Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014119.1

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

3507 .. 4203

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014119.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgcgttacctttgtagtttttgccttttggccaaggattatcttttctggtgtttggccagattggagagcttgatcggcctcgttaaccgaatccagctagcctgtaccgctttcggcgattatggcagcgagggcatgtcgctctgggaagctctcccttccgtcaccgttgtcggaggccaggtttttcactcccacctcttaatttctgtcactttttctattcgattgtttggacataagtctcgcattggttcttatatcaacttgttgtgtatgatagagttccaggaagtctcggtttgggaaagcatggtggggagaggtttcttgcctcgtggatccggtattgtggtgaggagaccattagtgttgcagcttcatcggatagtggataggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

134

Amino Acids

15.17

Weight (kDa)

8.99

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	2 cut(s)	339, 352
AcoI	YGGCCR	2 cut(s)	30, 57
AfaI	GTAC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	183, 291
AluBI	AGCT	4 cut(s)	72, 100, 155, 382
AluI	AGCT	4 cut(s)	72, 100, 155, 382
Alw26I	GTCTC	3 cut(s)	252, 304, 358
AlwI	GGATC	2 cut(s)	339, 352
AoxI	GGCC	4 cut(s)	30, 57, 79, 181
ApeKI	GCWGC	2 cut(s)	129, 379
AsuHPI	GGTGA	2 cut(s)	160, 370
AsuNHI	GCTAGC	1 cut(s)	100
BalI	TGGCCA	2 cut(s)	32, 59
BamHI	GGATCC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	141, 391
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	185, 293
BcoDI	GTCTC	3 cut(s)	252, 304, 358
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	2 cut(s)	130, 380
BlsI	GCNGC	2 cut(s)	131, 381
Bme1390I	CCNGG	2 cut(s)	185, 293
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	185, 293
BmtI	GCTAGC	1 cut(s)	104
BoxI	GACNNNNGTC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
BseBI	CCWGG	2 cut(s)	185, 293
BseDI	CCNNGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	376
BseXI	GCAGC	2 cut(s)	141, 391
BshFI	GGCC	4 cut(s)	32, 59, 81, 183
BsiSI	CCGG	1 cut(s)	348
BsmAI	GTCTC	3 cut(s)	252, 304, 358
BsnI	GGCC	4 cut(s)	32, 59, 81, 183
Bso31I	GGTCTC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	75, 344
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	4 cut(s)	32, 59, 81, 183
BspLI	GGNNCC	1 cut(s)	346
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	339, 352
BspTNI	GGTCTC	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	75, 344
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	185, 293
Bst4CI	ACNGT	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	78, 347
BstMAI	GTCTC	3 cut(s)	252, 304, 358
BstMBI	GATC	2 cut(s)	75, 344
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 110, 126, 135
BstNI	CCWGG	2 cut(s)	185, 293
BstNSI	RCATGY	1 cut(s)	142
BstPAI	GACNNNNGTC	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	183, 291
BstV1I	GCAGC	2 cut(s)	141, 391
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	4 cut(s)	32, 59, 81, 183
Cac8I	GCNNGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	139, 316
CviJI	RGCY	9 cut(s)	32, 59, 72, 81, 100, 104, 155, 183, 382
CviKI_1	RGCY	9 cut(s)	32, 59, 72, 81, 100, 104, 155, 183, 382
CviQI	GTAC	1 cut(s)	108
DpnI	GATC	2 cut(s)	77, 346
DpnII	GATC	2 cut(s)	75, 344
EaeI	YGGCCR	2 cut(s)	30, 57
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	183, 291
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	142, 319
FaiI	YATR	6 cut(s)	126, 140, 243, 264, 281, 317
FatI	CATG	2 cut(s)	138, 315
Fnu4HI	GCNGC	2 cut(s)	130, 380
Fsp4HI	GCNGC	2 cut(s)	130, 380
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	2 cut(s)	130, 380
HaeIII	GGCC	4 cut(s)	32, 59, 81, 183
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	2 cut(s)	142, 319
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	93
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	2 cut(s)	160, 370
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	179, 390
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 110, 126, 135
Hsp92II	CATG	2 cut(s)	142, 319
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	75, 344
Lsp1109I	GCAGC	2 cut(s)	141, 391
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	5, 166, 214
MalI	GATC	2 cut(s)	77, 346
MboI	GATC	2 cut(s)	75, 344
MflI	RGATCY	1 cut(s)	344
MlsI	TGGCCA	2 cut(s)	32, 59
MluCI	AATT	1 cut(s)	207
MluNI	TGGCCA	2 cut(s)	32, 59
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	7 cut(s)	92, 127, 173, 212, 320, 348, 354
Mox20I	TGGCCA	2 cut(s)	32, 59
MscI	TGGCCA	2 cut(s)	32, 59
MseI	TTAA	2 cut(s)	87, 206
Msp20I	TGGCCA	2 cut(s)	32, 59
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	185, 293
MvaI	CCWGG	2 cut(s)	185, 293
MwoI	GCNNNNNNNGC	4 cut(s)	78, 110, 126, 135
NdeII	GATC	2 cut(s)	75, 344
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	142, 319
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	2 cut(s)	166, 214
NspI	RCATGY	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	2 cut(s)	131, 381
PshAI	GACNNNNGTC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	183, 291
PspGI	CCWGG	2 cut(s)	183, 291
PspN4I	GGNNCC	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	87, 206
SatI	GCNGC	2 cut(s)	130, 380
Sau3AI	GATC	2 cut(s)	75, 344
ScrFI	CCNGG	2 cut(s)	185, 293
SetI	ASST	9 cut(s)	12, 74, 102, 157, 189, 204, 331, 384, 404
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	183, 291
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	229
TasI	AATT	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	87, 206
Tru9I	TTAA	2 cut(s)	87, 206
TseFI	GTSAC	2 cut(s)	166, 214
TseI	GCWGC	2 cut(s)	129, 379
Tsp45I	GTSAC	2 cut(s)	166, 214
TspDTI	ATGAA	1 cut(s)	374
TspGWI	ACGGA	1 cut(s)	154
XceI	RCATGY	1 cut(s)	142
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.