Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

64348622 .. 64350869

Gene Structure 2248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCGTTACCTTTGTAGTTTCTGCCTTTTGGCCAAGGATTATCTTTTATGGTATTTGGCCAGATTGGAGAGCTTGATTGGCCTCGTTAACCGAATCCAGCTAGCTTTCCGCGATTATGGCAGCGAGGGCATTTCACTCCCACCTCTTAATTTCTGTCACTTTTTCTATTCGATTTTCCAGGAAGTCTCGGTTTGGGAAAGCATGGTGGGGAGAGGTTTCTTGCCTTGTGGATCCGGTATTGTGGTGAGGAGACCATTAGTGTTGCAGCTTCATCGGATAGTGGATAGGCGATCTGAATATGCAGAGTTTCTTCATGCGCCTAGGAAGAAGTTTACTGATTTTGCTTCTGTACACAAGGAGATCTCAGATGAGACTGATCGCATAATTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

130

Amino Acids

15.15

Weight (kDa)

8.4

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	63 - 128	1.6e-07	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	2 cut(s)	225, 238
AcoI	YGGCCR	2 cut(s)	30, 57
AfaI	GTAC	1 cut(s)	351
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	72, 100, 104, 268
AluI	AGCT	4 cut(s)	72, 100, 104, 268
Alw26I	GTCTC	3 cut(s)	190, 244, 365
AlwI	GGATC	2 cut(s)	225, 238
AoxI	GGCC	3 cut(s)	30, 57, 79
ApeKI	GCWGC	2 cut(s)	120, 265
AspA2I	CCTAGG	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	256
AsuNHI	GCTAGC	1 cut(s)	100
AvrII	CCTAGG	1 cut(s)	320
BalI	TGGCCA	2 cut(s)	32, 59
BamHI	GGATCC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	132, 277
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	3 cut(s)	190, 244, 365
BfaI	CTAG	2 cut(s)	101, 321
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	2 cut(s)	121, 266
BlnI	CCTAGG	1 cut(s)	320
BlsI	GCNGC	2 cut(s)	122, 267
Bme1390I	CCNGG	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	179
BmtI	GCTAGC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	33, 320
BsaWI	WCCGGW	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	33, 320
BseMII	CTCAG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	132, 277
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	32, 59, 81
BsiSI	CCGG	1 cut(s)	234
BsmAI	GTCTC	3 cut(s)	190, 244, 365
BsnI	GGCC	3 cut(s)	32, 59, 81
Bso31I	GGTCTC	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	230, 290, 360, 376
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	3 cut(s)	32, 59, 81
BspCNI	CTCAG	1 cut(s)	377
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	225, 238
BspTNI	GGTCTC	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	33, 320
BssMI	GATC	4 cut(s)	230, 290, 360, 376
BssT1I	CCWWGG	2 cut(s)	33, 320
Bst2UI	CCWGG	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	4 cut(s)	233, 293, 363, 379
BstMAI	GTCTC	3 cut(s)	190, 244, 365
BstMBI	GATC	4 cut(s)	230, 290, 360, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 117, 126
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	132, 277
BstX2I	RGATCY	2 cut(s)	230, 360
BstYI	RGATCY	2 cut(s)	230, 360
BsuRI	GGCC	3 cut(s)	32, 59, 81
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	2 cut(s)	202, 314
CviJI	RGCY	7 cut(s)	32, 59, 72, 81, 100, 104, 268
CviKI_1	RGCY	7 cut(s)	32, 59, 72, 81, 100, 104, 268
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	4 cut(s)	232, 292, 362, 378
DpnII	GATC	4 cut(s)	230, 290, 360, 376
EaeI	YGGCCR	2 cut(s)	30, 57
Eco130I	CCWWGG	2 cut(s)	33, 320
Eco31I	GGTCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	33, 320
ErhI	CCWWGG	2 cut(s)	33, 320
FaeI	CATG	2 cut(s)	205, 317
FaiI	YATR	6 cut(s)	49, 117, 203, 300, 315, 383
FatI	CATG	2 cut(s)	201, 313
Fnu4HI	GCNGC	2 cut(s)	121, 266
Fsp4HI	GCNGC	2 cut(s)	121, 266
FspBI	CTAG	2 cut(s)	101, 321
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	2 cut(s)	121, 266
HaeIII	GGCC	3 cut(s)	32, 59, 81
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	2 cut(s)	205, 317
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	93
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	3 cut(s)	88, 333, 352
Hpy188I	TCNGA	3 cut(s)	276, 295, 367
Hpy8I	GTNNAC	3 cut(s)	88, 333, 352
HpyCH4V	TGCA	2 cut(s)	265, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 117, 126
HpyF3I	CTNAG	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	205, 317
HspAI	GCGC	1 cut(s)	317
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	230, 290, 360, 376
LpnPI	CCDG	5 cut(s)	73, 110, 164, 191, 247
Lsp1109I	GCAGC	2 cut(s)	132, 277
MaeI	CTAG	2 cut(s)	101, 321
MaeIII	GTNAC	2 cut(s)	5, 155
MalI	GATC	4 cut(s)	232, 292, 362, 378
MboI	GATC	4 cut(s)	230, 290, 360, 376
MboII	GAAGA	2 cut(s)	302, 337
MflI	RGATCY	2 cut(s)	230, 360
MlsI	TGGCCA	2 cut(s)	32, 59
MluCI	AATT	2 cut(s)	148, 384
MluNI	TGGCCA	2 cut(s)	32, 59
MnlI	CCTC	5 cut(s)	92, 118, 153, 206, 240
Mox20I	TGGCCA	2 cut(s)	32, 59
MscI	TGGCCA	2 cut(s)	32, 59
MseI	TTAA	2 cut(s)	87, 147
Msp20I	TGGCCA	2 cut(s)	32, 59
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	78, 117, 126
NdeII	GATC	4 cut(s)	230, 290, 360, 376
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	205, 317
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	122, 267
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	230, 360
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SaqAI	TTAA	2 cut(s)	87, 147
SatI	GCNGC	2 cut(s)	121, 266
Sau3AI	GATC	4 cut(s)	230, 290, 360, 376
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	7 cut(s)	12, 74, 102, 106, 145, 217, 270
Sse9I	AATT	2 cut(s)	148, 384
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	2 cut(s)	101, 321
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	2 cut(s)	33, 320
TaqI	TCGA	1 cut(s)	170
TasI	AATT	2 cut(s)	148, 384
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	87, 147
Tru9I	TTAA	2 cut(s)	87, 147
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	120, 265
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	260, 302
XmaJI	CCTAGG	1 cut(s)	320
XspI	CTAG	2 cut(s)	101, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.