Rh1AG400300
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000383
Physical Location & Seq
Reverse (-)
62712765 .. 62719854
7090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG400300.1

Sequence Viewer

Length: 2868 bp
ATGATGGGGTTCACAGGGAAAGCCTTGATGTCAATCAAGGCCTCGTTCAGTAACGTAGCCAATGTTTTACTGGACTGGAATGACGCTCATGACGAAGATTTCTGTTCTTGGCGTGGAGTTTTCTGTGACAATGTCAGCCTCTCTGTGGCCTCCTTGAATTTGTCCAGCTTGAATCTGGGCGGGGAGATTTCGCCAGCCCTTGGAGATTTGGGGAACCTGGAATCCATAGACTTGCAGGGGAATAAGCTAACTGGTCAAATCCCGGATGAGATTGGCAGCTGTTCTTCTCTTATATATCTGGATTTGTCTGACAATAATCTGTCTGGAGACATACCCTTCTCGGTTTCAAAGCTTAAGAAGCTTGAGGTTTTGAATTTGAAGAACAATCAGTTGACTGGTCCTATGCCTACGACTCTTACCCAAATTCCAAACCTTAAAACTCTTGATCTTGCTCGGAACCAGCTCACTGGTGAGATACCAAGGCTAATATATTGGAATGAAGTTTTGCAGTACCTCGGATTGCGAGGCAACTCTTTGACTGGAGCACTGTCCCCTGATATGTGTCAATTAACTGGTCTGTGGTACTTTGATGTTAGAGGCAATAACCTGACTGGCCCGATCCCCGACAACATTGGCAACTGTACAAGCTTTGAGATCCTGGACATATCATACAATCAGATCACTGGTGGGATTCCATATAACATTGGATTTTTACAAGTGGCTACCCTGTCGCTACAAGGGAATAGACTGACTGGAAAGATTCCTGAGGTTATTGGTTTAATGCAGGCTCTTGCTGTTTTGGATTTAAGTGAGAATGAACTTGTAGGGCCAATTCCACCGATACTAGGCAATTTATCATACACTGGGAAACTATACCTGCATGGTAACAAGTTGACTGGGACAATTCCTCCTGAACTTGGCAATATGTCAAAGCTTAGCTATTTGCAATTAAATGACAACAATCTGGTTGGTAGAATTCCTGGTGAGCTTGGGAAGCTGAACCAGTTGTTTGAATTGAATCTTGCTAACAATGATCTGGAAGGTCCCATCCCACATGACATTGGTTCCTGCACTGCCTTGAATCAATTCAACGTTCATGGAAACCGCTTGACAGGATCCATTCCTTTAGCATTGAGAAATCTGCAGAGCTTGACCTATCTGAATTTGTCAGCAAATGCCTTCAGTGGTAGAATTAATCTTGAGTTGGGACATATCATCAATCTTGACACTTTGGATTTGTCCAGCAACAATTTCTCTGGCCCTGTTCCTGCTTCTGTTGGCAATCTTGAGCACCTCCTGACTTTGAATTTTAGTGGGAATCATCTTGATGGTCCCTTGCCTGCAGAATTTGGGGACCTCAGGAGTGTTCAAATCATTGATATGTCATTCAACAATCTCTCTGGGAGCATTCCGTCAGAATTGGGTCAGTTGCAAAACCTTGCGGCATTGTTGCTTAATAACAACAACTTGCGTGGAATGATACCTGATCAGCTAACCAACTGTTTCAGCCTTGAGACCTTGAATTTTTCATACAACAATCTGTCAGGCATTGTACCTCCCATGAGGAACTTTTCACGTTTTTCACCAGACAGCTTCATTGCAAACCCATTGTTGTGCAGTGATTGGTTGGGATCGATATGCAGACCCGTTGCCCCCAAGTCCAGGGCTGTATTCTCCCGTGCAGCAGTTGTCTGTATGGCGTTAGGCTTCATCACATTATTATCCATGGTAATAGTTGCGATTTACAAGTCCAACCAACCAAAGCAGTTAATGATGGGATCTACCAAGAATGGACAAGGTCCTGCTAAACTTGTAATCCTTCACATGGATATGGCTATACACAGCTTTGATGATATAATGAGAATCACTGAGAATCTAAATGAGAAGTATATCATAGGGTATGGTGCTTCTAGCACAGTGTACAAGTGTGTACTGAAAAATTCCCGACCAATGGCAATCAAGCGACTCTACAACCGGTATCCACACAACTGGAGGGAGTTTGAGACGGAACTTGAAACCATTGGCAGTATCAAGCATAGAAATTTAGTCAGTTTGCATGGGTATTCACTGTCTCCCTTGGGCAATCTCCTCTTCTATGACTACATGGAGAACGGGTCTCTGTGGGATATGCTTCATGGACCATCGAAAAAGGTTAAACTTGATTGGGAAACACGTTTGAAAATAGCAGTTGGAGCAGCTCAAGGACTTGCTTATCTTCACCATGACTGCAACCCCCGCATTATTCACAGGGATGTGAAATCCTCTAATATCCTGCTGGATGAGAATTTTGAAGCTCATCTCTCTGATTTTGGAATTGCAAAATCCATCCCCAGTGCAGATACCCATGCATCGACTTATGTTCTGGGAACAATTGGTTACATTGATCCAGAATATGCTAGGACTTCTCGGCTCAATGAAAAATCTGATGTATATAGCTTTGGCATTGTGCTTCTTGAGCTACTGACTGGAAAGAAGGCTGTGGACAAGGAGTCTAACTTGCATCATCTGATATTGTCCAAGGCAGATAACAATACTGTAATGGAGACTGTTGACCCTGAAGTTTCTGTCACCTGCATGGATATAACTCATGTCAAGAAAACTTTTCAACTCGCCCTGCTGTGCACCAAGCGAAACCCCACTGAGAGGCCAACAATGCATGAAGTTGCTAGGGTTTTGGTCTCCCTCCTACCTTTACATCACTCAAAGAAGCCTCTTTCAAATGGTATCGACTATGATAAGTTTGCGGTTAACAAGGAACAACAACAACCAAAAGTGCAACAGCAGAAGCCTGTTCGGCAAGAAAGTCATTCATCTGATGCTCAATGGTTTCTTCGGTTTGGTGAGGTTATATCCAAGAACACACTCTAA

Protein Analysis

955

Amino Acids

105.26

Weight (kDa)

6.1

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 7 - 43 4.2e-09 Leucine rich repeat N-terminal domain
LRR_4 PF12799 96 - 132 1.3e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 116 - 155 2.1e-06 Leucine rich repeat
LRR_8 PF13855 290 - 346 2.6e-06 Leucine rich repeat
LRR_14 PF23598 305 - 415 3.7e-08 Leucine-rich repeat region
LRR_8 PF13855 407 - 466 1.3e-07 Leucine rich repeat
LRR_14 PF23598 425 - 509 2.7e-07 Leucine-rich repeat region
Pkinase PF00069 628 - 889 9e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 631 - 891 1.7e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2579
Acc36I ACCTGC 2 cut(s) 885, 2579
AccB7I CCANNNNNTGG 1 cut(s) 200
AciI CCGC 5 cut(s) 180, 1105, 1442, 2236, 2744
AclI AACGTT 1 cut(s) 1092
AclWI GGATC 7 cut(s) 613, 649, 1110, 1123, 1639, 1786, 2378
AcuI CTGAAG 2 cut(s) 1165, 2577
AfaI GTAC 6 cut(s) 512, 584, 643, 1554, 1922, 1932
AfiI CCNNNNNNNGG 8 cut(s) 145, 200, 845, 917, 1662, 1825, 1951, 2643
AflII CTTAAG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 2171
AgeI ACCGGT 1 cut(s) 1974
AhdI GACNNNNNGTC 1 cut(s) 2488
AjnI CCWGG 4 cut(s) 216, 657, 979, 1661
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
Alw21I GWGCWC 3 cut(s) 547, 1293, 2624
Alw26I GTCTC 7 cut(s) 321, 1508, 1997, 2076, 2121, 2537, 2683
Alw44I GTGCAC 1 cut(s) 2620
AlwI GGATC 7 cut(s) 613, 649, 1110, 1123, 1639, 1786, 2378
