Rh3CG058100
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
4023865 .. 4025411
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG058100.1

Sequence Viewer

Length: 240 bp
ATGGCTGACGAGCCCTCAGTGGCACCACCGCAACCGCCTTCTCCTTCATCCTCCAATTCGCCCCTCGGAAACTCTGTGATCCCCATACTGAACAAGCTCCAGGACATCTTCGCGCAGCTCGGTTCCCAATCCACCATCGAGCTCCCTCAGGTCGCCGTTGTCGGCAGCCAGAGTAGCAGCAAGTCCAGTGTGCTCAAGGCCCTTTTTGCTATAGCTGATTCAGATTGCAAGGTGGAATGA

Protein Analysis

79

Amino Acids

8.11

Weight (kDa)

4.52

Isoelectric Point (pI)

88.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccII CGCG 1 cut(s) 113
AciI CCGC 2 cut(s) 29, 35
AclWI GGATC 1 cut(s) 73
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 4 cut(s) 97, 118, 142, 215
AluI AGCT 4 cut(s) 97, 118, 142, 215
Alw21I GWGCWC 2 cut(s) 144, 195
AlwI GGATC 1 cut(s) 73
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 3 cut(s) 115, 165, 177
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 199
AxyI CCTNAGG 1 cut(s) 147
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 2 cut(s) 15, 144
Bbv12I GWGCWC 2 cut(s) 144, 195
BbvI GCAGC 3 cut(s) 127, 177, 189
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 3 cut(s) 116, 166, 178
BlsI GCNGC 3 cut(s) 117, 167, 179
Bme1390I CCNGG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 24, 124
BmrFI CCNGG 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 186
Bse21I CCTNAGG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 30, 161
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 3 cut(s) 127, 177, 189
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 200
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 2 cut(s) 144, 195
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 3 cut(s) 15, 144, 195
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 2 cut(s) 29, 35
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 2 cut(s) 29, 160
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 24, 124
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 22
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 16, 147
BstF5I GGATG 1 cut(s) 47
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 174, 206
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 127, 177, 189
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 200
BtsCI GGATG 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 24, 193
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 199
CviJI RGCY 8 cut(s) 5, 13, 97, 118, 142, 168, 200, 215
CviKI_1 RGCY 8 cut(s) 5, 13, 97, 118, 142, 168, 200, 215
DdeI CTNAG 2 cut(s) 16, 147
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 2 cut(s) 15, 144
Eco53kI GAGCTC 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 99
EcoT38I GRGCYC 2 cut(s) 15, 144
FaiI YATR 2 cut(s) 86, 212
Fnu4HI GCNGC 3 cut(s) 116, 166, 178
FokI GGATG 1 cut(s) 34
FriOI GRGCYC 2 cut(s) 15, 144
Fsp4HI GCNGC 3 cut(s) 116, 166, 178
GlaI GCGC 1 cut(s) 114
GluI GCNGC 3 cut(s) 116, 166, 178
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 1 cut(s) 200
HhaI GCGC 1 cut(s) 115
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 68, 223
HpyAV CCTTC 2 cut(s) 48, 54
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 206
HpyF3I CTNAG 2 cut(s) 16, 147
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 2 cut(s) 102, 147
LpnPI CCDG 5 cut(s) 86, 113, 134, 182, 199
Lsp1109I GCAGC 3 cut(s) 127, 177, 189
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 3 cut(s) 15, 144, 195
MluCI AATT 1 cut(s) 55
MnlI CCTC 4 cut(s) 25, 61, 74, 156
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 174, 206
NdeII GATC 1 cut(s) 78
NlaIV GGNNCC 2 cut(s) 24, 124
PfeI GAWTC 1 cut(s) 218
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 3 cut(s) 117, 167, 179
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 24, 124
PspPI GGNCC 1 cut(s) 199
SacI GAGCTC 1 cut(s) 144
SatI GCNGC 3 cut(s) 116, 166, 178
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 3 cut(s) 15, 144, 195
SetI ASST 6 cut(s) 99, 120, 144, 153, 217, 234
SfcI CTRYAG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 1 cut(s) 55
SsiI CCGC 2 cut(s) 29, 35
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 99
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 55
TfiI GAWTC 1 cut(s) 218
TscAI CASTG 2 cut(s) 24, 193
TseI GCWGC 3 cut(s) 115, 165, 177
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 2 cut(s) 24, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.