 121, 189, 269, 726, 760, 916
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 277, 576
EarI CTCTTC 2 cut(s) 277, 576
EciI GGCGGA 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 70
Eco147I AGGCCT 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 3 cut(s) 912, 1132, 1218
Eco81I CCTNAGG 1 cut(s) 946
Eco91I GGTNACC 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 325
EcoRI GAATTC 2 cut(s) 934, 1276
EcoRII CCWGG 4 cut(s) 198, 265, 346, 955
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 6 cut(s) 175, 304, 622, 836, 901, 1187
FalI AAGNNNNNCTT 4 cut(s) 841, 873, 1092, 1124
FaqI GGGAC 1 cut(s) 967
FatI CATG 6 cut(s) 171, 300, 618, 832, 897, 1183
FauNDI CATATG 1 cut(s) 765
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 5 cut(s) 8, 185, 965, 1026, 1035
FokI GGATG 6 cut(s) 662, 713, 718, 734, 1070, 1248
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 5 cut(s) 8, 185, 965, 1026, 1035
FspBI CTAG 2 cut(s) 156, 1197
GlaI GCGC 2 cut(s) 197, 321
GluI GCNGC 5 cut(s) 8, 185, 965, 1026, 1035
GsuI CTGGAG 4 cut(s) 56, 494, 905, 939
HaeII RGCGCY 2 cut(s) 199, 323
HaeIII GGCC 2 cut(s) 36, 353
HapII CCGG 3 cut(s) 117, 317, 1087
HgaI GACGC 1 cut(s) 322
HhaI GCGC 2 cut(s) 198, 322
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 6 cut(s) 175, 304, 622, 836, 901, 1187
Hin6I GCGC 2 cut(s) 196, 320
HinP1I GCGC 2 cut(s) 196, 320
HinfI GANTC 4 cut(s) 233, 497, 656, 1133
HpaII CCGG 3 cut(s) 117, 317, 1087
HphI GGTGA 5 cut(s) 127, 299, 665, 679, 1011
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 7 cut(s) 444, 558, 661, 1054, 1132, 1237, 1272
Hpy188III TCNNGA 4 cut(s) 456, 515, 833, 1184
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 2 cut(s) 316, 1097
HpyAV CCTTC 7 cut(s) 618, 830, 995, 1049, 1184, 1275, 1288
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 366, 973
HpyCH4V TGCA 2 cut(s) 622, 799
HpyF10VI GCNNNNNNNGC 6 cut(s) 193, 235, 711, 957, 1031, 1034
HpyF3I CTNAG 4 cut(s) 555, 946, 1045, 1109
HpySE526I ACGT 2 cut(s) 366, 973
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 6 cut(s) 175, 304, 622, 836, 901, 1187
HspAI GCGC 2 cut(s) 196, 320
KroI GCCGGC 1 cut(s) 316
KroNI GCCGGC 1 cut(s) 318
Kzo9I GATC 6 cut(s) 121, 189, 269, 726, 760, 916
LmnI GCTCC 2 cut(s) 75, 1193
Lsp1109I GCAGC 4 cut(s) 171, 976, 1021, 1037
LweI GCATC 3 cut(s) 1019, 1058, 1193
MaeI CTAG 2 cut(s) 156, 1197
MaeII ACGT 2 cut(s) 366, 973
MaeIII GTNAC 3 cut(s) 325, 550, 653
MalI GATC 6 cut(s) 123, 191, 271, 728, 762, 918
MboI GATC 6 cut(s) 121, 189, 269, 726, 760, 916
MboII GAAGA 9 cut(s) 294, 571, 593, 804, 849, 1007, 1199, 1212, 1285
MflI RGATCY 2 cut(s) 269, 726
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 6 cut(s) 934, 1126, 1138, 1276, 1287, 1323
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 1 cut(s) 174
MreI CGCCGGCG 1 cut(s) 316
MroNI GCCGGC 1 cut(s) 316
MseI TTAA 3 cut(s) 213, 504, 1322
MslI CAYNNNNRTG 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 1028
