RLG00000005460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000383
Physical Location & Seq
Reverse (-)
67829148 .. 67829579
432 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005460

Sequence Viewer

Length: 432 bp
ATGTGGCCCGGTGACGAGTCGATGACAGTGACGGAACCTTTCCAGCGGCTTTTGGGCCATCTCGGCTCTGTTCCTCAACAGGTTTTGAGTTTCCAAGCACGGACCCTTTCCGATTTGATTCCCCACAACTCCGCCCGCAATTTCCATCATCATCACGAGCGAATGCACCTTTCGTCGTGCTTAAATGCTGGAGGCATGTGGCTCGTTCCTGTATTTGTTCCTCTTAGTTTCTGCCTCAGCCTCCCCACCTCCGCCTCGAGATTGGAAACCTTAGCAGCTGTCTCCATCGATGTGATCTTCCACGCCAGATCCAACTGCTCGTACGTTCTCTCGGAATCACTGACAAGATCTCGTCCGGCAATTGAAAGTCTCGCCCCCGCCTCCTCCCCTGCAGCCGCCGCCGACGCTTCCACTAGCCTGCAACATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.5

Weight (kDa)

6.48

Isoelectric Point (pI)

65.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 46, 132, 136, 252, 378, 396, 399
AclWI GGATC 1 cut(s) 303
AfaI GTAC 1 cut(s) 323
AgsI TTSAA 1 cut(s) 365
AluBI AGCT 2 cut(s) 278, 429
AluI AGCT 2 cut(s) 278, 429
Alw26I GTCTC 2 cut(s) 286, 374
AlwI GGATC 1 cut(s) 303
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 2 cut(s) 5, 55
ApeKI GCWGC 2 cut(s) 275, 392
AspS9I GGNCC 3 cut(s) 6, 55, 102
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 1 cut(s) 102
BauI CACGAG 1 cut(s) 155
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 287, 404
BccI CCATC 3 cut(s) 66, 153, 293
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 2 cut(s) 286, 374
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 63
BglII AGATCT 1 cut(s) 347
BisI GCNGC 5 cut(s) 47, 276, 393, 396, 399
BlsI GCNGC 5 cut(s) 48, 277, 394, 397, 400
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 3 cut(s) 6, 55, 102
BmiI GGNNCC 2 cut(s) 36, 104
BmrFI CCNGG 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 210
Bpu10I CCTNAGC 2 cut(s) 236, 271
BpuMI CCSGG 1 cut(s) 9
Bsa29I ATCGAT 1 cut(s) 288
BseCI ATCGAT 1 cut(s) 288
BseMII CTCAG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 373
BseXI GCAGC 2 cut(s) 287, 404
BshFI GGCC 2 cut(s) 7, 57
BshVI ATCGAT 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 2 cut(s) 9, 356
BsiWI CGTACG 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 286, 374
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 2 cut(s) 7, 57
BsoBI CYCGRG 1 cut(s) 256
Bsp143I GATC 3 cut(s) 294, 308, 347
BspACI CCGC 7 cut(s) 46, 132, 136, 252, 378, 396, 399
BspANI GGCC 2 cut(s) 7, 57
BspCNI CTCAG 1 cut(s) 249
BspDI ATCGAT 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 36, 104
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 1 cut(s) 303
BssMI GATC 3 cut(s) 294, 308, 347
BssSI CACGAG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 136, 419
BstDEI CTNAG 3 cut(s) 224, 236, 271
BstKTI GATC 3 cut(s) 297, 311, 350
BstMAI GTCTC 2 cut(s) 286, 374
BstMBI GATC 3 cut(s) 294, 308, 347
BstMWI GCNNNNNNNGC 3 cut(s) 63, 398, 404
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 287, 404
BstX2I RGATCY 2 cut(s) 308, 347
BstYI RGATCY 2 cut(s) 308, 347
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 2 cut(s) 7, 57
BsuTUI ATCGAT 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 33, 338
Cac8I GCNNGC 2 cut(s) 136, 419
Cfr13I GGNCC 3 cut(s) 6, 55, 102
ClaI ATCGAT 1 cut(s) 288
CseI GACGC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 322
CviAII CATG 1 cut(s) 196
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 3 cut(s) 224, 236, 271
