Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006329.1

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

26380 .. 27534

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006329.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgttgggcctcatcaacgggccgggcttggccggaccgagcccggcccattggaatttgtccagcttgaatcttggcgaagagatttcgccagcccttggagatctgggaaacttggaatccatgaatttatctgacaataatccgtctggagacatacccttctcggtttcaaagcttaagaaccttgaggttttgaatttgaagaacaatcagttgactagtcctatcgctacaactcttacccaaattccaaacctaagaactcttgatctttcttggaaccagctcactggtgacataccaaggctaatatcttggaatgaagttttgcagtacatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

114

Amino Acids

12.35

Weight (kDa)

4.45

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	4 cut(s)	55, 127, 199, 249
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	98
AflII	CTTAAG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	4 cut(s)	70, 174, 199, 205
AhlI	ACTAGT	1 cut(s)	221
AluBI	AGCT	3 cut(s)	66, 178, 289
AluI	AGCT	3 cut(s)	66, 178, 289
Alw26I	GTCTC	1 cut(s)	147
AoxI	GGCC	4 cut(s)	7, 20, 30, 45
ApoI	RAATTY	4 cut(s)	55, 127, 199, 249
AspS9I	GGNCC	4 cut(s)	7, 20, 35, 46
AsuC2I	CCSGG	2 cut(s)	24, 44
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	44
BcnI	CCSGG	2 cut(s)	24, 44
BcoDI	GTCTC	1 cut(s)	147
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	1 cut(s)	222
BfrI	CTTAAG	1 cut(s)	179
BglII	AGATCT	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	24, 44
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	4 cut(s)	7, 20, 35, 46
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	24, 44
BpmI	CTGGAG	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	2 cut(s)	24, 44
BsaJI	CCNNGG	2 cut(s)	97, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	97, 305
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	298
BshFI	GGCC	4 cut(s)	9, 22, 32, 47
BsiSI	CCGG	3 cut(s)	23, 33, 44
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	4 cut(s)	9, 22, 32, 47
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	103, 271
BspANI	GGCC	4 cut(s)	9, 22, 32, 47
BspLI	GGNNCC	1 cut(s)	284
BspTI	CTTAAG	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	97, 305
BssMI	GATC	2 cut(s)	103, 271
BssT1I	CCWWGG	2 cut(s)	97, 305
Bst6I	CTCTTC	1 cut(s)	75
BstAFI	CTTAAG	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	260
BstKTI	GATC	2 cut(s)	106, 274
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	103, 271
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	2 cut(s)	22, 42
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	4 cut(s)	9, 22, 32, 47
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	7, 20, 35, 46
CpoI	CGGWCCG	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	337
CspI	CGGWCCG	1 cut(s)	35
CviAII	CATG	2 cut(s)	124, 340
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	2 cut(s)	105, 273
DpnII	GATC	2 cut(s)	103, 271
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	97, 305
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	35
EcoT14I	CCWWGG	2 cut(s)	97, 305
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	97, 305
FaeI	CATG	2 cut(s)	127, 343
FaiI	YATR	4 cut(s)	125, 158, 302, 341
FatI	CATG	2 cut(s)	123, 339
FriOI	GRGCYC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	4 cut(s)	9, 22, 32, 47
HapII	CCGG	3 cut(s)	23, 33, 44
Hin1II	CATG	2 cut(s)	127, 343
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	70, 119
HpaII	CCGG	3 cut(s)	23, 33, 44
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	150, 269
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	334
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	127, 343
Kzo9I	GATC	2 cut(s)	103, 271
LpnPI	CCDG	9 cut(s)	36, 46, 57, 76, 92, 105, 135, 279, 299
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	105, 273
MboI	GATC	2 cut(s)	103, 271
MboII	GAAGA	2 cut(s)	92, 217
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	4 cut(s)	55, 127, 199, 249
MnlI	CCTC	2 cut(s)	20, 184
MseI	TTAA	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	3 cut(s)	23, 33, 44
MspR9I	CCNGG	2 cut(s)	24, 44
NciI	CCSGG	2 cut(s)	24, 44
NdeII	GATC	2 cut(s)	103, 271
NlaIII	CATG	2 cut(s)	127, 343
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	1 cut(s)	343
PciI	ACATGT	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	70, 119
PflMI	CCANNNNNTGG	1 cut(s)	98
PscI	ACATGT	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	4 cut(s)	7, 20, 35, 46
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
Rsr2I	CGGWCCG	1 cut(s)	35
RsrII	CGGWCCG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	103, 271
Sau96I	GGNCC	4 cut(s)	7, 20, 35, 46
ScrFI	CCNGG	2 cut(s)	24, 44
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	6 cut(s)	68, 180, 189, 195, 261, 291
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	179, 188
SmoI	CTYRAG	2 cut(s)	179, 188
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	4 cut(s)	55, 127, 199, 249
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	22, 42
StyI	CCWWGG	2 cut(s)	97, 305
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	4 cut(s)	55, 127, 199, 249
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	70, 119
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	140, 339
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	98
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	4 cut(s)	55, 127, 199, 249
XceI	RCATGY	1 cut(s)	343
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.