Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Forward (+)

3170608 .. 3171634

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005971

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGATTTTGAAGAATTGGAGAGCTTGATCGGCCTCGTTAACCGAATCCAGCTAGCCTGCACCGCTTTCGGCTATTATGGCAGCGAGGGCATGTCGCTCTGGGAAGATCTCCCTTCCGTCACTGTTGTCGGAGGCCAGAGTTCCAGGAAGTCTCGGTTTGGGAAAGCATGGTGGGGAGAGGTTTCTTGCCCCGTGGATCCGGTAATTCTCGCCTTCTTCAATTTCTACATTTCTGTTTGGTGTGTTATGGTTAATTGGGAATGCAATAATGAATTTTGCAAGTGCGAGTACTATTCAGTATGTGGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

104

Amino Acids

11.68

Weight (kDa)

4.37

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	2 cut(s)	191, 204
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	11, 220
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	2 cut(s)	24, 52
AluI	AGCT	2 cut(s)	24, 52
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	191, 204
AoxI	GGCC	2 cut(s)	31, 133
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	272
AsuNHI	GCTAGC	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	53
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	145
BmtI	GCTAGC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	33, 135
BsiSI	CCGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	33, 135
Bsp143I	GATC	4 cut(s)	27, 106, 196, 305
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	2 cut(s)	33, 135
BspLI	GGNNCC	1 cut(s)	198
BspOI	GCTAGC	1 cut(s)	56
BspPI	GGATC	2 cut(s)	191, 204
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	4 cut(s)	27, 106, 196, 305
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	54, 58
BstDSI	CCRYGG	1 cut(s)	192
BstKTI	GATC	4 cut(s)	30, 109, 199, 308
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	4 cut(s)	27, 106, 196, 305
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 62, 78, 87
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	93
BstX2I	RGATCY	2 cut(s)	106, 196
BstYI	RGATCY	2 cut(s)	106, 196
BsuRI	GGCC	2 cut(s)	33, 135
BtgI	CCRYGG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	54, 58
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	91, 168
CviJI	RGCY	6 cut(s)	24, 33, 52, 56, 72, 135
CviKI_1	RGCY	6 cut(s)	24, 33, 52, 56, 72, 135
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	4 cut(s)	29, 108, 198, 307
DpnII	GATC	4 cut(s)	27, 106, 196, 305
EcoRII	CCWGG	1 cut(s)	143
FaeI	CATG	2 cut(s)	94, 171
FaiI	YATR	5 cut(s)	78, 92, 169, 248, 301
FatI	CATG	2 cut(s)	90, 167
Fnu4HI	GCNGC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	33, 135
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	2 cut(s)	94, 171
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	45
HpaI	GTTAAC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	123, 223
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	60, 264, 279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 62, 78, 87
Hsp92II	CATG	2 cut(s)	94, 171
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	27, 106, 196, 305
LpnPI	CCDG	7 cut(s)	62, 70, 85, 130, 149, 157, 213
Lsp1109I	GCAGC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	4 cut(s)	29, 108, 198, 307
MboI	GATC	4 cut(s)	27, 106, 196, 305
MboII	GAAGA	3 cut(s)	23, 116, 208
MflI	RGATCY	2 cut(s)	106, 196
MluCI	AATT	5 cut(s)	14, 204, 220, 253, 272
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	44, 79, 125, 172
MseI	TTAA	2 cut(s)	39, 252
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	4 cut(s)	30, 62, 78, 87
NdeII	GATC	4 cut(s)	27, 106, 196, 305
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	94, 171
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	94
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	198
PsuI	RGATCY	2 cut(s)	106, 196
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	39, 252
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	4 cut(s)	27, 106, 196, 305
ScaI	AGTACT	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	3 cut(s)	26, 54, 183
Sse9I	AATT	5 cut(s)	14, 204, 220, 253, 272
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	5 cut(s)	14, 204, 220, 253, 272
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	39, 252
Tru9I	TTAA	2 cut(s)	39, 252
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	285
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	94
XspI	CTAG	1 cut(s)	53
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.