AoxI GGCC 6 cut(s) 39, 147, 613, 827, 1258, 2645
ApaLI GTGCAC 1 cut(s) 2620
ApeKI GCWGC 3 cut(s) 276, 1682, 2195
AseI ATTAAT 1 cut(s) 1194
AsiGI ACCGGT 1 cut(s) 1974
Asp700I GAANNNNTTC 1 cut(s) 1085
AspS9I GGNCC 9 cut(s) 398, 614, 827, 1043, 1259, 1331, 1354, 1799, 2138
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 6 cut(s) 482, 995, 1575, 2210, 2560, 2852
AvaII GGWCC 6 cut(s) 398, 1043, 1331, 1354, 1799, 2138
AxyI CCTNAGG 2 cut(s) 765, 1358
BaeGI GKGCMC 1 cut(s) 2624
BamHI GGATCC 1 cut(s) 1115
Bbv12I GWGCWC 3 cut(s) 547, 1293, 2624
BbvI GCAGC 3 cut(s) 288, 1694, 2207
BccI CCATC 5 cut(s) 1055, 1322, 1768, 2149, 2333
BciT130I CCWGG 4 cut(s) 218, 659, 981, 1663
BciVI GTATCC 1 cut(s) 1989
BclI TGATCA 1 cut(s) 1486
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 7 cut(s) 321, 1508, 1997, 2076, 2121, 2537, 2683
BfaI CTAG 4 cut(s) 845, 1911, 2397, 2667
BfmI CTRYAG 2 cut(s) 1142, 1341
BfrI CTTAAG 1 cut(s) 353
BfuAI ACCTGC 2 cut(s) 885, 2579
BfuI GTATCC 1 cut(s) 1989
BglI GCCNNNNNGGC 1 cut(s) 2794
BisI GCNGC 4 cut(s) 277, 1443, 1683, 2196
BlpI GCTNAGC 1 cut(s) 935
BlsI GCNGC 4 cut(s) 278, 1444, 1684, 2197
Bme1390I CCNGG 5 cut(s) 218, 263, 659, 981, 1663
Bme18I GGWCC 6 cut(s) 398, 1043, 1331, 1354, 1799, 2138
BmeRI GACNNNNNGTC 1 cut(s) 2488
BmgT120I GGNCC 9 cut(s) 398, 614, 827, 1043, 1259, 1331, 1354, 1799, 2138
BmiI GGNNCC 7 cut(s) 215, 458, 1045, 1066, 1117, 1333, 1355
BmrFI CCNGG 5 cut(s) 218, 263, 659, 981, 1663
BmrI ACTGGG 3 cut(s) 873, 906, 2325
BmsI GCATC 3 cut(s) 2357, 2509, 2806
BmuI ACTGGG 3 cut(s) 873, 906, 2325
BpmI CTGGAG 3 cut(s) 345, 561, 2011
Bpu1102I GCTNAGC 1 cut(s) 935
BpuEI CTTGAG 6 cut(s) 383, 1220, 1307, 1532, 2184, 2474
BpuMI CCSGG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 1634
BsaBI GATNNNNATC 1 cut(s) 32
BsaI GGTCTC 3 cut(s) 1508, 2121, 2683
BsaJI CCNNGG 7 cut(s) 199, 479, 514, 1662, 1725, 2076, 2517
BsaWI WCCGGW 1 cut(s) 1974
BsaXI ACNNNNNCTCC 4 cut(s) 892, 922, 2099, 2129
Bsc4I CCNNNNNNNGG 8 cut(s) 145, 200, 845, 917, 1662, 1825, 1951, 2643
Bse118I RCCGGY 1 cut(s) 1974
Bse21I CCTNAGG 2 cut(s) 765, 1358
Bse3DI GCAATG 1 cut(s) 1596
Bse8I GATNNNNATC 1 cut(s) 32
BseBI CCWGG 4 cut(s) 218, 659, 981, 1663
BseCI ATCGAT 1 cut(s) 1634
BseDI CCNNGG 7 cut(s) 199, 479, 514, 1662, 1725, 2076, 2517
