Rh4CG035400
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
7244754 .. 7247564
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG035400.1

Sequence Viewer

Length: 1026 bp
ATGAAAGAGACCAACGTCGTTCAGGCGAACAGCACGGAGACTAACGTCGTTCCGACCACTAACACAGAAACCTACGGCGTTTCGGCGACCAATACAGAGGTCAACGTCATTCCGGCGACCACGGAGACCAACGACTTCAGCTCCGTTTTCTCATATGACAATACCCAAGCTCTCTGCTTCAAATTCTCTTCGGTCGAAAATGAGTCCAAGTCTACTACTCGTTCCCCTTGGGTTGCGGGGACAGCTTACTTTGACGGCTCCAGAGAATGGATGTCAGGCCCGTCTACTTTTCTCTCAGCCGAGTTTCAGCCTGAGCAAGAAGGCAGTCCACCCGCATATCGCTGGTGGGCGGATCGCGATTATCTCGGAAACAAATACGCTGAGATTGGTAACGGGGAATCATACTCGGGAGTACCGAGGGTGCTGGAATTGAGTAACGGCGACGAAGTATCGCGCTTTGCCCTTGCTCCCGAATTCGTCCCTTCTTCTTCAACTGCCTGTAACCAGCCCCAGCACCAGCGTCAACCTCCAAAGCGTCCTCCACCGCTCTACAAGACGGAGTTTTGTCGGAAAACATCTTGCTCGAAGGGAGACCTGTGTGACTTTGCCCATAGTGTTGACGAGATTCGCATGCGACCCAAGTTCCCCTCAAAGTGCAAATGGATGGATGGCCTTTGGGGCACATTTGCCACCCTACAATTGGAGAGCATGATCGGCCTCGTTAACCGAATCCAGCTAGCCGGCGCTGCTTTCGGCGATCACGGCAGCGAGGGCATGTCACTCTGGGAAGCTCTCCCTTCCGTTACCGTCGTCGGAGGCCAGAGTTCCAGGAAGTCTTCCGTTTGGGAAAGCACGGTGAGGAGAGGTTTCTTGCCTCGTGGATCTGTTATTGTGGCGAGGAGACCATTAGTGTTGCAGCTTCATCGGATAGTGGATGGGCGATCTGAATATGCAGAGTTTCTTCATGCGCCTAGGAAGAAGTTTACTGATTTTGATTTTGTACACAAGGAGATCTCAGATGAGTGA

Protein Analysis

341

Amino Acids

38.02

Weight (kDa)

