Rroxscaffold_1G00024810
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000383
Physical Location & Seq
Forward (+)
30881758 .. 30886482
4725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024810.1

Sequence Viewer

Length: 387 bp
ATGGAGAACCTGATCTCACTGGTCAACAAAATCCAAAGTGCTTGCACAGCTCTCGGTGACCACGGCGAAACCCGCGCATTACCCACTCTTTGGGACTCGCTTCCCTCCATCGCTGCCGTCGGTGGCCAGGTTCCTTATGTTGCAAAGTGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAACGTTCAGTCAGATTGTGTTCATCTTTTTCCTTACTGTCCTAAATCCGAATTCCATGAAAATTCATTCTTTGCTGACTAGTGCTCTAAAGCCCATATGCAGTGTAAGATTTCTACCGGTGACTAAGATACATACCCGCAAAGGAGATCTTGGAACTGTTGCTATTTCTGTAGTTTTCGTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

128

Amino Acids

13.71

Weight (kDa)

9.83

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AccI GTMKAC 1 cut(s) 175
AccII CGCG 1 cut(s) 75
AciI CCGC 2 cut(s) 73, 337
AclI AACGTT 1 cut(s) 203
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 2 cut(s) 250, 261
AfiI CCNNNNNNNGG 1 cut(s) 90
AgeI ACCGGT 1 cut(s) 316
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 286
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 250, 261
AsiGI ACCGGT 1 cut(s) 316
AspLEI GCGC 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 68, 331
BalI TGGCCA 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 116
BceAI ACGGC 2 cut(s) 79, 101
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 369
BglII AGATCT 1 cut(s) 346
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 126
BshTI ACCGGT 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 12, 346
BspACI CCGC 2 cut(s) 73, 337
BspANI GGCC 1 cut(s) 126
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 2 cut(s) 12, 346
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 238, 358
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 1 cut(s) 61
BstEII GGTNACC 1 cut(s) 56
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 2 cut(s) 15, 349
BstMBI GATC 2 cut(s) 12, 346
BstMWI GCNNNNNNNGC 2 cut(s) 47, 72
BstNI CCWGG 1 cut(s) 128
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 369
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 17, 307
Cac8I GCNNGC 1 cut(s) 43
CciI TCATGA 1 cut(s) 165
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 316
CspAI ACCGGT 1 cut(s) 316
CviAII CATG 2 cut(s) 166, 256
CviJI RGCY 3 cut(s) 50, 126, 292
CviKI_1 RGCY 3 cut(s) 50, 126, 292
DdeI CTNAG 1 cut(s) 324
DpnI GATC 2 cut(s) 14, 348
DpnII GATC 2 cut(s) 12, 346
EaeI YGGCCR 1 cut(s) 124
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 169, 259
FaiI YATR 6 cut(s) 138, 167, 257, 296, 298, 333
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 165, 255
FauI CCCGC 2 cut(s) 80, 344
FauNDI CATATG 1 cut(s) 296
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 317
HhaI GCGC 1 cut(s) 77
Hin1II CATG 2 cut(s) 169, 259
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 317
HphI GGTGA 2 cut(s) 68, 331
Hpy166II GTNNAC 2 cut(s) 25, 176
Hpy188I TCNGA 2 cut(s) 213, 249
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 2 cut(s) 25, 176
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 238, 358
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 3 cut(s) 45, 143, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 72
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 2 cut(s) 169, 259
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 2 cut(s) 12, 346
LpnPI CCDG 5 cut(s) 5, 23, 113, 140, 330
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 56, 319
MalI GATC 2 cut(s) 14, 348
MboI GATC 2 cut(s) 12, 346
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 126
MluCI AATT 2 cut(s) 250, 261
MluNI TGGCCA 1 cut(s) 126
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 2 cut(s) 115, 191
Mox20I TGGCCA 1 cut(s) 126
MscI TGGCCA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 126
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 47, 72
NdeI CATATG 1 cut(s) 296
NdeII GATC 2 cut(s) 12, 346
NlaIII CATG 2 cut(s) 169, 259
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 56, 319
PagI TCATGA 1 cut(s) 165
PflMI CCANNNNNTGG 1 cut(s) 90
PinAI ACCGGT 1 cut(s) 316
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp1406I AACGTT 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 126
PspEI GGTNACC 1 cut(s) 56
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 132
PsuI RGATCY 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 12, 346
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 286
SetI ASST 4 cut(s) 12, 52, 132, 206
SfcI CTRYAG 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 164
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 2 cut(s) 250, 261
SsiI CCGC 2 cut(s) 73, 337
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 238, 358
TaiI ACGT 1 cut(s) 206
TasI AATT 2 cut(s) 250, 261
TscAI CASTG 2 cut(s) 24, 307
TseFI GTSAC 2 cut(s) 56, 319
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 2 cut(s) 56, 319
TspDTI ATGAA 4 cut(s) 154, 211, 254, 272
TspRI CASTG 2 cut(s) 24, 307
Van91I CCANNNNNTGG 1 cut(s) 90
XapI RAATTY 2 cut(s) 250, 261
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.