Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

59834744 .. 59835681

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G032760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGGCCGAGATCAACCCAGGTGCAGAGGCCGGCATCATCCTCCTCCTTCCGGCAGCCGGAGGCACCAAAGCTCTCCCCTCGGAGGCCGTTCCGGCGACCAAAGCTCAGAGCTCCTCCTCTGCAACAATGGCGGCCAACCTGGTTCCGGCAACCGGAGCCGTCGCTTACACCAAAACTGGCCCGTCGGAGGCCGTTCCGGCGACCAAAGCTCCGAGCTCCTCCTCTGCAACAATGGCAGCCAACCTGGTTCCGGCAACCGGAGCCGTCGCTCACACCAAAGCTGGCCCGTCGGAGAACCCTGAGCAGCTCAACCTGGCCCCTCCGTCGTCTCCAGAACGCGCAAACCACCTGTACAAGACGAGGTTATGCGTGTATGATCGGGAGAATTGCCCCGACGGAGAGAACTGCGAATTTGCGCACAGCGAGGCGGAGATTCGCCTGCCAACACGGCTCATCGACGGCGTATGCAGATACGGGGAAGGATGTCCGTACGGAGCCAGATGTTTCTACCGGTATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

174

Amino Acids

18.03

Weight (kDa)

5.8

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	65
AccII	CGCG	1 cut(s)	342
AciI	CCGC	2 cut(s)	134, 431
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	413
AfaI	GTAC	2 cut(s)	356, 494
AfiI	CCNNNNNNNGG	8 cut(s)	52, 59, 85, 148, 155, 190, 253, 260
AgeI	ACCGGT	1 cut(s)	513
AjnI	CCWGG	4 cut(s)	19, 141, 246, 315
AluBI	AGCT	7 cut(s)	74, 107, 114, 212, 219, 284, 310
AluI	AGCT	7 cut(s)	74, 107, 114, 212, 219, 284, 310
Alw21I	GWGCWC	2 cut(s)	116, 221
Alw26I	GTCTC	1 cut(s)	336
AoxI	GGCC	8 cut(s)	6, 30, 87, 135, 181, 192, 286, 318
ApeKI	GCWGC	3 cut(s)	56, 239, 307
ApoI	RAATTY	1 cut(s)	413
AsiGI	ACCGGT	1 cut(s)	513
AspLEI	GCGC	2 cut(s)	344, 421
AspS9I	GGNCC	3 cut(s)	182, 287, 319
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	116, 221
Bbv12I	GWGCWC	2 cut(s)	116, 221
BbvI	GCAGC	3 cut(s)	68, 251, 319
BceAI	ACGGC	6 cut(s)	74, 146, 179, 251, 467, 478
BciT130I	CCWGG	4 cut(s)	21, 143, 248, 317
BcoDI	GTCTC	1 cut(s)	336
BglI	GCCNNNNNGGC	3 cut(s)	95, 200, 451
BisI	GCNGC	4 cut(s)	57, 135, 240, 308
BlsI	GCNGC	4 cut(s)	58, 136, 241, 309
Bme1390I	CCNGG	4 cut(s)	21, 143, 248, 317
BmgT120I	GGNCC	3 cut(s)	182, 287, 319
BmiI	GGNNCC	7 cut(s)	67, 147, 160, 252, 265, 321, 499
BmrFI	CCNGG	4 cut(s)	21, 143, 248, 317
BmsI	GCATC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	19, 81
BsaWI	WCCGGW	3 cut(s)	155, 260, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	8 cut(s)	52, 59, 85, 148, 155, 190, 253, 260
Bse118I	RCCGGY	2 cut(s)	32, 513
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	4 cut(s)	21, 143, 248, 317
BseDI	CCNNGG	2 cut(s)	19, 81
BseGI	GGATG	2 cut(s)	39, 491
BseLI	CCNNNNNNNGG	8 cut(s)	52, 59, 85, 148, 155, 190, 253, 260
