Rh4BG127700
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
21437858 .. 21448689
10832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG127700.1

Sequence Viewer

Length: 207 bp
ATGGCCAGATTGGAGAGCTTGATCGGCCTCGTCAACCGAACCCAGCGCGCCTGCACCTCCCTCGGCGATCACGGCGGCGAGGGCATGTCCCTCTGGGAAGCTCTCCCTTCCGTCGCTGTCGTCGGAGGCCAGAGTAGTATAGTTATGTCACTCAGAAAAGTAGTCATGCATGTGAACATGCTGTTGAAACTTGAAAGTCAGTTATGA

Protein Analysis

68

Amino Acids

7.31

Weight (kDa)

8.0

Isoelectric Point (pI)

67.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 48
AciI CCGC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 2 cut(s) 187, 194
AluBI AGCT 2 cut(s) 18, 101
AluI AGCT 2 cut(s) 18, 101
AoxI GGCC 3 cut(s) 3, 25, 127
AspLEI GCGC 2 cut(s) 48, 50
BalI TGGCCA 1 cut(s) 5
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 166
BsePI GCGCGC 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 5, 27, 129
BslFI GGGAC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 3 cut(s) 5, 27, 129
Bsp143I GATC 2 cut(s) 21, 67
BspACI CCGC 1 cut(s) 75
BspANI GGCC 3 cut(s) 5, 27, 129
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 61
BssHII GCGCGC 1 cut(s) 46
BssMI GATC 2 cut(s) 21, 67
BstC8I GCNNGC 2 cut(s) 48, 52
BstDEI CTNAG 1 cut(s) 152
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 2 cut(s) 48, 50
BstKTI GATC 2 cut(s) 24, 70
BstMBI GATC 2 cut(s) 21, 67
BstMWI GCNNNNNNNGC 3 cut(s) 24, 72, 81
BstNSI RCATGY 3 cut(s) 88, 173, 181
BstUI CGCG 1 cut(s) 48
BsuRI GGCC 3 cut(s) 5, 27, 129
Cac8I GCNNGC 2 cut(s) 48, 52
CfoI GCGC 2 cut(s) 48, 50
CviAII CATG 4 cut(s) 85, 166, 170, 178
CviJI RGCY 5 cut(s) 5, 18, 27, 101, 129
CviKI_1 RGCY 5 cut(s) 5, 18, 27, 101, 129
DdeI CTNAG 1 cut(s) 152
DpnI GATC 2 cut(s) 23, 69
DpnII GATC 2 cut(s) 21, 67
EaeI YGGCCR 1 cut(s) 3
EcoT22I ATGCAT 1 cut(s) 171
FaeI CATG 4 cut(s) 88, 169, 173, 181
FaiI YATR 7 cut(s) 86, 140, 146, 167, 171, 179, 205
FaqI GGGAC 1 cut(s) 73
FatI CATG 4 cut(s) 84, 165, 169, 177
Fnu4HI GCNGC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 76
GlaI GCGC 2 cut(s) 47, 49
GluI GCNGC 1 cut(s) 76
GsaI CCCAGC 1 cut(s) 46
HaeIII GGCC 3 cut(s) 5, 27, 129
HhaI GCGC 2 cut(s) 48, 50
Hin1II CATG 4 cut(s) 88, 169, 173, 181
Hin6I GCGC 2 cut(s) 46, 48
HinP1I GCGC 2 cut(s) 46, 48
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 34, 175
Hpy188I TCNGA 2 cut(s) 125, 155
Hpy8I GTNNAC 2 cut(s) 34, 175
Hpy99I CGWCG 2 cut(s) 116, 125
HpyAV CCTTC 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 54, 169
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 72, 81
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 4 cut(s) 88, 169, 173, 181
HspAI GCGC 2 cut(s) 46, 48
Kzo9I GATC 2 cut(s) 21, 67
LpnPI CCDG 5 cut(s) 19, 56, 64, 79, 143
MaeIII GTNAC 1 cut(s) 147
MalI GATC 2 cut(s) 23, 69
MboI GATC 2 cut(s) 21, 67
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 6 cut(s) 38, 67, 71, 73, 101, 119
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 171
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 5
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 24, 72, 81
NdeII GATC 2 cut(s) 21, 67
NlaIII CATG 4 cut(s) 88, 169, 173, 181
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 171
NspI RCATGY 3 cut(s) 88, 173, 181
PauI GCGCGC 1 cut(s) 46
PkrI GCNGC 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 42
PteI GCGCGC 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 170
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 2 cut(s) 21, 67
SetI ASST 3 cut(s) 20, 59, 103
SmiMI CAYNNNNRTG 1 cut(s) 170
SsiI CCGC 1 cut(s) 75
TauI GCSGC 1 cut(s) 78
TseFI GTSAC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 147
TspGWI ACGGA 1 cut(s) 100
XceI RCATGY 3 cut(s) 88, 173, 181
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.