BseGI GGATG 5 cut(s) 271, 1047, 2257, 2284, 2325
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 8 cut(s) 145, 200, 845, 917, 1662, 1825, 1951, 2643
BseMI GCAATG 1 cut(s) 1596
BseMII CTCAG 4 cut(s) 756, 1372, 1860, 2631
BseRI GAGGAG 1 cut(s) 2078
BseSI GKGCMC 1 cut(s) 2624
BseXI GCAGC 3 cut(s) 288, 1694, 2207
BsgI GTGCAG 4 cut(s) 1054, 1636, 1701, 2355
BshFI GGCC 6 cut(s) 41, 149, 615, 829, 1260, 2647
BshTI ACCGGT 1 cut(s) 1974
BshVI ATCGAT 1 cut(s) 1634
BsiHKAI GWGCWC 3 cut(s) 547, 1293, 2624
BsiSI CCGG 2 cut(s) 263, 1975
BslFI GGGAC 6 cut(s) 535, 913, 1029, 1221, 1317, 1367
BslI CCNNNNNNNGG 8 cut(s) 145, 200, 845, 917, 1662, 1825, 1951, 2643
BsmAI GTCTC 7 cut(s) 321, 1508, 1997, 2076, 2121, 2537, 2683
BsmBI CGTCTC 1 cut(s) 1997
BsmFI GGGAC 6 cut(s) 535, 913, 1029, 1221, 1317, 1367
BsmI GAATGC 1 cut(s) 1407
BsnI GGCC 6 cut(s) 41, 149, 615, 829, 1260, 2647
Bso31I GGTCTC 3 cut(s) 1508, 2121, 2683
Bsp1286I GDGCHC 3 cut(s) 547, 1293, 2624
Bsp1407I TGTACA 2 cut(s) 641, 1920
Bsp1720I GCTNAGC 1 cut(s) 935
Bsp19I CCATGG 1 cut(s) 1725
BspACI CCGC 5 cut(s) 180, 1105, 1442, 2236, 2744
BspANI GGCC 6 cut(s) 41, 149, 615, 829, 1260, 2647
BspCNI CTCAG 4 cut(s) 757, 1371, 1861, 2632
BspDI ATCGAT 1 cut(s) 1634
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 7 cut(s) 215, 458, 1045, 1066, 1117, 1333, 1355
BspMAI CTGCAG 2 cut(s) 1146, 1345
BspMI ACCTGC 2 cut(s) 885, 2579
BspPI GGATC 7 cut(s) 613, 649, 1110, 1123, 1639, 1786, 2378
BspTI CTTAAG 1 cut(s) 353
BspTNI GGTCTC 3 cut(s) 1508, 2121, 2683
BsrDI GCAATG 1 cut(s) 1596
BsrFI RCCGGY 1 cut(s) 1974
BsrGI TGTACA 2 cut(s) 641, 1920
BssAI RCCGGY 1 cut(s) 1974
BssECI CCNNGG 7 cut(s) 199, 479, 514, 1662, 1725, 2076, 2517
BssT1I CCWWGG 5 cut(s) 199, 479, 1725, 2076, 2517
Bst2UI CCWGG 4 cut(s) 218, 659, 981, 1663
Bst4CI ACNGT 7 cut(s) 549, 641, 1502, 1918, 2070, 2536, 2548
Bst6I CTCTTC 1 cut(s) 2096
BstAFI CTTAAG 1 cut(s) 353
BstAUI TGTACA 2 cut(s) 641, 1920
BstC8I GCNNGC 3 cut(s) 195, 786, 1341
BstDEI CTNAG 5 cut(s) 765, 935, 1358, 1869, 2640
BstDSI CCRYGG 1 cut(s) 1725
BstF5I GGATG 5 cut(s) 271, 1047, 2257, 2284, 2325
BstMAI GTCTC 7 cut(s) 321, 1508, 1997, 2076, 2121, 2537, 2683
BstMWI GCNNNNNNNGC 7 cut(s) 358, 994, 2192, 2235, 2455, 2653, 2794
BstNI CCWGG 4 cut(s) 218, 659, 981, 1663