5.8

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 268 - 340 4.4e-10 Dynamin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 267
AccBSI CCGCTC 1 cut(s) 547
AccI GTMKAC 2 cut(s) 212, 284
AccII CGCG 2 cut(s) 357, 454
AciI CCGC 4 cut(s) 236, 333, 350, 545
AclWI GGATC 2 cut(s) 360, 889
AcsI RAATTY 2 cut(s) 182, 473
AcuI CTGAAG 1 cut(s) 121
AfaI GTAC 2 cut(s) 414, 1002
AfiI CCNNNNNNNGG 2 cut(s) 267, 700
AgsI TTSAA 2 cut(s) 181, 492
AjnI CCWGG 1 cut(s) 827
AluBI AGCT 6 cut(s) 141, 170, 245, 736, 791, 919
AluI AGCT 6 cut(s) 141, 170, 245, 736, 791, 919
Alw26I GTCTC 5 cut(s) 2, 32, 119, 585, 895
AlwI GGATC 2 cut(s) 360, 889
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 4 cut(s) 277, 670, 715, 817
ApeKI GCWGC 3 cut(s) 746, 765, 916
ApoI RAATTY 2 cut(s) 182, 473
AspA2I CCTAGG 1 cut(s) 971
AspLEI GCGC 3 cut(s) 456, 746, 970
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 868
AsuNHI GCTAGC 1 cut(s) 736
AvaI CYCGRG 1 cut(s) 406
AvrII CCTAGG 1 cut(s) 971
BaeGI GKGCMC 1 cut(s) 683
BauI CACGAG 1 cut(s) 876
BbsI GAAGAC 1 cut(s) 828
BbvI GCAGC 3 cut(s) 733, 777, 928
BccI CCATC 3 cut(s) 658, 662, 929
BceAI ACGGC 4 cut(s) 91, 271, 454, 778
BcgI CGANNNNNNTGC 2 cut(s) 905, 939
BciT130I CCWGG 1 cut(s) 829
BcoDI GTCTC 5 cut(s) 2, 32, 119, 585, 895
BfaI CTAG 2 cut(s) 737, 972
BfoI RGCGCY 1 cut(s) 747
BglI GCCNNNNNGGC 1 cut(s) 678
BglII AGATCT 1 cut(s) 1011
BisI GCNGC 3 cut(s) 747, 766, 917
BlnI CCTAGG 1 cut(s) 971
BlsI GCNGC 3 cut(s) 748, 767, 918
Bme1390I CCNGG 1 cut(s) 829
BmeT110I CYCGRG 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 829
BmtI GCTAGC 1 cut(s) 740
BoxI GACNNNNGTC 2 cut(s) 14, 44
BpiI GAAGAC 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 244
Bpu10I CCTNAGC 1 cut(s) 312
BsaI GGTCTC 4 cut(s) 2, 119, 585, 895
BsaJI CCNNGG 4 cut(s) 120, 227, 416, 971
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 700
Bse118I RCCGGY 1 cut(s) 740
BseBI CCWGG 1 cut(s) 829
BseDI CCNNGG 4 cut(s) 120, 227, 416, 971
BseGI GGATG 4 cut(s) 276, 669, 673, 940
BseLI CCNNNNNNNGG 2 cut(s) 267, 700
BseMII CTCAG 3 cut(s) 303, 309, 372
BseRI GAGGAG 2 cut(s) 874, 913
BseSI GKGCMC 1 cut(s) 683
BseXI GCAGC 3 cut(s) 733, 777, 928
BseYI CCCAGC 1 cut(s) 510
Bsh1236I CGCG 2 cut(s) 357, 454
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 4 cut(s) 279, 672, 717, 819
BsiEI CGRYCG 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 406
BsiSI CCGG 2 cut(s) 113, 741
BslFI GGGAC 2 cut(s) 253, 464
BslI CCNNNNNNNGG 2 cut(s) 267, 700
BsmAI GTCTC 5 cut(s) 2, 32, 119, 585, 895
BsmFI GGGAC 2 cut(s) 253, 464
BsnI GGCC 4 cut(s) 279, 672, 717, 819
Bso31I GGTCTC 4 cut(s) 2, 119, 585, 895
BsoBI CYCGRG 1 cut(s) 406
Bsp1286I GDGCHC 1 cut(s) 683
Bsp1407I TGTACA 1 cut(s) 1000
Bsp143I GATC 6 cut(s) 352, 711, 757, 881, 941, 1011
Bsp68I TCGCGA 1 cut(s) 357
BspACI CCGC 4 cut(s) 236, 333, 350, 545
BspANI GGCC 4 cut(s) 279, 672, 717, 819
BspCNI CTCAG 3 cut(s) 304, 308, 373
BspFNI CGCG 2 cut(s) 357, 454
BspLI GGNNCC 1 cut(s) 259
BspOI GCTAGC 1 cut(s) 740
BspPI GGATC 2 cut(s) 360, 889
BspTNI GGTCTC 4 cut(s) 2, 119, 585, 895
BsrBI CCGCTC 1 cut(s) 547
BsrFI RCCGGY 1 cut(s) 740
BsrGI TGTACA 1 cut(s) 1000
BssAI RCCGGY 1 cut(s) 740
BssECI CCNNGG 4 cut(s) 120, 227, 416, 971
