Rh4BG370500
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
52816950 .. 52819362
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG370500.1

Sequence Viewer

Length: 201 bp
ATGGCCAGATTGGAGAGCTTGATCGGCCTCGTCAACCGAACCCAGCGCGCTTGCACCTCCCTCAGCGATCATGGCGGCGAGGGCATGTCCCTTTGGGAAGCTCTCCCTTCCGTCGCCGTCGTTGGAGGCCAGATTCAAATTTCAATTGAGGTGAGGAAGGAGCTGTTGATCACGGCCATGCTTACAGGATCATTTGGCTAA

Protein Analysis

66

Amino Acids

7.0

Weight (kDa)

5.63

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 48
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 2 cut(s) 3, 174
AcsI RAATTY 1 cut(s) 138
AgsI TTSAA 2 cut(s) 137, 144
AluBI AGCT 3 cut(s) 18, 101, 163
AluI AGCT 3 cut(s) 18, 101, 163
AlwI GGATC 1 cut(s) 196
AoxI GGCC 4 cut(s) 3, 25, 127, 174
ApoI RAATTY 1 cut(s) 138
AspLEI GCGC 2 cut(s) 48, 50
AsuHPI GGTGA 1 cut(s) 163
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 62
BceAI ACGGC 2 cut(s) 101, 189
BclI TGATCA 1 cut(s) 168
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 62
BseMII CTCAG 1 cut(s) 76
BsePI GCGCGC 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 4 cut(s) 5, 27, 129, 176
BslFI GGGAC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 4 cut(s) 5, 27, 129, 176
Bsp143I GATC 4 cut(s) 21, 67, 168, 188
BspACI CCGC 1 cut(s) 75
BspANI GGCC 4 cut(s) 5, 27, 129, 176
BspCNI CTCAG 1 cut(s) 75
BspFNI CGCG 1 cut(s) 48
BspPI GGATC 1 cut(s) 196
BssHII GCGCGC 1 cut(s) 46
BssMI GATC 4 cut(s) 21, 67, 168, 188
BstC8I GCNNGC 2 cut(s) 48, 52
BstDEI CTNAG 1 cut(s) 62
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 2 cut(s) 48, 50
BstKTI GATC 4 cut(s) 24, 70, 171, 191
BstMBI GATC 4 cut(s) 21, 67, 168, 188
BstMWI GCNNNNNNNGC 3 cut(s) 24, 72, 81
BstNSI RCATGY 1 cut(s) 88
BstUI CGCG 1 cut(s) 48
BsuRI GGCC 4 cut(s) 5, 27, 129, 176
Cac8I GCNNGC 2 cut(s) 48, 52
CfoI GCGC 2 cut(s) 48, 50
CviAII CATG 3 cut(s) 71, 85, 178
CviJI RGCY 8 cut(s) 5, 18, 27, 101, 129, 163, 176, 198
CviKI_1 RGCY 8 cut(s) 5, 18, 27, 101, 129, 163, 176, 198
DdeI CTNAG 1 cut(s) 62
DpnI GATC 4 cut(s) 23, 69, 170, 190
DpnII GATC 4 cut(s) 21, 67, 168, 188
EaeI YGGCCR 2 cut(s) 3, 174
FaeI CATG 3 cut(s) 74, 88, 181
FaiI YATR 3 cut(s) 72, 86, 179
FaqI GGGAC 1 cut(s) 73
FatI CATG 3 cut(s) 70, 84, 177
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 76
GlaI GCGC 2 cut(s) 47, 49
GluI GCNGC 1 cut(s) 76
GsaI CCCAGC 1 cut(s) 46
HaeIII GGCC 4 cut(s) 5, 27, 129, 176
HhaI GCGC 2 cut(s) 48, 50
Hin1II CATG 3 cut(s) 74, 88, 181
Hin6I GCGC 2 cut(s) 46, 48
HinP1I GCGC 2 cut(s) 46, 48
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 1 cut(s) 133
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 2 cut(s) 116, 122
HpyAV CCTTC 2 cut(s) 117, 151
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 72, 81
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 3 cut(s) 74, 88, 181
HspAI GCGC 2 cut(s) 46, 48
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 4 cut(s) 21, 67, 168, 188
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 19, 56, 143, 171
MalI GATC 4 cut(s) 23, 69, 170, 190
MboI GATC 4 cut(s) 21, 67, 168, 188
MfeI CAATTG 1 cut(s) 144
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 138, 144
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 7 cut(s) 38, 67, 71, 73, 119, 142, 147
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 1 cut(s) 144
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 24, 72, 81
NdeII GATC 4 cut(s) 21, 67, 168, 188
NlaIII CATG 3 cut(s) 74, 88, 181
NspI RCATGY 1 cut(s) 88
PauI GCGCGC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 42
PteI GCGCGC 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 176
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 4 cut(s) 21, 67, 168, 188
SetI ASST 5 cut(s) 20, 59, 103, 153, 165
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 2 cut(s) 138, 144
SsiI CCGC 1 cut(s) 75
TasI AATT 2 cut(s) 138, 144
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 133
TspGWI ACGGA 1 cut(s) 100
XapI RAATTY 1 cut(s) 138
XceI RCATGY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.