DpnI GATC 3 cut(s) 296, 310, 349
DpnII GATC 3 cut(s) 294, 308, 347
EciI GGCGGA 2 cut(s) 121, 241
Eco47I GGWCC 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 256
FaeI CATG 1 cut(s) 199
FaiI YATR 2 cut(s) 197, 426
FatI CATG 1 cut(s) 195
FauI CCCGC 2 cut(s) 143, 385
Fnu4HI GCNGC 5 cut(s) 47, 276, 393, 396, 399
Fsp4HI GCNGC 5 cut(s) 47, 276, 393, 396, 399
FspBI CTAG 1 cut(s) 414
GluI GCNGC 5 cut(s) 47, 276, 393, 396, 399
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 7, 57
HapII CCGG 2 cut(s) 9, 356
HgaI GACGC 1 cut(s) 413
Hin1II CATG 1 cut(s) 199
HinfI GANTC 3 cut(s) 17, 118, 335
HpaII CCGG 2 cut(s) 9, 356
HphI GGTGA 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 112, 334
Hpy188III TCNNGA 2 cut(s) 155, 258
Hpy99I CGWCG 2 cut(s) 178, 407
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 3 cut(s) 166, 392, 421
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 398, 404
HpyF3I CTNAG 3 cut(s) 224, 236, 271
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 3 cut(s) 294, 308, 347
LpnPI CCDG 8 cut(s) 22, 56, 65, 174, 222, 319, 369, 402
Lsp1109I GCAGC 2 cut(s) 287, 404
MaeI CTAG 1 cut(s) 414
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 11, 28
MalI GATC 3 cut(s) 296, 310, 349
MboI GATC 3 cut(s) 294, 308, 347
MboII GAAGA 1 cut(s) 289
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 2 cut(s) 308, 347
MluCI AATT 2 cut(s) 139, 360
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 9 cut(s) 84, 185, 231, 245, 251, 259, 265, 391, 394
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 290
MspA1I CMGCKG 2 cut(s) 46, 278
MspI CCGG 2 cut(s) 9, 356
MspR9I CCNGG 1 cut(s) 9
MunI CAATTG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 63, 398, 404
NciI CCSGG 1 cut(s) 9
NdeII GATC 3 cut(s) 294, 308, 347
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 36, 104
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 2 cut(s) 11, 28
NspI RCATGY 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 256
PctI GAATGC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 118, 335
Pfl23II CGTACG 1 cut(s) 321
PkrI GCNGC 5 cut(s) 48, 277, 394, 397, 400
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PspLI CGTACG 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 36, 104
PspPI GGNCC 3 cut(s) 6, 55, 102
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 2 cut(s) 308, 347
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 5 cut(s) 47, 276, 393, 396, 399
Sau3AI GATC 3 cut(s) 294, 308, 347
Sau96I GGNCC 3 cut(s) 6, 55, 102
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 9
SetI ASST 8 cut(s) 40, 84, 171, 251, 272, 280, 327, 431
SfcI CTRYAG 1 cut(s) 390
Sfr274I CTCGAG 1 cut(s) 256
SinI GGWCC 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 2 cut(s) 139, 360
SsiI CCGC 7 cut(s) 46, 132, 136, 252, 378, 396, 399
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 327
TaqI TCGA 3 cut(s) 20, 257, 288
TasI AATT 2 cut(s) 139, 360
TauI GCSGC 3 cut(s) 49, 398, 401
TfiI GAWTC 2 cut(s) 118, 335
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 2 cut(s) 33, 345
TseFI GTSAC 2 cut(s) 11, 28
TseI GCWGC 2 cut(s) 275, 392
Tsp45I GTSAC 2 cut(s) 11, 28
TspGWI ACGGA 2 cut(s) 47, 115
TspRI CASTG 2 cut(s) 33, 345
VpaK11BI GGWCC 1 cut(s) 102
XceI RCATGY 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 256
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.