Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005877.1

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Forward (+)

27963 .. 30996

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005877.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggatgacgagccctcagtggcaccaccgcaaccgctttctccttcatcctccaattcacccctcggaaactccgtgatccccatagtgaacaagctccaggaaattttcgcgcagcttggttcccaatccactatcaagctccctcaggtcgccattgtcggcagccacagtagcggcaagtccagtgtgctcgaggccgttgtaggctgtgacttcttgcccccaaagaactcgatgccgccattgacgtgctttcaagctctgcgtagaggtccaaacgacgttatattcaagccaaggaggaattctcgagaagaacgactctccattgtggcgaggcaataccgagctctatgggaagtagaacatgtagattgcagttttgctgcagctggtcaacagtctcttttcttgtgggggagtgctagcaccgttcgggtgcggtcgtcgggggtgtcccttgacctgatttcttttcgagcgattgcagacgaggagagcaccaacctcgtcgcggggtcttttgtgccttgtggtgcggactttgctgaagtttcttcttggcgttacccttgcttggctggttccgtaaccgttgtggtcccggtgctacaatcggctctcgaggagtctgggactgaaacacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

217

Amino Acids

23.25

Weight (kDa)

5.45

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccII	CGCG	2 cut(s)	113, 518
AciI	CCGC	7 cut(s)	29, 35, 177, 242, 445, 518, 542
AclWI	GGATC	1 cut(s)	73
AcsI	RAATTY	2 cut(s)	105, 307
AcuI	CTGAAG	1 cut(s)	573
AfiI	CCNNNNNNNGG	2 cut(s)	517, 580
AflIII	ACRYGT	2 cut(s)	370, 647
AgsI	TTSAA	2 cut(s)	260, 295
AjiI	CACGTC	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	6 cut(s)	97, 118, 142, 263, 353, 395
AluI	AGCT	6 cut(s)	97, 118, 142, 263, 353, 395
Alw21I	GWGCWC	3 cut(s)	195, 355, 506
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	3 cut(s)	194, 312, 626
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	4 cut(s)	115, 165, 389, 392
ApoI	RAATTY	2 cut(s)	105, 307
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	275, 604
AsuC2I	CCSGG	1 cut(s)	608
AsuHPI	GGTGA	1 cut(s)	51
AsuNHI	GCTAGC	1 cut(s)	428
AvaI	CYCGRG	3 cut(s)	194, 312, 626
AvaII	GGWCC	2 cut(s)	275, 604
AxyI	CCTNAGG	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	15, 355
Bbv12I	GWGCWC	3 cut(s)	195, 355, 506
BbvI	GCAGC	4 cut(s)	127, 177, 376, 404
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	493, 527
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	608
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	390
BisI	GCNGC	6 cut(s)	116, 166, 178, 242, 390, 393
BlsI	GCNGC	6 cut(s)	117, 167, 179, 243, 391, 394
Bme1390I	CCNGG	2 cut(s)	101, 608
Bme18I	GGWCC	2 cut(s)	275, 604
BmeT110I	CYCGRG	3 cut(s)	194, 312, 626
BmgBI	CACGTC	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	275, 604
BmiI	GGNNCC	4 cut(s)	24, 124, 589, 606
BmrFI	CCNGG	2 cut(s)	101, 608
BmsI	GCATC	1 cut(s)	228
BmtI	GCTAGC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpmI	CTGGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	64, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 580
Bse1I	ACTGG	1 cut(s)	186
Bse21I	CCTNAGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	64, 299
BseGI	GGATG	2 cut(s)	10, 47
BseLI	CCNNNNNNNGG	2 cut(s)	517, 580
BseMII	CTCAG	2 cut(s)	30, 161
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	2 cut(s)	512, 644
BseXI	GCAGC	4 cut(s)	127, 177, 376, 404
Bsh1236I	CGCG	2 cut(s)	113, 518
Bsh1285I	CGRYCG	1 cut(s)	449
BshFI	GGCC	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	449
BsiHKAI	GWGCWC	3 cut(s)	195, 355, 506
BsiHKCI	CYCGRG	3 cut(s)	194, 312, 626
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	2 cut(s)	445, 590
BslI	CCNNNNNNNGG	2 cut(s)	517, 580
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	2 cut(s)	445, 590
BsnI	GGCC	1 cut(s)	200
BsoBI	CYCGRG	3 cut(s)	194, 312, 626
Bsp1286I	GDGCHC	4 cut(s)	15, 195, 355, 506
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	7 cut(s)	29, 35, 177, 242, 445, 518, 542
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	2 cut(s)	29, 160
BspFNI	CGCG	2 cut(s)	113, 518
BspLI	GGNNCC	4 cut(s)	24, 124, 589, 606
BspMAI	CTGCAG	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	64, 299
BssMI	GATC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	4 cut(s)	173, 405, 436, 598
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	16, 147
BstF5I	GGATG	2 cut(s)	10, 47
BstFNI	CGCG	2 cut(s)	113, 518
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	1 cut(s)	449
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 548
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	99, 606
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	2 cut(s)	113, 518
