RLG00000010012
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
61742174 .. 61745636
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010012

Sequence Viewer

Length: 765 bp
ATGGAAGATACCACGTCGTTCCGACGAACTGCACGGAGACTAACATCATTCCGACCACTAACACAGAAACCTACGACATCGTTTCGGGCGACCAATACAGAGGTCAATGTCATTCCGGCCACCACGGAGGCCAACGACTTCAGCTCCGCTTTCTCATATTACAATACCCAACCTCTCTGCTTCAAATTCTCTGATGGCAAACAGCTTCTGGCCAGCACAAATCAGGTCGAAAATGAGGCCCAGTCAACTACTGGTTCCCCTTGGGTTGCGGGTAAATCTTACTTGGACGGCTCAAGAGAATGGATGTCAGGCCCGTCTACTCTTCTCTCAGCCCAGTTTCAGGTCCTGAGCAAGACCATGCATATCCTTGGTGGGAGCATCCCGATTATCTTGGAAACAAATACGCTGAGTGGTGACGAGATTCGCATGCCACCCAAGCACCCCTGGAAATTGGAGAGCTTGATCGGCCTCGTTAACCGAATCCAGCTAGCCTGCACCGCTTTCGGCAATCACGGCAGCGAGGGCATGTCGCTCTGGGAAGCTCTCCCTTCCGTTACCGTCGCTGGAGACCAGAGTTTGGGGAGAGGTTTCTTGCCTCGTGGATCTGGTATTGTGGCGAGGAGACCATTAGTGTTGCAGCTTCATTGGATAGTGGATGGGCGATCTGAATATGCAGAGTTTCTTCATGCTCCTAGAAAGAAGATTACTGATTTTGCTTCTGTACGCAAGGAGATCACAGATGAGACTGATCGCATAATTGGGTAA

Protein Analysis

255

Amino Acids

28.08

Weight (kDa)