BstSCI CCNGG 5 cut(s) 216, 261, 657, 979, 1661
BstSFI CTRYAG 2 cut(s) 1142, 1341
BstSLI GKGCMC 1 cut(s) 2624
BstV1I GCAGC 3 cut(s) 288, 1694, 2207
BstX2I RGATCY 3 cut(s) 654, 1115, 1778
BstXI CCANNNNNNTGG 2 cut(s) 467, 1989
BstYI RGATCY 3 cut(s) 654, 1115, 1778
Bsu15I ATCGAT 1 cut(s) 1634
Bsu36I CCTNAGG 2 cut(s) 765, 1358
BsuI GTATCC 1 cut(s) 1989
BsuRI GGCC 6 cut(s) 41, 149, 615, 829, 1260, 2647
BsuTUI ATCGAT 1 cut(s) 1634
BtgI CCRYGG 1 cut(s) 1725
BtsCI GGATG 5 cut(s) 271, 1047, 2257, 2284, 2325
BtsI GCAGTG 2 cut(s) 1071, 1624
BveI ACCTGC 2 cut(s) 885, 2579
Cac8I GCNNGC 3 cut(s) 195, 786, 1341
CciI TCATGA 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 1974
Cfr13I GGNCC 9 cut(s) 398, 614, 827, 1043, 1259, 1331, 1354, 1799, 2138
ClaI ATCGAT 1 cut(s) 1634
CseI GACGC 1 cut(s) 92
Csp6I GTAC 6 cut(s) 511, 583, 642, 1553, 1921, 1931
CspAI ACCGGT 1 cut(s) 1974
CspCI CAANNNNNGTGG 2 cut(s) 1453, 1488
CviQI GTAC 6 cut(s) 511, 583, 642, 1553, 1921, 1931
DdeI CTNAG 5 cut(s) 765, 935, 1358, 1869, 2640
DriI GACNNNNNGTC 1 cut(s) 2488
Eam1104I CTCTTC 1 cut(s) 2096
Eam1105I GACNNNNNGTC 1 cut(s) 2488
EarI CTCTTC 1 cut(s) 2096
Eco130I CCWWGG 5 cut(s) 199, 479, 1725, 2076, 2517
Eco147I AGGCCT 1 cut(s) 41
Eco31I GGTCTC 3 cut(s) 1508, 2121, 2683
Eco47I GGWCC 6 cut(s) 398, 1043, 1331, 1354, 1799, 2138
Eco57I CTGAAG 2 cut(s) 1165, 2577
Eco81I CCTNAGG 2 cut(s) 765, 1358
EcoO109I RGGNCCY 3 cut(s) 1043, 1354, 1799
EcoRI GAATTC 1 cut(s) 975
EcoRII CCWGG 4 cut(s) 216, 657, 979, 1661
EcoT14I CCWWGG 5 cut(s) 199, 479, 1725, 2076, 2517
EcoT22I ATGCAT 2 cut(s) 2350, 2658
ErhI CCWWGG 5 cut(s) 199, 479, 1725, 2076, 2517
Esp3I CGTCTC 1 cut(s) 1997
FaqI GGGAC 6 cut(s) 535, 913, 1029, 1221, 1317, 1367
FauI CCCGC 2 cut(s) 173, 2243
FbaI TGATCA 1 cut(s) 1486
Fnu4HI GCNGC 4 cut(s) 277, 1443, 1683, 2196
FokI GGATG 5 cut(s) 278, 1034, 2264, 2291, 2312
Fsp4HI GCNGC 4 cut(s) 277, 1443, 1683, 2196
FspBI CTAG 4 cut(s) 845, 1911, 2397, 2667
GluI GCNGC 4 cut(s) 277, 1443, 1683, 2196
GsuI CTGGAG 3 cut(s) 345, 561, 2011
HaeIII GGCC 6 cut(s) 41, 149, 615, 829, 1260, 2647
HapII CCGG 2 cut(s) 263, 1975
HgaI GACGC 1 cut(s) 92
HincII GTYRAC 4 cut(s) 393, 894, 2551, 2749
HindII GTYRAC 4 cut(s) 393, 894, 2551, 2749
HindIII AAGCTT 4 cut(s) 350, 359, 646, 932