BseMII	CTCAG	2 cut(s)	122, 294
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	5 cut(s)	35, 106, 109, 211, 214
BseXI	GCAGC	3 cut(s)	68, 251, 319
BsgI	GTGCAG	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	8 cut(s)	8, 32, 89, 137, 183, 194, 288, 320
BshNI	GGYRCC	1 cut(s)	65
BshTI	ACCGGT	1 cut(s)	513
BsiHKAI	GWGCWC	2 cut(s)	116, 221
BsiWI	CGTACG	1 cut(s)	492
BslI	CCNNNNNNNGG	8 cut(s)	52, 59, 85, 148, 155, 190, 253, 260
BsmAI	GTCTC	1 cut(s)	336
BsmBI	CGTCTC	1 cut(s)	336
BsnI	GGCC	8 cut(s)	8, 32, 89, 137, 183, 194, 288, 320
Bsp1286I	GDGCHC	2 cut(s)	116, 221
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	12, 379
BspACI	CCGC	2 cut(s)	134, 431
BspANI	GGCC	8 cut(s)	8, 32, 89, 137, 183, 194, 288, 320
BspCNI	CTCAG	2 cut(s)	121, 295
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	7 cut(s)	67, 147, 160, 252, 265, 321, 499
BspT107I	GGYRCC	1 cut(s)	65
BsrFI	RCCGGY	2 cut(s)	32, 513
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	184
BssAI	RCCGGY	2 cut(s)	32, 513
BssECI	CCNNGG	2 cut(s)	19, 81
BssMI	GATC	2 cut(s)	12, 379
Bst2UI	CCWGG	4 cut(s)	21, 143, 248, 317
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	34, 286, 443
BstDEI	CTNAG	2 cut(s)	108, 303
BstF5I	GGATG	2 cut(s)	39, 491
BstFNI	CGCG	1 cut(s)	342
BstHHI	GCGC	2 cut(s)	344, 421
BstKTI	GATC	2 cut(s)	15, 382
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	2 cut(s)	12, 379
BstMWI	GCNNNNNNNGC	9 cut(s)	95, 104, 131, 158, 200, 209, 236, 263, 451
BstNI	CCWGG	4 cut(s)	21, 143, 248, 317
BstSCI	CCNGG	4 cut(s)	19, 141, 246, 315
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	68, 251, 319
BsuRI	GGCC	8 cut(s)	8, 32, 89, 137, 183, 194, 288, 320
BtsCI	GGATG	2 cut(s)	39, 491
Cac8I	GCNNGC	3 cut(s)	34, 286, 443
CfoI	GCGC	2 cut(s)	344, 421
Cfr10I	RCCGGY	2 cut(s)	32, 513
Cfr13I	GGNCC	3 cut(s)	182, 287, 319
CsiI	ACCWGGT	2 cut(s)	141, 246
Csp6I	GTAC	2 cut(s)	355, 493
CspAI	ACCGGT	1 cut(s)	513
CviQI	GTAC	2 cut(s)	355, 493
DdeI	CTNAG	2 cut(s)	108, 303
DpnI	GATC	2 cut(s)	14, 381
DpnII	GATC	2 cut(s)	12, 379
EaeI	YGGCCR	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	446
Ecl136II	GAGCTC	2 cut(s)	114, 219
Eco24I	GRGCYC	2 cut(s)	116, 221
Eco53kI	GAGCTC	2 cut(s)	114, 219
EcoICRI	GAGCTC	2 cut(s)	114, 219
EcoRII	CCWGG	4 cut(s)	19, 141, 246, 315
EcoT38I	GRGCYC	2 cut(s)	116, 221
Esp3I	CGTCTC	1 cut(s)	336
FaiI	YATR	3 cut(s)	370, 378, 469
Fnu4HI	GCNGC	4 cut(s)	57, 135, 240, 308
FokI	GGATG	2 cut(s)	26, 498
FriOI	GRGCYC	2 cut(s)	116, 221
Fsp4HI	GCNGC	4 cut(s)	57, 135, 240, 308