8.57

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 577
AccI GTMKAC 1 cut(s) 317
AciI CCGC 3 cut(s) 147, 269, 498
AclWI GGATC 1 cut(s) 610
AcoI YGGCCR 2 cut(s) 117, 210
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 124
AfaI GTAC 1 cut(s) 723
AfiI CCNNNNNNNGG 2 cut(s) 340, 577
AgsI TTSAA 1 cut(s) 184
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 6 cut(s) 144, 205, 459, 487, 542, 640
AluI AGCT 6 cut(s) 144, 205, 459, 487, 542, 640
Alw26I GTCTC 4 cut(s) 31, 561, 616, 737
AlwI GGATC 1 cut(s) 610
AlwNI CAGNNNCTG 2 cut(s) 208, 346
AoxI GGCC 6 cut(s) 117, 129, 210, 237, 310, 466
ApeKI GCWGC 2 cut(s) 516, 637
ApoI RAATTY 1 cut(s) 185
AspS9I GGNCC 3 cut(s) 238, 311, 343
AsuHPI GGTGA 1 cut(s) 425
AsuNHI GCTAGC 1 cut(s) 487
AvaII GGWCC 1 cut(s) 343
BalI TGGCCA 1 cut(s) 212
BauI CACGAG 1 cut(s) 597
BbvI GCAGC 2 cut(s) 528, 649
BccI CCATC 2 cut(s) 188, 650
BceAI ACGGC 2 cut(s) 304, 529
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciT130I CCWGG 1 cut(s) 445
BcoDI GTCTC 4 cut(s) 31, 561, 616, 737
BfaI CTAG 2 cut(s) 488, 693
BisI GCNGC 2 cut(s) 517, 638
BlsI GCNGC 2 cut(s) 518, 639
Bme1390I CCNGG 1 cut(s) 445
Bme18I GGWCC 1 cut(s) 343
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 3 cut(s) 238, 311, 343
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 445
BmrI ACTGGG 2 cut(s) 235, 328
BmsI GCATC 1 cut(s) 387
BmtI GCTAGC 1 cut(s) 491
BmuI ACTGGG 2 cut(s) 235, 328
BpmI CTGGAG 1 cut(s) 585
Bpu10I CCTNAGC 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 277
BsaI GGTCTC 2 cut(s) 561, 616
BsaJI CCNNGG 4 cut(s) 123, 260, 367, 443
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 577
Bse1I ACTGG 3 cut(s) 241, 256, 334
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 4 cut(s) 123, 260, 367, 443
BseGI GGATG 3 cut(s) 309, 378, 661
BseLI CCNNNNNNNGG 2 cut(s) 340, 577
BseMII CTCAG 3 cut(s) 338, 342, 398
BseNI ACTGG 3 cut(s) 241, 256, 334
BseRI GAGGAG 1 cut(s) 634
BseXI GCAGC 2 cut(s) 528, 649
BsgI GTGCAG 2 cut(s) 15, 478
BshFI GGCC 6 cut(s) 119, 131, 212, 239, 312, 468
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 340, 577
BsmAI GTCTC 4 cut(s) 31, 561, 616, 737
BsnI GGCC 6 cut(s) 119, 131, 212, 239, 312, 468
Bso31I GGTCTC 2 cut(s) 561, 616
Bsp143I GATC 5 cut(s) 462, 602, 662, 732, 748
BspACI CCGC 3 cut(s) 147, 269, 498
BspANI GGCC 6 cut(s) 119, 131, 212, 239, 312, 468
BspCNI CTCAG 3 cut(s) 339, 341, 399
BspLI GGNNCC 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 491
BspPI GGATC 1 cut(s) 610
BspTNI GGTCTC 2 cut(s) 561, 616
BsrI ACTGG 3 cut(s) 241, 256, 334
BssECI CCNNGG 4 cut(s) 123, 260, 367, 443
BssMI GATC 5 cut(s) 462, 602, 662, 732, 748
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 2 cut(s) 260, 367
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 327
BstC8I GCNNGC 4 cut(s) 214, 428, 489, 493
BstDEI CTNAG 3 cut(s) 328, 347, 407
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 309, 378, 661
BstKTI GATC 5 cut(s) 465, 605, 665, 735, 751
BstMAI GTCTC 4 cut(s) 31, 561, 616, 737
BstMBI GATC 5 cut(s) 462, 602, 662, 732, 748
BstMWI GCNNNNNNNGC 5 cut(s) 436, 465, 497, 513, 522
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 2 cut(s) 430, 529
BstSCI CCNGG 1 cut(s) 443
BstV1I GCAGC 2 cut(s) 528, 649
BstX2I RGATCY 1 cut(s) 602
BstYI RGATCY 1 cut(s) 602
BsuRI GGCC 6 cut(s) 119, 131, 212, 239, 312, 468
BtgI CCRYGG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 3 cut(s) 309, 378, 661
Cac8I GCNNGC 4 cut(s) 214, 428, 489, 493
CaiI CAGNNNCTG 2 cut(s) 208, 346
Cfr13I GGNCC 3 cut(s) 238, 311, 343
Csp6I GTAC 1 cut(s) 722
CviAII CATG 4 cut(s) 358, 427, 526, 686
CviQI GTAC 1 cut(s) 722
DdeI CTNAG 3 cut(s) 328, 347, 407
DpnI GATC 5 cut(s) 464, 604, 664, 734, 750
DpnII GATC 5 cut(s) 462, 602, 662, 732, 748
EaeI YGGCCR 2 cut(s) 117, 210