HpaI GTTAAC 1 cut(s) 2749
HpaII CCGG 2 cut(s) 263, 1975
HphI GGTGA 6 cut(s) 482, 995, 1575, 2210, 2560, 2852
Hpy166II GTNNAC 9 cut(s) 12, 393, 894, 1921, 1931, 2482, 2551, 2622, 2749
Hpy8I GTNNAC 9 cut(s) 12, 393, 894, 1921, 1931, 2482, 2551, 2622, 2749
HpyAV CCTTC 5 cut(s) 346, 1034, 1189, 1829, 2467
HpyCH4III ACNGT 7 cut(s) 549, 641, 1502, 1918, 2070, 2536, 2548
HpyCH4IV ACGT 4 cut(s) 54, 1092, 1576, 2173
HpyF10VI GCNNNNNNNGC 7 cut(s) 358, 994, 2192, 2235, 2455, 2653, 2794
HpyF3I CTNAG 5 cut(s) 765, 935, 1358, 1869, 2640
HpySE526I ACGT 4 cut(s) 54, 1092, 1576, 2173
Ksp22I TGATCA 1 cut(s) 1486
KspAI GTTAAC 1 cut(s) 2749
LmnI GCTCC 3 cut(s) 542, 1404, 2192
Lsp1109I GCAGC 3 cut(s) 288, 1694, 2207
LweI GCATC 3 cut(s) 2357, 2509, 2806
MaeI CTAG 4 cut(s) 845, 1911, 2397, 2667
MaeII ACGT 4 cut(s) 54, 1092, 1576, 2173
MaeIII GTNAC 5 cut(s) 50, 125, 884, 2375, 2566
MboII GAAGA 6 cut(s) 107, 276, 391, 2083, 2207, 2822
MfeI CAATTG 1 cut(s) 2370
MflI RGATCY 3 cut(s) 654, 1115, 1778
MhlI GDGCHC 3 cut(s) 547, 1293, 2624
MlyI GAGTC 3 cut(s) 406, 1959, 2498
MmeI TCCRAC 2 cut(s) 1776, 2170
Mph1103I ATGCAT 2 cut(s) 2350, 2658
MroXI GAANNNNTTC 1 cut(s) 1085
MslI CAYNNNNRTG 6 cut(s) 1326, 1379, 1612, 1829, 2250, 2573
MspA1I CMGCKG 1 cut(s) 279
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 2 cut(s) 263, 1975
MspR9I CCNGG 5 cut(s) 218, 263, 659, 981, 1663
MunI CAATTG 1 cut(s) 2370
Mva1269I GAATGC 1 cut(s) 1407
MvaI CCWGG 4 cut(s) 218, 659, 981, 1663
MwoI GCNNNNNNNGC 7 cut(s) 358, 994, 2192, 2235, 2455, 2653, 2794
NciI CCSGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 1725
NlaIV GGNNCC 7 cut(s) 215, 458, 1045, 1066, 1117, 1333, 1355
NmeAIII GCCGAG 1 cut(s) 2386
NmuCI GTSAC 2 cut(s) 125, 2566
NsiI ATGCAT 2 cut(s) 2350, 2658
PagI TCATGA 1 cut(s) 88
PaqCI CACCTGC 1 cut(s) 2579
PceI AGGCCT 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 1407
PdmI GAANNNNTTC 1 cut(s) 1085
PfeI GAWTC 9 cut(s) 172, 221, 691, 760, 1018, 1081, 1318, 1863, 1873
PflFI GACNNNGTC 2 cut(s) 131, 1797
PflMI CCANNNNNTGG 1 cut(s) 200
PfoI TCCNGGA 2 cut(s) 261, 657
PinAI ACCGGT 1 cut(s) 1974
PkrI GCNGC 4 cut(s) 278, 1444, 1684, 2197
PleI GAGTC 3 cut(s) 406, 1959, 2497
PpsI GAGTC 3 cut(s) 406, 1959, 2497
PpuMI RGGWCCY 3 cut(s) 1043, 1354, 1799
PshBI ATTAAT 1 cut(s) 1194