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	2 cut(s)	343, 420
GluI	GCNGC	4 cut(s)	57, 135, 240, 308
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	8 cut(s)	8, 32, 89, 137, 183, 194, 288, 320
HhaI	GCGC	2 cut(s)	344, 421
Hin6I	GCGC	2 cut(s)	342, 419
HinP1I	GCGC	2 cut(s)	342, 419
HinfI	GANTC	1 cut(s)	436
Hpy188I	TCNGA	5 cut(s)	85, 111, 190, 216, 295
Hpy188III	TCNNGA	2 cut(s)	335, 383
Hpy99I	CGWCG	7 cut(s)	167, 190, 272, 295, 331, 401, 464
HpyAV	CCTTC	2 cut(s)	59, 476
HpyCH4V	TGCA	4 cut(s)	26, 125, 230, 471
HpyF10VI	GCNNNNNNNGC	9 cut(s)	95, 104, 131, 158, 200, 209, 236, 263, 451
HpyF3I	CTNAG	2 cut(s)	108, 303
HspAI	GCGC	2 cut(s)	342, 419
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	12, 379
LmnI	GCTCC	6 cut(s)	119, 158, 217, 224, 263, 497
Lsp1109I	GCAGC	3 cut(s)	68, 251, 319
LweI	GCATC	1 cut(s)	45
MabI	ACCWGGT	2 cut(s)	141, 246
MalI	GATC	2 cut(s)	14, 381
MboI	GATC	2 cut(s)	12, 379
MhlI	GDGCHC	2 cut(s)	116, 221
MluCI	AATT	2 cut(s)	388, 413
MmeI	TCCRAC	2 cut(s)	168, 273
MroNI	GCCGGC	1 cut(s)	32
MspR9I	CCNGG	4 cut(s)	21, 143, 248, 317
MvaI	CCWGG	4 cut(s)	21, 143, 248, 317
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	9 cut(s)	95, 104, 131, 158, 200, 209, 236, 263, 451
NaeI	GCCGGC	1 cut(s)	34
NdeII	GATC	2 cut(s)	12, 379
NgoMIV	GCCGGC	1 cut(s)	32
NlaIV	GGNNCC	7 cut(s)	67, 147, 160, 252, 265, 321, 499
NmeAIII	GCCGAG	1 cut(s)	34
NsbI	TGCGCA	1 cut(s)	420
PdiI	GCCGGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	436
Pfl23II	CGTACG	1 cut(s)	492
PinAI	ACCGGT	1 cut(s)	513
PkrI	GCNGC	4 cut(s)	58, 136, 241, 309
Psp124BI	GAGCTC	2 cut(s)	116, 221
Psp6I	CCWGG	4 cut(s)	19, 141, 246, 315
PspGI	CCWGG	4 cut(s)	19, 141, 246, 315
PspLI	CGTACG	1 cut(s)	492
PspN4I	GGNNCC	7 cut(s)	67, 147, 160, 252, 265, 321, 499
PspPI	GGNCC	3 cut(s)	182, 287, 319
RsaI	GTAC	2 cut(s)	356, 494
RsaNI	GTAC	2 cut(s)	355, 493
SacI	GAGCTC	2 cut(s)	116, 221
SatI	GCNGC	4 cut(s)	57, 135, 240, 308
Sau3AI	GATC	2 cut(s)	12, 379
Sau96I	GGNCC	3 cut(s)	182, 287, 319
ScrFI	CCNGG	4 cut(s)	21, 143, 248, 317
SduI	GDGCHC	2 cut(s)	116, 221
SexAI	ACCWGGT	2 cut(s)	141, 246
SfaNI	GCATC	1 cut(s)	45
Sse9I	AATT	2 cut(s)	388, 413
SsiI	CCGC	2 cut(s)	134, 431
SstI	GAGCTC	2 cut(s)	116, 221
StyD4I	CCNGG	4 cut(s)	19, 141, 246, 315
TaqI	TCGA	1 cut(s)	459
TasI	AATT	2 cut(s)	388, 413
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	436
TseI	GCWGC	3 cut(s)	56, 239, 307
TspGWI	ACGGA	4 cut(s)	315, 414, 480, 510
XapI	RAATTY	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.