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco130I CCWWGG 2 cut(s) 260, 367
Eco31I GGTCTC 2 cut(s) 561, 616
Eco47I GGWCC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 2 cut(s) 260, 367
EcoT22I ATGCAT 1 cut(s) 363
ErhI CCWWGG 2 cut(s) 260, 367
FaeI CATG 4 cut(s) 361, 430, 529, 689
FaiI YATR 8 cut(s) 157, 359, 363, 428, 527, 672, 687, 755
FatI CATG 4 cut(s) 357, 426, 525, 685
FauI CCCGC 1 cut(s) 262
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 2 cut(s) 517, 638
FokI GGATG 3 cut(s) 316, 365, 668
Fsp4HI GCNGC 2 cut(s) 517, 638
FspBI CTAG 2 cut(s) 488, 693
GluI GCNGC 2 cut(s) 517, 638
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 6 cut(s) 119, 131, 212, 239, 312, 468
HapII CCGG 1 cut(s) 116
Hin1II CATG 4 cut(s) 361, 430, 529, 689
HincII GTYRAC 2 cut(s) 246, 475
HindII GTYRAC 2 cut(s) 246, 475
HinfI GANTC 2 cut(s) 421, 480
HpaI GTTAAC 1 cut(s) 475
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 3 cut(s) 246, 318, 475
Hpy188I TCNGA 4 cut(s) 23, 53, 193, 667
Hpy188III TCNNGA 3 cut(s) 294, 346, 382
Hpy8I GTNNAC 3 cut(s) 246, 318, 475
Hpy99I CGWCG 3 cut(s) 19, 27, 563
HpyAV CCTTC 1 cut(s) 558
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 5 cut(s) 32, 361, 495, 637, 674
HpyF10VI GCNNNNNNNGC 5 cut(s) 436, 465, 497, 513, 522
HpyF3I CTNAG 3 cut(s) 328, 347, 407
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 4 cut(s) 361, 430, 529, 689
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 5 cut(s) 462, 602, 662, 732, 748
LmnI GCTCC 3 cut(s) 149, 375, 694
Lsp1109I GCAGC 2 cut(s) 528, 649
LweI GCATC 1 cut(s) 387
MaeI CTAG 2 cut(s) 488, 693
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 413, 553
MalI GATC 5 cut(s) 464, 604, 664, 734, 750
MboI GATC 5 cut(s) 462, 602, 662, 732, 748
MboII GAAGA 4 cut(s) 17, 314, 674, 712
MflI RGATCY 1 cut(s) 602
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 3 cut(s) 185, 449, 756
MluNI TGGCCA 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 46, 76
MnlI CCTC 9 cut(s) 94, 121, 183, 229, 479, 514, 578, 606, 612
Mox20I TGGCCA 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 363
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 5 cut(s) 436, 465, 497, 513, 522
NdeII GATC 5 cut(s) 462, 602, 662, 732, 748
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 4 cut(s) 361, 430, 529, 689
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 413
NsiI ATGCAT 1 cut(s) 363
NspI RCATGY 2 cut(s) 430, 529
PaeI GCATGC 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 2 cut(s) 421, 480
PflMI CCANNNNNTGG 1 cut(s) 577
PkrI GCNGC 2 cut(s) 518, 639
PpuMI RGGWCCY 1 cut(s) 343
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 3 cut(s) 238, 311, 343
PspPPI RGGWCCY 1 cut(s) 343
PstNI CAGNNNCTG 2 cut(s) 208, 346
PsuI RGATCY 1 cut(s) 602
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 517, 638
Sau3AI GATC 5 cut(s) 462, 602, 662, 732, 748
Sau96I GGNCC 3 cut(s) 238, 311, 343
ScrFI CCNGG 1 cut(s) 445
SfaNI GCATC 1 cut(s) 387
SinI GGWCC 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SphI GCATGC 1 cut(s) 430
Sse9I AATT 3 cut(s) 185, 449, 756
SsiI CCGC 3 cut(s) 147, 269, 498
SspMI CTAG 2 cut(s) 488, 693
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 2 cut(s) 260, 367
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 228
TasI AATT 3 cut(s) 185, 449, 756
TfiI GAWTC 2 cut(s) 421, 480
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 516, 637
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 632, 674
TspGWI ACGGA 3 cut(s) 49, 140, 541
Van91I CCANNNNNTGG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 1 cut(s) 185
XceI RCATGY 2 cut(s) 430, 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 2 cut(s) 488, 693
Zsp2I ATGCAT 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.