Rmu_sc0036835.1_g000001
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036835.1
OG0000383
Physical Location & Seq
Forward (+)
1 .. 671
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036835.1_g000001.1.cds

Sequence Viewer

Length: 346 bp
attaagcaaaataggtttcctactcatcttctgctactacttcttcctcctctccctcactctcgcagcctgcgtcgtcggttcgtcgctcgctaattcaaccacccccgccgcctccgccgcctccgcaatggcggccatggagagcttgatcggcctcatcaatcggattcagagagcatgcacggtcctcggcgaccacggcggtggcgacgccggttcttctttgcctactctctgggaggagcttccctccgtcgccgtcgtcggaggtcagagttccggcaagtcgtcggtgttggagagcattgtcggccgcgattttcttccgagaggatcaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

114

Amino Acids

11.58

Weight (kDa)

5.64

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 319
AciI CCGC 8 cut(s) 109, 112, 118, 121, 127, 135, 205, 317
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 2 cut(s) 136, 314
AcyI GRCGYC 1 cut(s) 214
AgsI TTSAA 1 cut(s) 100
AleI CACNNNNGTG 1 cut(s) 205
AluBI AGCT 2 cut(s) 148, 248
AluI AGCT 2 cut(s) 148, 248
AlwI GGATC 1 cut(s) 344
AoxI GGCC 3 cut(s) 136, 155, 314
ApeKI GCWGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 78
BceAI ACGGC 2 cut(s) 218, 246
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BisI GCNGC 5 cut(s) 67, 112, 121, 136, 317
BlsI GCNGC 5 cut(s) 68, 113, 122, 137, 318
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 237, 269
BsaHI GRCGYC 1 cut(s) 214
BsaJI CCNNGG 3 cut(s) 139, 191, 200
Bse118I RCCGGY 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 139, 191, 200
BseMI GCAATG 1 cut(s) 136
BseRI GAGGAG 2 cut(s) 39, 258
BseX3I CGGCCG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 317
BshFI GGCC 3 cut(s) 138, 157, 316
BsiEI CGRYCG 1 cut(s) 317
BsiSI CCGG 2 cut(s) 217, 283
BsnI GGCC 3 cut(s) 138, 157, 316
Bsp143I GATC 2 cut(s) 151, 336
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 8 cut(s) 109, 112, 118, 121, 127, 135, 205, 317
BspANI GGCC 3 cut(s) 138, 157, 316
BspFNI CGCG 1 cut(s) 319
BspPI GGATC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 3 cut(s) 139, 191, 200
BssMI GATC 2 cut(s) 151, 336
BssNI GRCGYC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 214
BstC8I GCNNGC 3 cut(s) 71, 91, 182
BstDSI CCRYGG 2 cut(s) 139, 200
BstFNI CGCG 1 cut(s) 319
BstKTI GATC 2 cut(s) 154, 339
BstMBI GATC 2 cut(s) 151, 336
BstMCI CGRYCG 1 cut(s) 317
BstMWI GCNNNNNNNGC 7 cut(s) 117, 120, 126, 135, 154, 202, 313
BstNSI RCATGY 1 cut(s) 184
BstUI CGCG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 207
BstZI CGGCCG 1 cut(s) 314
BsuRI GGCC 3 cut(s) 138, 157, 316
BtgI CCRYGG 2 cut(s) 139, 200
Cac8I GCNNGC 3 cut(s) 71, 91, 182
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 188
CseI GACGC 2 cut(s) 62, 222
CviAII CATG 2 cut(s) 140, 181
CviJI RGCY 6 cut(s) 69, 138, 148, 157, 248, 316
CviKI_1 RGCY 6 cut(s) 69, 138, 148, 157, 248, 316
DpnI GATC 2 cut(s) 153, 338
DpnII GATC 2 cut(s) 151, 336
EaeI YGGCCR 2 cut(s) 136, 314
EagI CGGCCG 1 cut(s) 314
EciI GGCGGA 1 cut(s) 107
EclXI CGGCCG 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 188
Eco52I CGGCCG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 143, 184
FaiI YATR 2 cut(s) 141, 182
FatI CATG 2 cut(s) 139, 180
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 5 cut(s) 67, 112, 121, 136, 317
Fsp4HI GCNGC 5 cut(s) 67, 112, 121, 136, 317
GluI GCNGC 5 cut(s) 67, 112, 121, 136, 317
HaeIII GGCC 3 cut(s) 138, 157, 316
HapII CCGG 2 cut(s) 217, 283
HgaI GACGC 2 cut(s) 62, 222
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 2 cut(s) 143, 184
HinfI GANTC 1 cut(s) 170
HpaII CCGG 2 cut(s) 217, 283
Hpy188I TCNGA 5 cut(s) 169, 175, 270, 277, 331
Hpy99I CGWCG 8 cut(s) 78, 81, 89, 216, 261, 267, 270, 296
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 7 cut(s) 117, 120, 126, 135, 154, 202, 313
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 2 cut(s) 143, 184
Kzo9I GATC 2 cut(s) 151, 336
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 5 cut(s) 83, 224, 230, 296, 325
Lsp1109I GCAGC 1 cut(s) 78
MalI GATC 2 cut(s) 153, 338
MboI GATC 2 cut(s) 151, 336
MboII GAAGA 4 cut(s) 20, 35, 214, 318
MluCI AATT 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 248, 280
MseI TTAA 1 cut(s) 3
MslI CAYNNNNRTG 1 cut(s) 205
MspI CCGG 2 cut(s) 217, 283
MvnI CGCG 1 cut(s) 319
MwoI GCNNNNNNNGC 7 cut(s) 117, 120, 126, 135, 154, 202, 313
NcoI CCATGG 1 cut(s) 139
NdeII GATC 2 cut(s) 151, 336
NlaIII CATG 2 cut(s) 143, 184
NmeAIII GCCGAG 1 cut(s) 172
NspI RCATGY 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 205
PaeI GCATGC 1 cut(s) 184
PcsI WCGNNNNNNNCGW 2 cut(s) 70, 208
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 5 cut(s) 68, 113, 122, 137, 318
PspPI GGNCC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 205
SaqAI TTAA 1 cut(s) 3
SatI GCNGC 5 cut(s) 67, 112, 121, 136, 317
Sau3AI GATC 2 cut(s) 151, 336
Sau96I GGNCC 1 cut(s) 188
SetI ASST 5 cut(s) 17, 150, 250, 275, 344
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 205
SphI GCATGC 1 cut(s) 184
Sse9I AATT 1 cut(s) 95
SsiI CCGC 8 cut(s) 109, 112, 118, 121, 127, 135, 205, 317
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 188
TasI AATT 1 cut(s) 95
TauI GCSGC 4 cut(s) 114, 123, 138, 319
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 3
Tru9I TTAA 1 cut(s) 3
TseI GCWGC 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 188
XceI RCATGY 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.