Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

70223335 .. 70224373

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG397600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCAGCGAGGGCATTTCACTCCCACCTCTTAATTTCTGTCACTTTTTCTATTCGATTGTTTGGACATAAGTCTTGCATTGGTTCTTATATCAACTTGTTGTGTATGATAGAGTTCCAGGAAGTCTCGGTTTGGGAAAGCATGGTGGGGAGAGGTTTCTTGCCTTGTGGATCCGGTATTGTGGTGAGGAGACCATTAGTGTTGCAGCTTCATCGGATAGTGGATAGGCGATCTGAATATGCAGAGTTTCTTCATGCGCCTAGGAAGAAGTTTACTGATTTTGCTTCTGTACACAAGGAGATCTCAGATGAGACTGATCGCATAATTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

110

Amino Acids

12.58

Weight (kDa)

8.99

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	43 - 108	1e-07	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	165, 178
AfaI	GTAC	1 cut(s)	291
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw26I	GTCTC	3 cut(s)	130, 184, 305
AlwI	GGATC	2 cut(s)	165, 178
ApeKI	GCWGC	2 cut(s)	5, 205
AspA2I	CCTAGG	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	196
AvrII	CCTAGG	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	17, 217
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	130, 184, 305
BfaI	CTAG	1 cut(s)	261
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	2 cut(s)	6, 206
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	2 cut(s)	7, 207
Bme1390I	CCNGG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	119
BoxI	GACNNNNGTC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	17, 217
BsiSI	CCGG	1 cut(s)	174
BsmAI	GTCTC	3 cut(s)	130, 184, 305
Bso31I	GGTCTC	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	4 cut(s)	170, 230, 300, 316
BspCNI	CTCAG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	2 cut(s)	165, 178
BspTNI	GGTCTC	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	4 cut(s)	170, 230, 300, 316
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	173, 233, 303, 319
BstMAI	GTCTC	3 cut(s)	130, 184, 305
BstMBI	GATC	4 cut(s)	170, 230, 300, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	119
BstPAI	GACNNNNGTC	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	17, 217
BstX2I	RGATCY	2 cut(s)	170, 300
BstYI	RGATCY	2 cut(s)	170, 300
CfoI	GCGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	2 cut(s)	142, 254
CviJI	RGCY	1 cut(s)	208
CviKI_1	RGCY	1 cut(s)	208
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	4 cut(s)	172, 232, 302, 318
DpnII	GATC	4 cut(s)	170, 230, 300, 316
Eco130I	CCWWGG	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	145, 257
FaiI	YATR	7 cut(s)	69, 90, 107, 143, 240, 255, 323
FatI	CATG	2 cut(s)	141, 253
Fnu4HI	GCNGC	2 cut(s)	6, 206
Fsp4HI	GCNGC	2 cut(s)	6, 206
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	2 cut(s)	6, 206
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	145, 257
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	273, 292
Hpy188I	TCNGA	3 cut(s)	216, 235, 307
Hpy8I	GTNNAC	2 cut(s)	273, 292
HpyCH4V	TGCA	3 cut(s)	78, 205, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	304
Hsp92II	CATG	2 cut(s)	145, 257
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	4 cut(s)	170, 230, 300, 316
LpnPI	CCDG	3 cut(s)	104, 131, 187
Lsp1109I	GCAGC	2 cut(s)	17, 217
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	4 cut(s)	172, 232, 302, 318
MboI	GATC	4 cut(s)	170, 230, 300, 316
MboII	GAAGA	2 cut(s)	242, 277
MflI	RGATCY	2 cut(s)	170, 300
MluCI	AATT	2 cut(s)	33, 324
MnlI	CCTC	4 cut(s)	3, 38, 146, 180
MseI	TTAA	1 cut(s)	32
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	170, 230, 300, 316
NlaIII	CATG	2 cut(s)	145, 257
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	7, 207
PshAI	GACNNNNGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	170, 300
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	6, 206
Sau3AI	GATC	4 cut(s)	170, 230, 300, 316
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	3 cut(s)	30, 157, 210
Sse9I	AATT	2 cut(s)	33, 324
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	260
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	33, 324
TatI	WGTACW	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	5, 205
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	200, 242
XmaJI	CCTAGG	1 cut(s)	260
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.