BstV1I	GCAGC	4 cut(s)	127, 177, 376, 404
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	200
BtrI	CACGTC	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	10, 47
BtsIMutI	CAGTG	2 cut(s)	24, 193
Cac8I	GCNNGC	1 cut(s)	430
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	275, 604
CviAII	CATG	1 cut(s)	371
DdeI	CTNAG	2 cut(s)	16, 147
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	299
Eco24I	GRGCYC	2 cut(s)	15, 355
Eco47I	GGWCC	2 cut(s)	275, 604
Eco53kI	GAGCTC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	573
Eco81I	CCTNAGG	1 cut(s)	147
Eco88I	CYCGRG	3 cut(s)	194, 312, 626
EcoICRI	GAGCTC	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	299
EcoT38I	GRGCYC	2 cut(s)	15, 355
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	1 cut(s)	374
FaiI	YATR	4 cut(s)	86, 290, 358, 372
FaqI	GGGAC	2 cut(s)	445, 590
FatI	CATG	1 cut(s)	370
FauI	CCCGC	1 cut(s)	511
Fnu4HI	GCNGC	6 cut(s)	116, 166, 178, 242, 390, 393
FokI	GGATG	2 cut(s)	17, 34
FriOI	GRGCYC	2 cut(s)	15, 355
Fsp4HI	GCNGC	6 cut(s)	116, 166, 178, 242, 390, 393
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	6 cut(s)	116, 166, 178, 242, 390, 393
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	608
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	401
HindII	GTYRAC	1 cut(s)	401
HinfI	GANTC	2 cut(s)	324, 632
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	91, 401
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	3 cut(s)	312, 314, 626
Hpy8I	GTNNAC	2 cut(s)	91, 401
Hpy99I	CGWCG	3 cut(s)	287, 454, 518
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	4 cut(s)	173, 405, 436, 598
HpyCH4IV	ACGT	3 cut(s)	251, 285, 649
HpyCH4V	TGCA	3 cut(s)	381, 392, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 548
HpyF3I	CTNAG	2 cut(s)	16, 147
HpySE526I	ACGT	3 cut(s)	251, 285, 649
Hsp92II	CATG	1 cut(s)	374
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	102, 147
LpnPI	CCDG	9 cut(s)	86, 113, 134, 199, 381, 482, 570, 621, 621
Lsp1109I	GCAGC	4 cut(s)	127, 177, 376, 404
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	3 cut(s)	251, 285, 649
MaeIII	GTNAC	3 cut(s)	212, 569, 592
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	2 cut(s)	329, 552
MhlI	GDGCHC	4 cut(s)	15, 195, 355, 506
MluCI	AATT	3 cut(s)	55, 105, 307
MlyI	GAGTC	2 cut(s)	318, 641
MslI	CAYNNNNRTG	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	101, 608
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	2 cut(s)	113, 518
MwoI	GCNNNNNNNGC	2 cut(s)	174, 548
NciI	CCSGG	1 cut(s)	608
NdeII	GATC	1 cut(s)	78
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	4 cut(s)	24, 124, 589, 606
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	374
PaeR7I	CTCGAG	3 cut(s)	194, 312, 626
PciI	ACATGT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 319
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	6 cut(s)	117, 167, 179, 243, 391, 394
PleI	GAGTC	2 cut(s)	318, 640
PpsI	GAGTC	2 cut(s)	318, 640
PscI	ACATGT	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	4 cut(s)	24, 124, 589, 606
PspPI	GGNCC	2 cut(s)	275, 604
PspXI	VCTCGAGB	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	355
SatI	GCNGC	6 cut(s)	116, 166, 178, 242, 390, 393
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	2 cut(s)	275, 604
SchI	GAGTC	2 cut(s)	318, 641
ScrFI	CCNGG	2 cut(s)	101, 608
SduI	GDGCHC	4 cut(s)	15, 195, 355, 506
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	3 cut(s)	194, 312, 626
SinI	GGWCC	2 cut(s)	275, 604
SlaI	CTCGAG	3 cut(s)	194, 312, 626
SmiMI	CAYNNNNRTG	1 cut(s)	250
SmlI	CTYRAG	3 cut(s)	194, 312, 626
SmoI	CTYRAG	3 cut(s)	194, 312, 626
Sse9I	AATT	3 cut(s)	55, 105, 307
SsiI	CCGC	7 cut(s)	29, 35, 177, 242, 445, 518, 542
SspMI	CTAG	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	99, 606
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	4 cut(s)	173, 405, 436, 598
TaiI	ACGT	3 cut(s)	254, 288, 652
TaqI	TCGA	5 cut(s)	195, 236, 313, 481, 627
TasI	AATT	3 cut(s)	55, 105, 307
TauI	GCSGC	2 cut(s)	180, 244
TscAI	CASTG	2 cut(s)	24, 193
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	4 cut(s)	115, 165, 389, 392
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	2 cut(s)	64, 580
TspRI	CASTG	2 cut(s)	24, 193
VpaK11BI	GGWCC	2 cut(s)	275, 604
XapI	RAATTY	2 cut(s)	105, 307
XceI	RCATGY	1 cut(s)	374
XhoI	CTCGAG	3 cut(s)	194, 312, 626
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.