Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007412

Physical Location & Seq

Genomic Coordinates Forward (+)

50101631 .. 50105248

Gene Structure 3618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0390100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGATAAGAGTTGGATTGATGTACAACAAACGGACTGGCATAGATATGAAGATGGAGTTGATAGATTTTTGGATTTCGCATTCGCCAATAGCATCGATAAGACAAGGATTTATTGTCCTTGTAAGCTATGTCGCAATCGCTATTTTAAGACTAGGGAGGAAGCGAGCGAGGATATAAAGGTAGATGGATTTTGGGAAAAATATAGAATATGGGATAAACATGGTGAATCTAGGCCTGCGACTGTATACCAAGGTACTGGGGTTAACTCTAATGTGGCCATCAATGATGATATGTTTGGCATGATTAATGAGGCAATTGGGGCTCCCACCGCCAATTCTGGTTTAGGTGATGATTGTCCTATAGAAAGTGAAAATGTTGAGGGACCAAATGACGAATCTGCAAAATTTCTTAAATTGCTCCAAGATGCAGAGTGTCCTTTATATCCTGGTTGCGAACAATTTACGAAATTGTCATTCATTGTTCGATTGTTACACTTGAAAGTTCTTAGTGGATGGACAAACAAGTCTTTTGATTTACTACTGGATCTTTTAAAATCTTCTTATCCTGATGGAGTCATGACAGAACGGCGAATTCGTAATAGGGTATTTTCTGACGAAATAATTGCTTTGGCTAGAGGCCCTCATGAAGATGGTTTGAGGTTTAAGGGATATTTTATCAATGGCTTTCGGTTTCGTACCAAAAGTAGAGATAAAAAAAAATCCACTCAAAATTCTGGTATTATGATGGATGCCACTACAGGAGACAACAATCGTCAACCGATTGAGGAAAGGTTCTATGGGGTATTAACTGATGTGATTCAAATCCGCTATACCAATCACTTAAAGTTTGTCTTATTTAAGGGTGATTGGATTAATAATCGAATGGGCCTAAAAAAAGATGAGTTTAAATTCACACTGGTGAATTTTAATCATTTATTATACAAAGACAATGTAATAGAAGATGAGCCTTTTATTTTGGCAGAACAGGCAAGGCAGGTTTGTTATGTGCAAGACCCGTCGGATCCCAATTGGCATGTTGTTCTTCACATGACAGTTAGAGATTTGTTTGATATGTACTCAAAGGATTCTTCTCGTCGTCCAACAGTAGTGCCTCAAGTTGAGTTGTATGCCCGTCAACAATTGGATGAAACTATATATCAGAATGATGAGGAGGTTAATTGGGTGAGGGAAGGAGTGGATGGAACAGAAGTGGATACAAATGACAATGACTTTGAAGTTGAAATGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

417

Amino Acids

48.61

Weight (kDa)

