Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

4993691 .. 4994444

Gene Structure 754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG028000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCACTCTGGGAAGCTCTCCCTTCCGTTACCGTCGTCGGAGGCCAGAGTTCCAGGAAGTCTTCCGTTTGGGAAAGCATGGTGAGGAGAGGTTTCTTGCCTTGTGGATCTGTTATTGTGGCGAGGAGACCATTAGTGTTGCAGCTTCATCGGATAGTGGATGGGCGATCTGAATATGCAGGGTTTCTTCATGCGCCTAGGAAGAAGTTTACTGATTTTGGTATGTCGACTTTCAATAATAGGTGCATTTTCTCTTGGAATGATGTAGAGTGTGAATTGTGTGAGCTTTATAGGGACAGCAATACATTTCTACAAGCACTTGCCTATGAGGAGTGCATCAAATTACCTTTGAAATTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

120

Amino Acids

13.77

Weight (kDa)

8.93

Isoelectric Point (pI)

64.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	10 - 58	5.4e-09	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	235, 352, 358
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	3 cut(s)	17, 145, 286
AluI	AGCT	3 cut(s)	17, 145, 286
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	94
AvrII	CCTAGG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	143
BlnI	CCTAGG	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	166
BseRI	GAGGAG	3 cut(s)	100, 139, 344
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	107, 167
BspANI	GGCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	2 cut(s)	107, 167
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	110, 170
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	107, 167
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	196
CviAII	CATG	2 cut(s)	79, 191
CviJI	RGCY	4 cut(s)	17, 45, 145, 286
CviKI_1	RGCY	4 cut(s)	17, 45, 145, 286
DpnI	GATC	2 cut(s)	109, 169
DpnII	GATC	2 cut(s)	107, 167
Eco130I	CCWWGG	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	2 cut(s)	82, 194
FaiI	YATR	6 cut(s)	80, 177, 192, 224, 291, 327
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	78, 190
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	82, 194
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	210, 228
Hpy188I	TCNGA	3 cut(s)	41, 153, 172
Hpy8I	GTNNAC	2 cut(s)	210, 228
Hpy99I	CGWCG	2 cut(s)	38, 41
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	142, 179, 246, 336
Hsp92II	CATG	2 cut(s)	82, 194
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	107, 167
LpnPI	CCDG	4 cut(s)	40, 59, 67, 165
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	3, 28
MalI	GATC	2 cut(s)	109, 169
MboI	GATC	2 cut(s)	107, 167
MboII	GAAGA	3 cut(s)	54, 179, 214
MflI	RGATCY	1 cut(s)	107
MluCI	AATT	3 cut(s)	275, 341, 353
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	5 cut(s)	35, 78, 83, 117, 322
MspR9I	CCNGG	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	55
NdeII	GATC	2 cut(s)	107, 167
NlaIII	CATG	2 cut(s)	82, 194
NmuCI	GTSAC	1 cut(s)	3
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	107
SalI	GTCGAC	1 cut(s)	226
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	107, 167
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	6 cut(s)	19, 94, 147, 245, 288, 349
SfaNI	GCATC	1 cut(s)	345
Sse9I	AATT	3 cut(s)	275, 341, 353
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	227
TasI	AATT	3 cut(s)	275, 341, 353
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	137, 179
TspGWI	ACGGA	2 cut(s)	16, 55
XapI	RAATTY	1 cut(s)	353
XmaJI	CCTAGG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	227
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.