Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

50095053 .. 50097932

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0390000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGAAGGTTGTTTGTGCTGAGTCTTGAGGGGAAGATCTATAGCTGCAAGCACTGCCGGACCCATCTTGCTCTTTGTGAAGACATAGTTTCCAAGTCTTTCCAGTCCAGGCATGGGAAGGCTTATCTCTTCAGTAAGGTAGTGAATGTAACTTGTGGAGAGACTGAAGAGAGATTGATGATGACCGGGATGCACACTGTTGCCGACATTTTCTGTGTTGGATGTGGATCAATAGTGGGGTGGAAATATGAGACTGCTCATGAAAAGGGCCAGAAGTACAAGGAAGGCAAATCCGTCCTTGAGCGGGTGAAGATATCGGGTCCTGAAGGAAACAATTATTGGGTCAGTCATGGAGCGCATATCGGTGGCAGCGATGCAGATGACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

129

Amino Acids

14.24

Weight (kDa)

7.66

Isoelectric Point (pI)

16.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yippee-Mis18	PF03226	13 - 106	2.1e-14	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	304
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	235
AcuI	CTGAAG	3 cut(s)	115, 186, 345
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	114, 304
AjnI	CCWGG	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	322, 354
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	155, 245
AlwI	GGATC	1 cut(s)	235
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	45, 369
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	3 cut(s)	60, 268, 320
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	2 cut(s)	60, 320
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	32, 381
BccI	CCATC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	155, 245
BfmI	CTRYAG	1 cut(s)	40
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	2 cut(s)	46, 370
BlsI	GCNGC	2 cut(s)	47, 371
Bme1390I	CCNGG	2 cut(s)	109, 187
Bme18I	GGWCC	2 cut(s)	60, 320
BmgT120I	GGNCC	3 cut(s)	60, 268, 320
BmiI	GGNNCC	2 cut(s)	62, 321
BmrFI	CCNGG	2 cut(s)	109, 187
BmsI	GCATC	2 cut(s)	180, 364
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	2 cut(s)	47, 320
BpuMI	CCSGG	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 304
Bse1I	ACTGG	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	195, 227
BseJI	GATNNNNATC	1 cut(s)	226
BseLI	CCNNNNNNNGG	2 cut(s)	114, 304
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	32, 381
BshFI	GGCC	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	58, 186
BslI	CCNNNNNNNGG	2 cut(s)	114, 304
BsmAI	GTCTC	2 cut(s)	155, 245
BsnI	GGCC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	36, 227
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	62, 321
BspPI	GGATC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	36, 227
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	134, 162
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	195, 227
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	2 cut(s)	39, 230
BstMAI	GTCTC	2 cut(s)	155, 245
BstMBI	GATC	2 cut(s)	36, 227
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 383
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	107, 185
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	32, 381
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	195, 227
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 195
Cac8I	GCNNGC	1 cut(s)	50
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	60, 268, 320
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	3 cut(s)	113, 260, 350
CviJI	RGCY	3 cut(s)	45, 122, 270
CviKI_1	RGCY	3 cut(s)	45, 122, 270
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	2 cut(s)	38, 229
DpnII	GATC	2 cut(s)	36, 227
Eam1104I	CTCTTC	2 cut(s)	134, 162
EarI	CTCTTC	2 cut(s)	134, 162
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	60, 320
Eco57I	CTGAAG	3 cut(s)	115, 186, 345
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	107
EcoRV	GATATC	1 cut(s)	315
FaeI	CATG	3 cut(s)	116, 263, 353
FaiI	YATR	7 cut(s)	42, 86, 114, 249, 261, 351, 360
FatI	CATG	3 cut(s)	112, 259, 349
FauI	CCCGC	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	46, 370
FokI	GGATG	2 cut(s)	202, 234
Fsp4HI	GCNGC	2 cut(s)	46, 370
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	2 cut(s)	46, 370
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	2 cut(s)	58, 186
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	3 cut(s)	116, 263, 353
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	2 cut(s)	58, 186
HphI	GGTGA	1 cut(s)	319
Hpy188III	TCNNGA	3 cut(s)	26, 260, 323
HpyAV	CCTTC	3 cut(s)	112, 278, 320
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	48, 193, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 383
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	116, 263, 353
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	2 cut(s)	36, 227
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	7 cut(s)	71, 94, 116, 121, 199, 284, 336
Lsp1109I	GCAGC	2 cut(s)	32, 381
LweI	GCATC	2 cut(s)	180, 364
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	38, 229
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	2 cut(s)	36, 227
MboII	GAAGA	5 cut(s)	46, 92, 121, 179, 322
MflI	RGATCY	1 cut(s)	36
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	1 cut(s)	22
MseI	TTAA	1 cut(s)	388
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	58, 186
MspR9I	CCNGG	2 cut(s)	109, 187
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	54, 383
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	2 cut(s)	36, 227
NlaIII	CATG	3 cut(s)	116, 263, 353
NlaIV	GGNNCC	2 cut(s)	62, 321
PagI	TCATGA	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	47, 371
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	62, 321
PspPI	GGNCC	3 cut(s)	60, 268, 320
PspPPI	RGGWCCY	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	2 cut(s)	46, 370
Sau3AI	GATC	2 cut(s)	36, 227
Sau96I	GGNCC	3 cut(s)	60, 268, 320
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	109, 187
SetI	ASST	3 cut(s)	11, 47, 141
SfaNI	GCATC	2 cut(s)	180, 364
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	2 cut(s)	60, 320
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	2 cut(s)	26, 299
SmoI	CTYRAG	2 cut(s)	26, 299
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	107, 185
TaaI	ACNGT	1 cut(s)	199
TasI	AATT	1 cut(s)	334
TatI	WGTACW	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TscAI	CASTG	2 cut(s)	59, 202
TseI	GCWGC	2 cut(s)	45, 369
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	2 cut(s)	59, 202
VpaK11BI	GGWCC	2 cut(s)	60, 320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.