4.99

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	3 - 76	1.3e-18	Transposase-associated domain
DUF4216	PF13952	273 - 347	6.5e-21	Domain of unknown function (DUF4216)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51710 AT5G51710
fragaria_vesca	FvH4_7g28310 FvH4_7g28310 FvH4_7g28310 FvH4_7g28310 FvH4_7g28310 FvH4_7g28310
malus_domestica	MD01G1187400.v1.1 MD07G1259700.v1.1
prunus_persica	Prupe.2G283800_v2.0.a1 Prupe.2G283800_v2.0.a1 Prupe.2G283800_v2.0.a1 Prupe.2G283800_v2.0.a1
pyrus_communis	pycom01g19930 pycom07g23310
rosa_chinensis	RchiOBHm_Chr1g0375281
rosa_multiflora	Rmu_sc0000554.1_g000036
rosa_roxburghii	Rroxscaffold_4G00282870
rosa_rugosa	Rorug01G0390000 Rorug01G0390000 Rorug01G0390100
rosa_samantha	Rh1CG377100 Rh1DG394500
rosa_wichuraiana	Rw1G035560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	985
AccI	GTMKAC	1 cut(s)	246
AciI	CCGC	2 cut(s)	330, 826
AclWI	GGATC	3 cut(s)	552, 1016, 1029
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	5 cut(s)	404, 591, 730, 908, 922
AfaI	GTAC	4 cut(s)	24, 256, 697, 1076
AgsI	TTSAA	4 cut(s)	499, 821, 1235, 1241
AjnI	CCWGG	1 cut(s)	445
AleI	CACNNNNGTG	1 cut(s)	917
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	756
AlwI	GGATC	3 cut(s)	552, 1016, 1029
AoxI	GGCC	4 cut(s)	233, 276, 637, 886
ApoI	RAATTY	5 cut(s)	404, 591, 730, 908, 922
ArsI	GACNNNNNNTTYG	2 cut(s)	1214, 1246
AseI	ATTAAT	2 cut(s)	306, 873
AspS9I	GGNCC	3 cut(s)	383, 638, 886
AsuHPI	GGTGA	5 cut(s)	236, 359, 875, 931, 1195
AvaII	GGWCC	1 cut(s)	383
BaeI	ACNNNNGTAYC	2 cut(s)	246, 279
BalI	TGGCCA	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	1021
BanII	GRGCYC	1 cut(s)	325
BccI	CCATC	8 cut(s)	47, 179, 287, 507, 563, 644, 739, 1193
BceAI	ACGGC	1 cut(s)	602
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	1207
BcoDI	GTCTC	1 cut(s)	756
BfaI	CTAG	3 cut(s)	153, 231, 633
BfmI	CTRYAG	2 cut(s)	360, 756
BfuAI	ACCTGC	1 cut(s)	985
BfuI	GTATCC	1 cut(s)	1207
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	3 cut(s)	383, 638, 886
BmiI	GGNNCC	3 cut(s)	324, 384, 1023
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	3 cut(s)	102, 415, 739
BmuI	ACTGGG	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	1098
Bsa29I	ATCGAT	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	821
BsaJI	CCNNGG	1 cut(s)	250
Bse1I	ACTGG	4 cut(s)	41, 262, 546, 921
Bse8I	GATNNNNATC	1 cut(s)	821
BseBI	CCWGG	1 cut(s)	447
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	4 cut(s)	518, 754, 1150, 1204
BseJI	GATNNNNATC	1 cut(s)	821
BseNI	ACTGG	4 cut(s)	41, 262, 546, 921
BseRI	GAGGAG	1 cut(s)	1184
BshFI	GGCC	4 cut(s)	235, 278, 639, 888
BshVI	ATCGAT	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	756
BsmFI	GGGAC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	4 cut(s)	235, 278, 639, 888
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	544, 1021
BspACI	CCGC	2 cut(s)	330, 826
BspANI	GGCC	4 cut(s)	235, 278, 639, 888
BspDI	ATCGAT	1 cut(s)	96
BspHI	TCATGA	2 cut(s)	576, 643
BspLI	GGNNCC	3 cut(s)	324, 384, 1023
BspMI	ACCTGC	1 cut(s)	985
BspPI	GGATC	3 cut(s)	552, 1016, 1029
BsrGI	TGTACA	1 cut(s)	22
BsrI	ACTGG	4 cut(s)	41, 262, 546, 921
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	544, 1021
BssNAI	GTATAC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	250
Bst1107I	GTATAC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	3 cut(s)	244, 1054, 1105
BstAUI	TGTACA	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	166, 237
BstDEI	CTNAG	1 cut(s)	506
BstF5I	GGATG	4 cut(s)	518, 754, 1150, 1204
BstKTI	GATC	2 cut(s)	547, 1024
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	2 cut(s)	544, 1021
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 329, 986
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	1037
BstSCI	CCNGG	1 cut(s)	445
BstSFI	CTRYAG	2 cut(s)	360, 756
BstX2I	RGATCY	2 cut(s)	544, 1021
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	2 cut(s)	544, 1021
BstZ17I	GTATAC	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	1207
BsuRI	GGCC	4 cut(s)	235, 278, 639, 888
BsuTUI	ATCGAT	1 cut(s)	96
BtsCI	GGATG	4 cut(s)	518, 754, 1150, 1204
BtsIMutI	CAGTG	1 cut(s)	914
BveI	ACCTGC	1 cut(s)	985
Cac8I	GCNNGC	2 cut(s)	166, 237
CciI	TCATGA	2 cut(s)	576, 643
