Rmu_sc0023009.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023009.1
OG0000383
Physical Location & Seq
Forward (+)
1 .. 460
460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023009.1_g000001.1.cds

Sequence Viewer

Length: 330 bp
gccgcgctcttctgggtctcgggaacctctgagttagcaggctcgagggagtggacggctgggccctcttttgtgagacctgagcagctcattctcccccctcggtcgtccccagaacgcgcacctgagcagcccattctccaacgcgcaaatgatctatacagaacgaggttatgcaagtatgatcgggaagagtgcccagatgcacacaactgtcagtttgcgcactgcgaggaggagatccgccttccaacaaggcagatcaacggcttttgccaatacgggagtcgctgtccgtacggagccagatgtttctaccggtatcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.67

Weight (kDa)

7.78

Isoelectric Point (pI)

62.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 225
AccII CGCG 3 cut(s) 5, 120, 147
AciI CCGC 2 cut(s) 3, 244
AclWI GGATC 1 cut(s) 235
AfaI GTAC 1 cut(s) 299
AgeI ACCGGT 1 cut(s) 318
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 22, 70
AlwI GGATC 1 cut(s) 235
Ama87I CYCGRG 2 cut(s) 19, 43
AoxI GGCC 1 cut(s) 62
ApaI GGGCCC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 85, 130
AsiGI ACCGGT 1 cut(s) 318
AspLEI GCGC 4 cut(s) 7, 122, 149, 226
AspS9I GGNCC 2 cut(s) 62, 63
AvaI CYCGRG 2 cut(s) 19, 43
BaeGI GKGCMC 2 cut(s) 66, 200
BanII GRGCYC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 97, 142
BceAI ACGGC 2 cut(s) 72, 283
BcoDI GTCTC 2 cut(s) 22, 70
BisI GCNGC 3 cut(s) 3, 86, 131
BlsI GCNGC 3 cut(s) 4, 87, 132
BmeT110I CYCGRG 2 cut(s) 19, 43
BmgT120I GGNCC 2 cut(s) 62, 63
BmiI GGNNCC 3 cut(s) 25, 64, 304
BmsI GCATC 1 cut(s) 193
Bpu10I CCTNAGC 2 cut(s) 81, 126
BsaI GGTCTC 2 cut(s) 22, 70
BsaJI CCNNGG 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bse118I RCCGGY 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 101
BseMII CTCAG 3 cut(s) 21, 72, 117
BseRI GAGGAG 2 cut(s) 248, 251
BseSI GKGCMC 2 cut(s) 66, 200
BseXI GCAGC 2 cut(s) 97, 142
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 3 cut(s) 5, 120, 147
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 1 cut(s) 64
BshTI ACCGGT 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 107
BsiHKCI CYCGRG 2 cut(s) 19, 43
BsiSI CCGG 1 cut(s) 319
BsiWI CGTACG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 94
BsmAI GTCTC 2 cut(s) 22, 70
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 64
Bso31I GGTCTC 2 cut(s) 22, 70
BsoBI CYCGRG 2 cut(s) 19, 43
Bsp120I GGGCCC 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 66, 200
Bsp143I GATC 4 cut(s) 154, 184, 240, 261
BspACI CCGC 2 cut(s) 3, 244
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 3 cut(s) 22, 73, 118
BspFNI CGCG 3 cut(s) 5, 120, 147
BspLI GGNNCC 3 cut(s) 25, 64, 304
BspPI GGATC 1 cut(s) 235
BspQI GCTCTTC 1 cut(s) 14
BspTNI GGTCTC 2 cut(s) 22, 70
BsrFI RCCGGY 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 4 cut(s) 154, 184, 240, 261
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 2 cut(s) 14, 186
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 3 cut(s) 30, 81, 126
BstFNI CGCG 3 cut(s) 5, 120, 147
BstHHI GCGC 4 cut(s) 7, 122, 149, 226
BstKTI GATC 4 cut(s) 157, 187, 243, 264
BstMAI GTCTC 2 cut(s) 22, 70
BstMBI GATC 4 cut(s) 154, 184, 240, 261
BstMCI CGRYCG 1 cut(s) 107