BssMI GATC 6 cut(s) 352, 711, 757, 881, 941, 1011
BssSI CACGAG 1 cut(s) 876
BssT1I CCWWGG 2 cut(s) 227, 971
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 829
Bst4CI ACNGT 2 cut(s) 808, 856
Bst6I CTCTTC 1 cut(s) 193
BstAUI TGTACA 1 cut(s) 1000
BstC8I GCNNGC 3 cut(s) 632, 738, 742
BstDEI CTNAG 4 cut(s) 295, 312, 381, 1015
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 4 cut(s) 276, 669, 673, 940
BstFNI CGCG 2 cut(s) 357, 454
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 3 cut(s) 456, 746, 970
BstKTI GATC 6 cut(s) 355, 714, 760, 884, 944, 1014
BstMAI GTCTC 5 cut(s) 2, 32, 119, 585, 895
BstMBI GATC 6 cut(s) 352, 711, 757, 881, 941, 1011
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 6 cut(s) 242, 678, 714, 746, 762, 771
BstNI CCWGG 1 cut(s) 829
BstNSI RCATGY 2 cut(s) 634, 778
BstPAI GACNNNNGTC 2 cut(s) 14, 44
BstSCI CCNGG 1 cut(s) 827
BstSLI GKGCMC 1 cut(s) 683
BstUI CGCG 2 cut(s) 357, 454
BstV1I GCAGC 3 cut(s) 733, 777, 928
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 2 cut(s) 881, 1011
BstYI RGATCY 2 cut(s) 881, 1011
BsuRI GGCC 4 cut(s) 279, 672, 717, 819
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 4 cut(s) 276, 669, 673, 940
BtuMI TCGCGA 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 632, 738, 742
CfoI GCGC 3 cut(s) 456, 746, 970
Cfr10I RCCGGY 1 cut(s) 740
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 2 cut(s) 509, 524
Csp6I GTAC 2 cut(s) 413, 1001
CviAII CATG 4 cut(s) 631, 709, 775, 965
CviQI GTAC 2 cut(s) 413, 1001
DdeI CTNAG 4 cut(s) 295, 312, 381, 1015
DpnI GATC 6 cut(s) 354, 713, 759, 883, 943, 1013
DpnII GATC 6 cut(s) 352, 711, 757, 881, 941, 1011
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 365
Eco130I CCWWGG 2 cut(s) 227, 971
Eco31I GGTCTC 4 cut(s) 2, 119, 585, 895
Eco57I CTGAAG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 406
EcoRI GAATTC 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 827
EcoT14I CCWWGG 2 cut(s) 227, 971
ErhI CCWWGG 2 cut(s) 227, 971
FaeI CATG 4 cut(s) 634, 712, 778, 968
FaqI GGGAC 2 cut(s) 253, 464
FatI CATG 4 cut(s) 630, 708, 774, 964
FauI CCCGC 2 cut(s) 229, 340
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 2 cut(s) 212, 284
Fnu4HI GCNGC 3 cut(s) 747, 766, 917
FokI GGATG 4 cut(s) 283, 676, 680, 947
Fsp4HI GCNGC 3 cut(s) 747, 766, 917
FspBI CTAG 2 cut(s) 737, 972
GlaI GCGC 3 cut(s) 455, 745, 969
GluI GCNGC 3 cut(s) 747, 766, 917
GsaI CCCAGC 1 cut(s) 514
GsuI CTGGAG 1 cut(s) 244
HaeII RGCGCY 1 cut(s) 747
HaeIII GGCC 4 cut(s) 279, 672, 717, 819
HapII CCGG 2 cut(s) 113, 741
HgaI GACGC 2 cut(s) 509, 524
HhaI GCGC 3 cut(s) 456, 746, 970
Hin1II CATG 4 cut(s) 634, 712, 778, 968
Hin6I GCGC 3 cut(s) 454, 744, 968
HinP1I GCGC 3 cut(s) 454, 744, 968
HincII GTYRAC 4 cut(s) 103, 524, 619, 724
HindII GTYRAC 4 cut(s) 103, 524, 619, 724
HinfI GANTC 4 cut(s) 203, 398, 625, 729
HpaI GTTAAC 1 cut(s) 724
HpaII CCGG 2 cut(s) 113, 741
HphI GGTGA 1 cut(s) 868
Hpy166II GTNNAC 9 cut(s) 103, 213, 285, 329, 524, 619, 724, 984, 1003
Hpy188I TCNGA 7 cut(s) 54, 368, 570, 815, 927, 946, 1018
Hpy188III TCNNGA 4 cut(s) 261, 356, 408, 470
Hpy8I GTNNAC 9 cut(s) 103, 213, 285, 329, 524, 619, 724, 984, 1003
Hpy99I CGWCG 5 cut(s) 20, 50, 446, 812, 815
HpyAV CCTTC 4 cut(s) 314, 492, 580, 807
