Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

64713196 .. 64718679

Gene Structure 5484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCCGACGAGCCCTCGGTGGCACCACCGCAACCGCCTTCTCCTTCATCCTCTAATTTGCCCCTCCGAAACTCCGTGATCCCCGTAGTGAACAAGCTCCGGGACATCTTGGCGCAGCTCGGTTCCCAATCCACCATCGAGCTCCCTCGAGTCGCCGTTGTCGGCCGCGAGAATTTGTCCAGCTTGAATCTTAGCGGGGAGATTTCGCCAGCCCTTGGAGATTTGGGAAACTTGGAATCCATATTGTTGCTCGCAAACTGTCCAGTGCTTTTCCTATCAGCAACTTGTTTCTACAGTCGCCTCAAGAAAAGTGAAGAACTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

108

Amino Acids

11.47

Weight (kDa)

4.96

Isoelectric Point (pI)

78.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccII	CGCG	1 cut(s)	168
AciI	CCGC	4 cut(s)	29, 35, 166, 195
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	2 cut(s)	3, 163
AcsI	RAATTY	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	187
AhlI	ACTAGT	1 cut(s)	319
AluBI	AGCT	4 cut(s)	97, 118, 142, 183
AluI	AGCT	4 cut(s)	97, 118, 142, 183
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	3, 163
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	15, 144
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	319
BfaI	CTAG	2 cut(s)	320, 325
BfmI	CTRYAG	1 cut(s)	292
BisI	GCNGC	2 cut(s)	116, 166
BlsI	GCNGC	2 cut(s)	117, 167
Bme1390I	CCNGG	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	24, 124
BmrFI	CCNGG	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	15, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	15, 214
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	5, 165
BshNI	GGYRCC	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	5, 165
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	15, 144
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	4 cut(s)	29, 35, 166, 195
BspANI	GGCC	2 cut(s)	5, 165
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	24, 124
BspPI	GGATC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	15, 214
BssMI	GATC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	260, 296
BstC8I	GCNNGC	2 cut(s)	210, 252
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	127
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	5, 165
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	210, 252
CfoI	GCGC	1 cut(s)	115
CviJI	RGCY	8 cut(s)	5, 13, 97, 118, 142, 165, 183, 212
CviKI_1	RGCY	8 cut(s)	5, 13, 97, 118, 142, 165, 183, 212
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	2 cut(s)	3, 163
EagI	CGGCCG	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	142
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	15, 144
Eco52I	CGGCCG	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	214
EcoT38I	GRGCYC	2 cut(s)	15, 144
ErhI	CCWWGG	1 cut(s)	214
FaiI	YATR	1 cut(s)	242
FaqI	GGGAC	1 cut(s)	116
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	116, 166
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	2 cut(s)	15, 144
Fsp4HI	GCNGC	2 cut(s)	116, 166
FspBI	CTAG	2 cut(s)	320, 325
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	2 cut(s)	116, 166
HaeIII	GGCC	2 cut(s)	5, 165
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	3 cut(s)	150, 187, 236
HpaII	CCGG	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	48, 54
HpyCH4III	ACNGT	2 cut(s)	260, 296
HpyF3I	CTNAG	1 cut(s)	191
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	102, 147
LpnPI	CCDG	4 cut(s)	113, 193, 222, 276
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	320, 325
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	15, 144
MluCI	AATT	2 cut(s)	55, 172
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	5 cut(s)	25, 61, 74, 156, 311
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	168
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	78
NlaIV	GGNNCC	2 cut(s)	24, 124
PaeR7I	CTCGAG	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	187, 236
PflMI	CCANNNNNTGG	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	117, 167
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	24, 124
PspXI	VCTCGAGB	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	144
SatI	GCNGC	2 cut(s)	116, 166
Sau3AI	GATC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	15, 144
SetI	ASST	4 cut(s)	99, 120, 144, 185
SfcI	CTRYAG	1 cut(s)	292
Sfr274I	CTCGAG	1 cut(s)	147
SlaI	CTCGAG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	147, 302
SmoI	CTYRAG	2 cut(s)	147, 302
SpeI	ACTAGT	1 cut(s)	319
Sse9I	AATT	2 cut(s)	55, 172
SsiI	CCGC	4 cut(s)	29, 35, 166, 195
SspMI	CTAG	2 cut(s)	320, 325
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	260, 296
TaqI	TCGA	2 cut(s)	138, 148
TasI	AATT	2 cut(s)	55, 172
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	187, 236
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	270
Van91I	CCANNNNNTGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	147
XspI	CTAG	2 cut(s)	320, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.