MspI CCGG 3 cut(s) 117, 317, 1087
MspR9I CCNGG 5 cut(s) 117, 200, 267, 348, 957
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 4 cut(s) 200, 267, 348, 957
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 6 cut(s) 193, 235, 711, 957, 1031, 1034
NaeI GCCGGC 1 cut(s) 318
NciI CCSGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 765
NdeII GATC 6 cut(s) 121, 189, 269, 726, 760, 916
NgoMIV GCCGGC 1 cut(s) 316
NlaIII CATG 6 cut(s) 175, 304, 622, 836, 901, 1187
NlaIV GGNNCC 2 cut(s) 271, 352
NmuCI GTSAC 2 cut(s) 550, 653
OliI CACNNNNGTG 1 cut(s) 489
PagI TCATGA 2 cut(s) 832, 1183
PceI AGGCCT 1 cut(s) 36
PctI GAATGC 1 cut(s) 484
PdiI GCCGGC 1 cut(s) 318
PfeI GAWTC 3 cut(s) 233, 497, 1133
PflMI CCANNNNNTGG 1 cut(s) 1028
PkrI GCNGC 5 cut(s) 9, 186, 966, 1027, 1036
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
Ppu21I YACGTR 1 cut(s) 367
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 4 cut(s) 198, 265, 346, 955
PspEI GGTNACC 1 cut(s) 325
PspGI CCWGG 4 cut(s) 198, 265, 346, 955
PspN4I GGNNCC 2 cut(s) 271, 352
PspPI GGNCC 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 2 cut(s) 269, 726
PvuII CAGCTG 1 cut(s) 1028
RsaI GTAC 5 cut(s) 434, 448, 532, 635, 976
RsaNI GTAC 5 cut(s) 433, 447, 531, 634, 975
RseI CAYNNNNRTG 1 cut(s) 489
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 3 cut(s) 213, 504, 1322
SatI GCNGC 5 cut(s) 8, 185, 965, 1026, 1035
Sau3AI GATC 6 cut(s) 121, 189, 269, 726, 760, 916
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 5 cut(s) 117, 200, 267, 348, 957
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 3 cut(s) 1019, 1058, 1193
SfcI CTRYAG 1 cut(s) 57
SgrAI CRCCGGYG 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 3 cut(s) 83, 715, 1208
SmoI CTYRAG 3 cut(s) 83, 715, 1208
Sse9I AATT 6 cut(s) 934, 1126, 1138, 1276, 1287, 1323
SseBI AGGCCT 1 cut(s) 36
SsiI CCGC 5 cut(s) 8, 21, 112, 373, 398
SspMI CTAG 2 cut(s) 156, 1197
SstI GAGCTC 1 cut(s) 72
StuI AGGCCT 1 cut(s) 36
StyD4I CCNGG 5 cut(s) 115, 198, 265, 346, 955
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 2 cut(s) 369, 976
TaqI TCGA 6 cut(s) 192, 231, 311, 627, 1066, 1092
TasI AATT 6 cut(s) 934, 1126, 1138, 1276, 1287, 1323
TatI WGTACW 3 cut(s) 432, 446, 633
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 3 cut(s) 233, 497, 1133
Tru1I TTAA 3 cut(s) 213, 504, 1322
Tru9I TTAA 3 cut(s) 213, 504, 1322
TscAI CASTG 5 cut(s) 245, 384, 571, 882, 1156
TseFI GTSAC 2 cut(s) 550, 653
TseI GCWGC 4 cut(s) 184, 964, 1025, 1034
Tsp45I GTSAC 2 cut(s) 550, 653
TspDTI ATGAA 9 cut(s) 289, 723, 770, 777, 782, 849, 1014, 1172, 1200
TspGWI ACGGA 2 cut(s) 724, 874
TspRI CASTG 5 cut(s) 245, 384, 571, 882, 1156
Van91I CCANNNNNTGG 1 cut(s) 1028
XapI RAATTY 3 cut(s) 934, 1126, 1276
XcmI CCANNNNNNNNNTGG 1 cut(s) 543
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 2 cut(s) 156, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.