Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

64335232 .. 64337577

Gene Structure 2346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41064

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCGCTCTGGGAAGCTCTCCCTTCCGTTACCATCGTTGGAGGCCAGAGTTTCAGGAAGTCTTCGGTTTGGGAAAGCATGGTGGGGAGAGGTTTCTTGCCTTGTGGATCTGGTATTGTGGTGAGGAGACCATTAGTGTTGCAGCTTCATCGGGTAGTGGATGGGCGATCTGAATATGCAGAGTTTCTTCATGCGCCTAGGAAGAAGTTTACTGATTGTGCTTCTGTACACAAGGAGATCTCAGATGAGACTGATCGCATAATTGGTTGTAAATATATCTCCATAGATCTTCCTGGATTGACCAAGTTTTCTGTAGATGCCATTGAACTTGCAAGAGAGGTCGATCCATCAGGTACAAGATACCGGCAGAGGCTACGGCACTTTCATGTCCTTGTGATTGTTTATCAAAAGGATTGCTTCTTTTACAAGCCAAAACACTTTTTTTTTATGAGGTACAAGCCAAAACACTTACTTTATACTGTATGGTTGGCATTTTTAGGCAGAACATTTGGAGTGATAACAAAACTTGATCTAATGGACAAGGGAACCAACGCTTTCAATACTGCAACACCCATGATGGCTGCTTATAGAAAGGAGCAAGAATACTTGAAAACTAGTCCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

208

Amino Acids

24.01

Weight (kDa)

9.59

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	10 - 88	6.5e-11	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	115, 338
AfaI	GTAC	3 cut(s)	228, 355, 455
AgsI	TTSAA	3 cut(s)	326, 559, 610
AhlI	ACTAGT	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	17, 145
AluI	AGCT	2 cut(s)	17, 145
Alw26I	GTCTC	2 cut(s)	121, 242
AlwI	GGATC	2 cut(s)	115, 338
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	142, 581
AspA2I	CCTAGG	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	133
AvrII	CCTAGG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	154, 568
BccI	CCATC	4 cut(s)	41, 155, 355, 571
BceAI	ACGGC	1 cut(s)	392
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	121, 242
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	2 cut(s)	198, 615
BfmI	CTRYAG	1 cut(s)	312
BglII	AGATCT	2 cut(s)	237, 286
BisI	GCNGC	2 cut(s)	143, 582
BlnI	CCTAGG	1 cut(s)	197
BlsI	GCNGC	2 cut(s)	144, 583
Bme1390I	CCNGG	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	547
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	197
Bse118I	RCCGGY	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	154, 568
BshFI	GGCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	364
BsmAI	GTCTC	2 cut(s)	121, 242
BsnI	GGCC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	7 cut(s)	107, 167, 237, 253, 286, 343, 529
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	547
BspPI	GGATC	2 cut(s)	115, 338
BspTNI	GGTCTC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	7 cut(s)	107, 167, 237, 253, 286, 343, 529
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	481
BstAUI	TGTACA	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	7 cut(s)	110, 170, 240, 256, 289, 346, 532
BstMAI	GTCTC	2 cut(s)	121, 242
BstMBI	GATC	7 cut(s)	107, 167, 237, 253, 286, 343, 529
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	154, 568
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	3 cut(s)	107, 237, 286
BstYI	RGATCY	3 cut(s)	107, 237, 286
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	363
Csp6I	GTAC	3 cut(s)	227, 354, 454
CviAII	CATG	4 cut(s)	79, 191, 386, 574
CviJI	RGCY	7 cut(s)	17, 45, 145, 373, 430, 460, 581
CviKI_1	RGCY	7 cut(s)	17, 45, 145, 373, 430, 460, 581
CviQI	GTAC	3 cut(s)	227, 354, 454
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	7 cut(s)	109, 169, 239, 255, 288, 345, 531
DpnII	GATC	7 cut(s)	107, 167, 237, 253, 286, 343, 529
Eco130I	CCWWGG	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	4 cut(s)	82, 194, 389, 577
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	4 cut(s)	78, 190, 385, 573
Fnu4HI	GCNGC	2 cut(s)	143, 582
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	143, 582
FspBI	CTAG	2 cut(s)	198, 615
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	2 cut(s)	143, 582
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	364
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	4 cut(s)	82, 194, 389, 577
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	210, 229
Hpy188I	TCNGA	2 cut(s)	172, 244
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	2 cut(s)	210, 229
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4V	TGCA	4 cut(s)	142, 179, 332, 566
HpyF3I	CTNAG	1 cut(s)	241
Hsp92II	CATG	4 cut(s)	82, 194, 389, 577
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	7 cut(s)	107, 167, 237, 253, 286, 343, 529
LmnI	GCTCC	1 cut(s)	595
LpnPI	CCDG	7 cut(s)	40, 59, 96, 279, 306, 336, 377
Lsp1109I	GCAGC	2 cut(s)	154, 568
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	198, 615
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	7 cut(s)	109, 169, 239, 255, 288, 345, 531
MboI	GATC	7 cut(s)	107, 167, 237, 253, 286, 343, 529
MboII	GAAGA	4 cut(s)	54, 179, 214, 281
MflI	RGATCY	3 cut(s)	107, 237, 286
MluCI	AATT	2 cut(s)	261, 622
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	6 cut(s)	35, 83, 117, 331, 363, 444
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
NdeII	GATC	7 cut(s)	107, 167, 237, 253, 286, 343, 529
NlaIII	CATG	4 cut(s)	82, 194, 389, 577
NlaIV	GGNNCC	1 cut(s)	547
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	144, 583
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	547
PsuI	RGATCY	3 cut(s)	107, 237, 286
RsaI	GTAC	3 cut(s)	228, 355, 455
RsaNI	GTAC	3 cut(s)	227, 354, 454
RseI	CAYNNNNRTG	1 cut(s)	384
SatI	GCNGC	2 cut(s)	143, 582
Sau3AI	GATC	7 cut(s)	107, 167, 237, 253, 286, 343, 529
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	6 cut(s)	19, 94, 147, 342, 355, 455
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	384
SpeI	ACTAGT	1 cut(s)	614
Sse9I	AATT	2 cut(s)	261, 622
SspMI	CTAG	2 cut(s)	198, 615
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	481
TaqI	TCGA	1 cut(s)	342
TasI	AATT	2 cut(s)	261, 622
TatI	WGTACW	1 cut(s)	226
TseI	GCWGC	2 cut(s)	142, 581
TspDTI	ATGAA	3 cut(s)	137, 179, 374
TspGWI	ACGGA	1 cut(s)	16
XmaJI	CCTAGG	1 cut(s)	197
XspI	CTAG	2 cut(s)	198, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.