BstSLI GKGCMC 2 cut(s) 66, 200
BstUI CGCG 3 cut(s) 5, 120, 147
BstV1I GCAGC 2 cut(s) 97, 142
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BsuRI GGCC 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 40
CfoI GCGC 4 cut(s) 7, 122, 149, 226
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 62, 63
Csp6I GTAC 1 cut(s) 298
CspAI ACCGGT 1 cut(s) 318
CviJI RGCY 7 cut(s) 42, 59, 64, 88, 133, 270, 305
CviKI_1 RGCY 7 cut(s) 42, 59, 64, 88, 133, 270, 305
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 30, 81, 126
DpnI GATC 4 cut(s) 156, 186, 242, 263
DpnII GATC 4 cut(s) 154, 184, 240, 261
Eam1104I CTCTTC 2 cut(s) 14, 186
EarI CTCTTC 2 cut(s) 14, 186
EciI GGCGGA 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 2 cut(s) 22, 70
Eco88I CYCGRG 2 cut(s) 19, 43
EcoO109I RGGNCCY 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 66
FaiI YATR 3 cut(s) 160, 175, 183
FaqI GGGAC 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 3, 86, 131
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 3 cut(s) 3, 86, 131
FspI TGCGCA 1 cut(s) 225
GlaI GCGC 4 cut(s) 6, 121, 148, 225
GluI GCNGC 3 cut(s) 3, 86, 131
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 319
HhaI GCGC 4 cut(s) 7, 122, 149, 226
Hin6I GCGC 4 cut(s) 5, 120, 147, 224
HinP1I GCGC 4 cut(s) 5, 120, 147, 224
HinfI GANTC 1 cut(s) 286
HpaII CCGG 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 21, 188
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 177, 206
HpyF3I CTNAG 3 cut(s) 30, 81, 126
HspAI GCGC 4 cut(s) 5, 120, 147, 224
Kzo9I GATC 4 cut(s) 154, 184, 240, 261
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 7 cut(s) 24, 45, 93, 126, 138, 213, 319
Lsp1109I GCAGC 2 cut(s) 97, 142
LweI GCATC 1 cut(s) 193
MalI GATC 4 cut(s) 156, 186, 242, 263
MboI GATC 4 cut(s) 154, 184, 240, 261
MboII GAAGA 1 cut(s) 203
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 2 cut(s) 66, 200
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 2 cut(s) 166, 275
MnlI CCTC 7 cut(s) 37, 39, 76, 111, 162, 226, 229
MspI CCGG 1 cut(s) 319
MvnI CGCG 3 cut(s) 5, 120, 147
NdeII GATC 4 cut(s) 154, 184, 240, 261
NlaIV GGNNCC 3 cut(s) 25, 64, 304
NsbI TGCGCA 1 cut(s) 225
PaeR7I CTCGAG 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 14
Pfl23II CGTACG 1 cut(s) 297
PinAI ACCGGT 1 cut(s) 318
PkrI GCNGC 3 cut(s) 4, 87, 132
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 59
PspLI CGTACG 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 25, 64, 304
PspOMI GGGCCC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 62, 63
PspXI VCTCGAGB 1 cut(s) 43
PsuI RGATCY 1 cut(s) 240
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 14
SatI GCNGC 3 cut(s) 3, 86, 131
Sau3AI GATC 4 cut(s) 154, 184, 240, 261
Sau96I GGNCC 2 cut(s) 62, 63
SchI GAGTC 1 cut(s) 295
SduI GDGCHC 2 cut(s) 66, 200
SetI ASST 5 cut(s) 29, 82, 90, 127, 173
SfaNI GCATC 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SsiI CCGC 2 cut(s) 3, 244
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 44
TaqII GACCGA 1 cut(s) 93
TauI GCSGC 1 cut(s) 5
TscAI CASTG 1 cut(s) 233
TseI GCWGC 2 cut(s) 85, 130
TspGWI ACGGA 2 cut(s) 285, 315
TspRI CASTG 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.