Rh4AG397500
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
70220947 .. 70223285
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG397500.1

Sequence Viewer

Length: 363 bp
ATGGCGTACCTTGCAGTTGTAAACTTGACTCTCATAGATCTTCCTGGATTGACCAAGTTTTTTGTAGATGCCATTGAACTTGCAAGAGAGGTCGATCCATCAGGCAGAACATTTGGAGTGATAACAAAACTTGATCTAATGGACAAGGGAACCAACGCTTTCAATTCTCCCATCAGGCAGCACATACCAAGGATCATTGCTTTGATTAATAAGACCATTAGTGAATTAAATGTAGAGCCGGATCGCATTGGCAGGCCAATTGGCATAGATTCAGGGGTCCAATTGTACGCTATTTTAGAGCTATGTCGTGCATTTGAAGGTGTATTCAAGGAACACCTGGTTGGAGGATGCACTTTGTTTTGA

Protein Analysis

120

Amino Acids

13.23

Weight (kDa)

5.61

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 89, 200, 249
AfaI GTAC 2 cut(s) 8, 287
AgsI TTSAA 4 cut(s) 77, 163, 317, 328
AjnI CCWGG 2 cut(s) 43, 336
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
AlwI GGATC 3 cut(s) 89, 200, 249
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 178
AseI ATTAAT 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 277
AvaII GGWCC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 106, 179
BciT130I CCWGG 2 cut(s) 45, 338
BglII AGATCT 1 cut(s) 37
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 45, 338
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 151, 278
BmrFI CCNGG 2 cut(s) 45, 338
BmsI GCATC 2 cut(s) 58, 338
BsaJI CCNNGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 2 cut(s) 45, 338
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 239
BsnI GGCC 1 cut(s) 256
Bsp143I GATC 5 cut(s) 37, 94, 133, 192, 241
BspANI GGCC 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 151, 278
BspPI GGATC 3 cut(s) 89, 200, 249
BsrDI GCAATG 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 5 cut(s) 37, 94, 133, 192, 241
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 45, 338
BstC8I GCNNGC 1 cut(s) 254
BstF5I GGATG 1 cut(s) 353
BstKTI GATC 5 cut(s) 40, 97, 136, 195, 244
BstMBI GATC 5 cut(s) 37, 94, 133, 192, 241
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 45, 338
BstSCI CCNGG 2 cut(s) 43, 336
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 256
BtsCI GGATG 1 cut(s) 353
Cac8I GCNNGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 277
CsiI ACCWGGT 1 cut(s) 336
Csp6I GTAC 2 cut(s) 7, 286
CviJI RGCY 3 cut(s) 238, 256, 301
CviKI_1 RGCY 3 cut(s) 238, 256, 301
CviQI GTAC 2 cut(s) 7, 286
DpnI GATC 5 cut(s) 39, 96, 135, 194, 243
DpnII GATC 5 cut(s) 37, 94, 133, 192, 241
Eco130I CCWWGG 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 43, 336
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaiI YATR 4 cut(s) 35, 185, 266, 304
Fnu4HI GCNGC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 256
HapII CCGG 1 cut(s) 239
HinfI GANTC 2 cut(s) 28, 269
HpaII CCGG 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 311
HpyCH4V TGCA 4 cut(s) 14, 83, 311, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Kzo9I GATC 5 cut(s) 37, 94, 133, 192, 241
LpnPI CCDG 9 cut(s) 30, 57, 87, 160, 238, 252, 258, 323, 350
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 58, 338
MabI ACCWGGT 1 cut(s) 336
MalI GATC 5 cut(s) 39, 96, 135, 194, 243
MboI GATC 5 cut(s) 37, 94, 133, 192, 241
MboII GAAGA 1 cut(s) 32
MfeI CAATTG 2 cut(s) 258, 281
MflI RGATCY 1 cut(s) 37
MluCI AATT 4 cut(s) 163, 224, 258, 281
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 2 cut(s) 82, 338
MseI TTAA 2 cut(s) 207, 227
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 45, 338
MunI CAATTG 2 cut(s) 258, 281
MvaI CCWGG 2 cut(s) 45, 338
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 5 cut(s) 37, 94, 133, 192, 241
NlaIV GGNNCC 2 cut(s) 151, 278
PfeI GAWTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 43
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 43, 336
PspGI CCWGG 2 cut(s) 43, 336
PspN4I GGNNCC 2 cut(s) 151, 278
PspPI GGNCC 1 cut(s) 277
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 2 cut(s) 8, 287
RsaNI GTAC 2 cut(s) 7, 286
SaqAI TTAA 2 cut(s) 207, 227
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 5 cut(s) 37, 94, 133, 192, 241
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 45, 338
SetI ASST 5 cut(s) 12, 93, 303, 322, 339
SexAI ACCWGGT 1 cut(s) 336
SfaNI GCATC 2 cut(s) 58, 338
SinI GGWCC 1 cut(s) 277
Sse9I AATT 4 cut(s) 163, 224, 258, 281
StyD4I CCNGG 2 cut(s) 43, 336
StyI CCWWGG 1 cut(s) 188
TaqI TCGA 1 cut(s) 93
TasI AATT 4 cut(s) 163, 224, 258, 281
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 207, 227
Tru9I TTAA 2 cut(s) 207, 227
TseI GCWGC 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 277
VspI ATTAAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.