Cfr13I	GGNCC	3 cut(s)	383, 638, 886
ClaI	ATCGAT	1 cut(s)	96
Csp6I	GTAC	4 cut(s)	23, 255, 696, 1075
CviAII	CATG	6 cut(s)	221, 301, 577, 644, 1034, 1048
CviJI	RGCY	9 cut(s)	127, 235, 278, 323, 632, 639, 684, 888, 967
CviKI_1	RGCY	9 cut(s)	127, 235, 278, 323, 632, 639, 684, 888, 967
CviQI	GTAC	4 cut(s)	23, 255, 696, 1075
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	2 cut(s)	546, 1023
DpnII	GATC	2 cut(s)	544, 1021
DraI	TTTAAA	2 cut(s)	552, 907
DrdI	GACNNNNNNGTC	1 cut(s)	523
DseDI	GACNNNNNNGTC	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	6 cut(s)	224, 304, 580, 647, 1037, 1051
FalI	AAGNNNNNCTT	2 cut(s)	836, 868
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	6 cut(s)	220, 300, 576, 643, 1033, 1047
FblI	GTMKAC	1 cut(s)	246
FokI	GGATG	4 cut(s)	525, 761, 1157, 1211
FriOI	GRGCYC	1 cut(s)	325
FspBI	CTAG	3 cut(s)	153, 231, 633
HaeIII	GGCC	4 cut(s)	235, 278, 639, 888
Hin1II	CATG	6 cut(s)	224, 304, 580, 647, 1037, 1051
HincII	GTYRAC	3 cut(s)	265, 776, 1136
HindII	GTYRAC	3 cut(s)	265, 776, 1136
HinfI	GANTC	5 cut(s)	227, 395, 573, 817, 1085
HpaI	GTTAAC	1 cut(s)	265
HphI	GGTGA	5 cut(s)	236, 359, 875, 931, 1195
Hpy166II	GTNNAC	4 cut(s)	247, 265, 776, 1136
Hpy188I	TCNGA	3 cut(s)	613, 1021, 1161
Hpy188III	TCNNGA	3 cut(s)	566, 577, 644
Hpy8I	GTNNAC	4 cut(s)	247, 265, 776, 1136
Hpy99I	CGWCG	2 cut(s)	1021, 1098
HpyAV	CCTTC	1 cut(s)	1184
HpyCH4III	ACNGT	3 cut(s)	244, 1054, 1105
HpyCH4V	TGCA	3 cut(s)	401, 428, 1009
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 329, 986
HpyF3I	CTNAG	1 cut(s)	506
Hsp92II	CATG	6 cut(s)	224, 304, 580, 647, 1037, 1051
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	544, 1021
LmnI	GCTCC	2 cut(s)	328, 423
LweI	GCATC	3 cut(s)	102, 415, 739
MaeI	CTAG	3 cut(s)	153, 231, 633
MaeIII	GTNAC	1 cut(s)	489
MalI	GATC	2 cut(s)	546, 1023
MboI	GATC	2 cut(s)	544, 1021
MboII	GAAGA	6 cut(s)	62, 549, 659, 971, 1034, 1080
MfeI	CAATTG	3 cut(s)	315, 1027, 1139
MflI	RGATCY	2 cut(s)	544, 1021
MhlI	GDGCHC	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	278
MluNI	TGGCCA	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	582
MmeI	TCCRAC	2 cut(s)	999, 1124
Mox20I	TGGCCA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	278
MslI	CAYNNNNRTG	3 cut(s)	45, 648, 917
Msp20I	TGGCCA	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	3 cut(s)	315, 1027, 1139
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	320, 329, 986
NdeII	GATC	2 cut(s)	544, 1021
NlaIII	CATG	6 cut(s)	224, 304, 580, 647, 1037, 1051
NlaIV	GGNNCC	3 cut(s)	324, 384, 1023
NspI	RCATGY	1 cut(s)	1037
OliI	CACNNNNGTG	1 cut(s)	917
PagI	TCATGA	2 cut(s)	576, 643
PceI	AGGCCT	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	592
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	4 cut(s)	227, 395, 817, 1085
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
PshBI	ATTAAT	2 cut(s)	306, 873
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	3 cut(s)	324, 384, 1023
PspPI	GGNCC	3 cut(s)	383, 638, 886
PsuI	RGATCY	2 cut(s)	544, 1021
RsaI	GTAC	4 cut(s)	24, 256, 697, 1076
RsaNI	GTAC	4 cut(s)	23, 255, 696, 1075
RseI	CAYNNNNRTG	3 cut(s)	45, 648, 917
Sau3AI	GATC	2 cut(s)	544, 1021
Sau96I	GGNCC	3 cut(s)	383, 638, 886
SchI	GAGTC	1 cut(s)	582
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	8 cut(s)	129, 183, 256, 349, 662, 794, 999, 1176
SfaNI	GCATC	3 cut(s)	102, 415, 739
SfcI	CTRYAG	2 cut(s)	360, 756
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	3 cut(s)	45, 648, 917
SmlI	CTYRAG	1 cut(s)	1113
SmoI	CTYRAG	1 cut(s)	1113
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	2 cut(s)	330, 826
SspMI	CTAG	3 cut(s)	153, 231, 633
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	3 cut(s)	244, 1054, 1105
TaqI	TCGA	3 cut(s)	96, 484, 880
TatI	WGTACW	2 cut(s)	22, 1074
TfiI	GAWTC	4 cut(s)	227, 395, 817, 1085
TscAI	CASTG	1 cut(s)	921
TspDTI	ATGAA	4 cut(s)	63, 466, 660, 1161
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	921
VpaK11BI	GGWCC	1 cut(s)	383
VspI	ATTAAT	2 cut(s)	306, 873
XapI	RAATTY	5 cut(s)	404, 591, 730, 908, 922
XceI	RCATGY	1 cut(s)	1037
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	3 cut(s)	153, 231, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.