Rorug01G0337500

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014363
Physical Location & Seq
Reverse (-)
45566548 .. 45567018
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0337500.1

Sequence Viewer

Length: 471 bp
ATGGTGGAGGGATTGGTAAATGGTAGGTTGAATGGACGTGATGGGTTGAATGTGCATGGGAACAACTTGCATGGGAATAATATGGATGGTTTGCATGGGAATGGGCCAATTATGCAGGAGGGGTTAACCATGCAAACTAGAGATGATAGAAATGGCTGGCAGCTTCAGGAAAGAGGAAAGCTGAAACTAAATTGTGATGGGGAAGCATCAGATAATGCGGGCCATTATGGGGTGGGTTTTATTGTGAGAGATGAAACGGGGGCTATTGTCTTGGCTGCAGGGCAAAGAATTATGCATCCAGTTTCAGCTTTGGTGTCAGAGTTACTGGCCATGAAAATGGGGTTGGAGACGGTGAAGGAAAGAAGGTTAGATGTCGGGGAGGTGGAGACTGATTGTCTTAGTGCAGTGCAGCTTGTTAATCAAAGAGAGAAGTGTTTTGCGGCGGAGGGAATTATAGTGGAGGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

156

Amino Acids

16.95

Weight (kDa)

5.07

Isoelectric Point (pI)

18.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 64 - 145 5.1e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12380 AT3G12380
fragaria_vesca FvH4_7g22790
malus_domestica MD01G1136100.v1.1
prunus_persica Prupe.2G237600_v2.0.a1 Prupe.2G237600_v2.0.a1
pyrus_communis pycom01g15690
rosa_chinensis RchiOBHm_Chr1g0367891
rosa_laevigata RLG00000027259
rosa_multiflora Rmu_ssc0000395.1_g000040
rosa_roxburghii Rroxscaffold_4G00289150
rosa_rugosa Rorug01G0337500
rosa_samantha Rh1AG344400 Rh1BG306400 Rh1CG322000 Rh1DG338600
rosa_wichuraiana Rw1G030660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 218, 440, 443
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 31, 49
AhdI GACNNNNNGTC 1 cut(s) 393
AjiI CACGTC 1 cut(s) 38
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 4 cut(s) 163, 181, 308, 412
AluI AGCT 4 cut(s) 163, 181, 308, 412
Alw26I GTCTC 2 cut(s) 341, 380
AoxI GGCC 3 cut(s) 104, 220, 327
ApeKI GCWGC 3 cut(s) 160, 275, 409
AspS9I GGNCC 2 cut(s) 104, 220
AsuHPI GGTGA 1 cut(s) 364
BalI TGGCCA 1 cut(s) 329
BbvI GCAGC 3 cut(s) 172, 262, 421
BccI CCATC 3 cut(s) 35, 80, 191
BcoDI GTCTC 2 cut(s) 341, 380
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 4 cut(s) 161, 276, 410, 441
BlsI GCNGC 4 cut(s) 162, 277, 411, 442
BmeRI GACNNNNNGTC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 104, 220
BmsI GCATC 2 cut(s) 215, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 299, 330
BseGI GGATG 2 cut(s) 91, 295
BseLI CCNNNNNNNGG 1 cut(s) 229
BseNI ACTGG 2 cut(s) 299, 330
BseXI GCAGC 3 cut(s) 172, 262, 421
BsgI GTGCAG 2 cut(s) 423, 428
BshFI GGCC 3 cut(s) 106, 222, 329
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 341, 380
BsmBI CGTCTC 1 cut(s) 341
BsnI GGCC 3 cut(s) 106, 222, 329
BspACI CCGC 3 cut(s) 218, 440, 443
BspANI GGCC 3 cut(s) 106, 222, 329
BspMAI CTGCAG 1 cut(s) 280
BsrI ACTGG 2 cut(s) 299, 330
Bst4CI ACNGT 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 158, 220
BstDEI CTNAG 1 cut(s) 398
BstF5I GGATG 2 cut(s) 91, 295
BstMAI GTCTC 2 cut(s) 341, 380
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 3 cut(s) 172, 262, 421
BstXI CCANNNNNNTGG 1 cut(s) 337
BsuRI GGCC 3 cut(s) 106, 222, 329
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 91, 295
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 2 cut(s) 158, 220
Cfr13I GGNCC 2 cut(s) 104, 220
CviAII CATG 5 cut(s) 56, 71, 95, 130, 331
DdeI CTNAG 1 cut(s) 398
DriI GACNNNNNGTC 1 cut(s) 393
EaeI YGGCCR 1 cut(s) 327
Eam1105I GACNNNNNGTC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 458
Eco57I CTGAAG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 5 cut(s) 59, 74, 98, 133, 334
FatI CATG 5 cut(s) 55, 70, 94, 129, 330
FauI CCCGC 1 cut(s) 211
Fnu4HI GCNGC 4 cut(s) 161, 276, 410, 441
FokI GGATG 2 cut(s) 98, 282
Fsp4HI GCNGC 4 cut(s) 161, 276, 410, 441
FspBI CTAG 1 cut(s) 138
GluI GCNGC 4 cut(s) 161, 276, 410, 441
HaeIII GGCC 3 cut(s) 106, 222, 329
Hin1II CATG 5 cut(s) 59, 74, 98, 133, 334
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HpaI GTTAAC 1 cut(s) 126
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 211, 319
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 349, 357
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 9 cut(s) 55, 70, 94, 115, 133, 278, 295, 404, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 398
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 5 cut(s) 59, 74, 98, 133, 334
KspAI GTTAAC 1 cut(s) 126
LpnPI CCDG 6 cut(s) 101, 142, 152, 264, 311, 312
Lsp1109I GCAGC 3 cut(s) 172, 262, 421
LweI GCATC 2 cut(s) 215, 304
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 321
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 4 cut(s) 108, 190, 288, 450
MluNI TGGCCA 1 cut(s) 329
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 5 cut(s) 112, 167, 373, 439, 454
Mox20I TGGCCA 1 cut(s) 329
Mph1103I ATGCAT 1 cut(s) 297
MscI TGGCCA 1 cut(s) 329
MseI TTAA 2 cut(s) 125, 417
MslI CAYNNNNRTG 2 cut(s) 99, 335
Msp20I TGGCCA 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 112
NlaIII CATG 5 cut(s) 59, 74, 98, 133, 334
NsiI ATGCAT 1 cut(s) 297
PkrI GCNGC 4 cut(s) 162, 277, 411, 442
PspPI GGNCC 2 cut(s) 104, 220
PstI CTGCAG 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 99, 335
SaqAI TTAA 2 cut(s) 125, 417
SatI GCNGC 4 cut(s) 161, 276, 410, 441
Sau96I GGNCC 2 cut(s) 104, 220
SetI ASST 8 cut(s) 29, 40, 165, 183, 310, 368, 384, 414
SfaNI GCATC 2 cut(s) 215, 304
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 2 cut(s) 99, 335
Sse9I AATT 4 cut(s) 108, 190, 288, 450
SsiI CCGC 3 cut(s) 218, 440, 443
SspMI CTAG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 40
TasI AATT 4 cut(s) 108, 190, 288, 450
TauI GCSGC 1 cut(s) 443
Tru1I TTAA 2 cut(s) 125, 417
Tru9I TTAA 2 cut(s) 125, 417
TscAI CASTG 1 cut(s) 411
TseI GCWGC 3 cut(s) 160, 275, 409
TspDTI ATGAA 2 cut(s) 267, 347
TspRI CASTG 1 cut(s) 411
XspI CTAG 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.