HpyCH4III ACNGT 2 cut(s) 808, 856
HpyCH4IV ACGT 3 cut(s) 15, 45, 105
HpyCH4V TGCA 3 cut(s) 657, 916, 953
HpyF10VI GCNNNNNNNGC 6 cut(s) 242, 678, 714, 746, 762, 771
HpyF3I CTNAG 4 cut(s) 295, 312, 381, 1015
HpySE526I ACGT 3 cut(s) 15, 45, 105
Hsp92II CATG 4 cut(s) 634, 712, 778, 968
HspAI GCGC 3 cut(s) 454, 744, 968
KroI GCCGGC 1 cut(s) 740
KroNI GCCGGC 1 cut(s) 742
KspAI GTTAAC 1 cut(s) 724
Kzo9I GATC 6 cut(s) 352, 711, 757, 881, 941, 1011
LmnI GCTCC 3 cut(s) 146, 263, 472
Lsp1109I GCAGC 3 cut(s) 733, 777, 928
MaeI CTAG 2 cut(s) 737, 972
MaeII ACGT 3 cut(s) 15, 45, 105
MaeIII GTNAC 6 cut(s) 389, 434, 500, 599, 777, 802
MalI GATC 6 cut(s) 354, 713, 759, 883, 943, 1013
MbiI CCGCTC 1 cut(s) 547
MboI GATC 6 cut(s) 352, 711, 757, 881, 941, 1011
MboII GAAGA 6 cut(s) 180, 477, 480, 828, 953, 988
MfeI CAATTG 1 cut(s) 698
MflI RGATCY 2 cut(s) 881, 1011
MhlI GDGCHC 1 cut(s) 683
MluCI AATT 4 cut(s) 182, 428, 473, 698
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 3 cut(s) 77, 548, 793
MroNI GCCGGC 1 cut(s) 740
MseI TTAA 1 cut(s) 723
MspI CCGG 2 cut(s) 113, 741
MspR9I CCNGG 1 cut(s) 829
MunI CAATTG 1 cut(s) 698
MvaI CCWGG 1 cut(s) 829
MvnI CGCG 2 cut(s) 357, 454
MwoI GCNNNNNNNGC 6 cut(s) 242, 678, 714, 746, 762, 771
NaeI GCCGGC 1 cut(s) 742
NdeI CATATG 1 cut(s) 154
NdeII GATC 6 cut(s) 352, 711, 757, 881, 941, 1011
NgoMIV GCCGGC 1 cut(s) 740
NheI GCTAGC 1 cut(s) 736
NlaIII CATG 4 cut(s) 634, 712, 778, 968
NlaIV GGNNCC 1 cut(s) 259
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 2 cut(s) 599, 777
NruI TCGCGA 1 cut(s) 357
NspI RCATGY 2 cut(s) 634, 778
PaeI GCATGC 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 742
PfeI GAWTC 3 cut(s) 398, 625, 729
PflMI CCANNNNNTGG 1 cut(s) 267
PfoI TCCNGGA 1 cut(s) 827
PkrI GCNGC 3 cut(s) 748, 767, 918
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PshAI GACNNNNGTC 2 cut(s) 14, 44
Psp6I CCWGG 1 cut(s) 827
PspFI CCCAGC 1 cut(s) 510
PspGI CCWGG 1 cut(s) 827
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 278
PsuI RGATCY 2 cut(s) 881, 1011
RruI TCGCGA 1 cut(s) 357
RsaI GTAC 2 cut(s) 414, 1002
RsaNI GTAC 2 cut(s) 413, 1001
SaqAI TTAA 1 cut(s) 723
SatI GCNGC 3 cut(s) 747, 766, 917
Sau3AI GATC 6 cut(s) 352, 711, 757, 881, 941, 1011
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 829
SduI GDGCHC 1 cut(s) 683
SphI GCATGC 1 cut(s) 634
Sse9I AATT 4 cut(s) 182, 428, 473, 698
SsiI CCGC 4 cut(s) 236, 333, 350, 545
SspMI CTAG 2 cut(s) 737, 972
StyD4I CCNGG 1 cut(s) 827
StyI CCWWGG 2 cut(s) 227, 971
TaaI ACNGT 2 cut(s) 808, 856
TaiI ACGT 3 cut(s) 18, 48, 108
TaqI TCGA 2 cut(s) 195, 584
TaqII GACCGA 1 cut(s) 181
TasI AATT 4 cut(s) 182, 428, 473, 698
TatI WGTACW 1 cut(s) 1000
TfiI GAWTC 3 cut(s) 398, 625, 729
Tru1I TTAA 1 cut(s) 723
Tru9I TTAA 1 cut(s) 723
TseFI GTSAC 2 cut(s) 599, 777
TseI GCWGC 3 cut(s) 746, 765, 916
Tsp45I GTSAC 2 cut(s) 599, 777
TspDTI ATGAA 3 cut(s) 17, 911, 953
TspGWI ACGGA 6 cut(s) 50, 133, 137, 572, 790, 829
Van91I CCANNNNNTGG 1 cut(s) 267
XapI RAATTY 2 cut(s) 182, 473
XceI RCATGY 2 cut(s) 634, 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XmaJI CCTAGG 1 cut(s) 971
XmiI GTMKAC 2 cut(s) 212, 284
XspI CTAG 2 cut(s) 737, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.