Psp1406I AACGTT 1 cut(s) 1092
Psp5II RGGWCCY 3 cut(s) 1043, 1354, 1799
Psp6I CCWGG 4 cut(s) 216, 657, 979, 1661
PspGI CCWGG 4 cut(s) 216, 657, 979, 1661
PspN4I GGNNCC 7 cut(s) 215, 458, 1045, 1066, 1117, 1333, 1355
PspPI GGNCC 9 cut(s) 398, 614, 827, 1043, 1259, 1331, 1354, 1799, 2138
PspPPI RGGWCCY 3 cut(s) 1043, 1354, 1799
PstI CTGCAG 2 cut(s) 1146, 1345
PsuI RGATCY 3 cut(s) 654, 1115, 1778
PsyI GACNNNGTC 2 cut(s) 131, 1797
PvuII CAGCTG 1 cut(s) 279
RsaI GTAC 6 cut(s) 512, 584, 643, 1554, 1922, 1932
RsaNI GTAC 6 cut(s) 511, 583, 642, 1553, 1921, 1931
RseI CAYNNNNRTG 6 cut(s) 1326, 1379, 1612, 1829, 2250, 2573
SatI GCNGC 4 cut(s) 277, 1443, 1683, 2196
Sau96I GGNCC 9 cut(s) 398, 614, 827, 1043, 1259, 1331, 1354, 1799, 2138
SchI GAGTC 3 cut(s) 406, 1959, 2498
ScrFI CCNGG 5 cut(s) 218, 263, 659, 981, 1663
SduI GDGCHC 3 cut(s) 547, 1293, 2624
SfaNI GCATC 3 cut(s) 2357, 2509, 2806
SfcI CTRYAG 2 cut(s) 1142, 1341
SinI GGWCC 6 cut(s) 398, 1043, 1331, 1354, 1799, 2138
SmiMI CAYNNNNRTG 6 cut(s) 1326, 1379, 1612, 1829, 2250, 2573
SmlI CTYRAG 7 cut(s) 353, 362, 1199, 1286, 1511, 2199, 2453
SmoI CTYRAG 7 cut(s) 353, 362, 1199, 1286, 1511, 2199, 2453
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 5 cut(s) 180, 1105, 1442, 2236, 2744
SspMI CTAG 4 cut(s) 845, 1911, 2397, 2667
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 5 cut(s) 216, 261, 657, 979, 1661
StyI CCWWGG 5 cut(s) 199, 479, 1725, 2076, 2517
TaaI ACNGT 7 cut(s) 549, 641, 1502, 1918, 2070, 2536, 2548
TaiI ACGT 4 cut(s) 57, 1095, 1579, 2176
TaqI TCGA 4 cut(s) 1634, 2144, 2351, 2727
TatI WGTACW 3 cut(s) 641, 1920, 1930
TauI GCSGC 1 cut(s) 1445
TfiI GAWTC 9 cut(s) 172, 221, 691, 760, 1018, 1081, 1318, 1863, 1873
TseFI GTSAC 2 cut(s) 125, 2566
TseI GCWGC 3 cut(s) 276, 1682, 2195
Tsp45I GTSAC 2 cut(s) 125, 2566
TspGWI ACGGA 2 cut(s) 1401, 2021
Tth111I GACNNNGTC 2 cut(s) 131, 1797
Van91I CCANNNNNTGG 1 cut(s) 200
Vha464I CTTAAG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 2620
VpaK11BI GGWCC 6 cut(s) 398, 1043, 1331, 1354, 1799, 2138
VspI ATTAAT 1 cut(s) 1194
XcmI CCANNNNNNNNNTGG 2 cut(s) 67, 172
XmnI GAANNNNTTC 1 cut(s) 1085
XspI CTAG 4 cut(s) 845, 1911, 2397, 2667
Zsp2I ATGCAT 2 cut(s) 2350, 2658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.