Rmu_sc0014119.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014119.1
OG0000383
Physical Location & Seq
Reverse (-)
4673 .. 5781
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014119.1_g000003.1.cds

Sequence Viewer

Length: 750 bp
atggaagagaccaacgtcgttccggcgaacagcagcgagactaacgtctctccgaccactgacacagaaacctacgacgtcgtttcggcgaccaataccgaggtcaacgtcattccggcgaccacggagaccaacgacttcagctccgttttctcatattacaatacccaacctcccatctctgagggccaacagcttctagccggcacaaatcaggtcgaaaatgaggcccagtcaactactcgttcctcttgggttgccgggacagctcacttagacggctcaagagaatggatgtcaggcccgtctatttttctctcagcccagtttcagcttaagcctgaggaagaaggatcgactgagcaagaccctgcatatccttggtgggagcatcccgattatatcggaaacaaatacgctgagattggtaacggggaatcatactcgggaggaccgagggtgctgctgggattgagtaacggcgaggcagtatcacgccttgctcttgctcccgaattcgtcccttcttcttcaactgcctctaaccatcatcaacctccaaagcttcggtcaccactgtacaagacgaaattatgtaggtacaaaagttcttgctcgaagggagacctgtgtgactttgcgcatagtgatgacgagattcgcatgccacccaagtacgcctcaaagtgcaagtttggaagcctttgtccgcatgctaccctctctaaatgcttttaccgtcatgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.35

Weight (kDa)

5.01

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
Acc16I TGCGCA 1 cut(s) 642
AciI CCGC 1 cut(s) 710
AclWI GGATC 1 cut(s) 361
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 3 cut(s) 581, 602, 677
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 1 cut(s) 534
AluBI AGCT 5 cut(s) 144, 196, 269, 334, 565
AluI AGCT 5 cut(s) 144, 196, 269, 334, 565
Alw26I GTCTC 5 cut(s) 2, 32, 52, 122, 618
AlwI GGATC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 3 cut(s) 187, 228, 301
ApeKI GCWGC 2 cut(s) 33, 463
ApoI RAATTY 1 cut(s) 515
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AspLEI GCGC 1 cut(s) 643
AspS9I GGNCC 4 cut(s) 187, 229, 302, 452
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 564
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 1 cut(s) 452
AxyI CCTNAGG 1 cut(s) 342
BaeI ACNNNNGTAYC 2 cut(s) 592, 625
BbvI GCAGC 2 cut(s) 45, 450
BccI CCATC 2 cut(s) 185, 555
BceAI ACGGC 2 cut(s) 295, 496
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 5 cut(s) 2, 32, 52, 122, 618
BfaI CTAG 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 2 cut(s) 34, 464
BlsI GCNGC 2 cut(s) 35, 465
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 4 cut(s) 187, 229, 302, 452
BmrFI CCNGG 1 cut(s) 262
BmrI ACTGGG 2 cut(s) 226, 319
BmsI GCATC 1 cut(s) 400
BmuI ACTGGG 2 cut(s) 226, 319
BoxI GACNNNNGTC 2 cut(s) 14, 44
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 3 cut(s) 2, 122, 618
BsaJI CCNNGG 4 cut(s) 99, 123, 380, 455
BsaXI ACNNNNNCTCC 4 cut(s) 128, 157, 158, 187
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 232, 325
Bse21I CCTNAGG 1 cut(s) 342
BseDI CCNNGG 4 cut(s) 99, 123, 380, 455
BseGI GGATG 2 cut(s) 300, 391
BseMII CTCAG 5 cut(s) 174, 333, 333, 351, 411
BseNI ACTGG 2 cut(s) 232, 325
BseXI GCAGC 2 cut(s) 45, 450
BseYI CCCAGC 1 cut(s) 466
BshFI GGCC 3 cut(s) 189, 230, 303
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 4 cut(s) 23, 116, 204, 261
BslFI GGGAC 2 cut(s) 277, 506
BsmAI GTCTC 5 cut(s) 2, 32, 52, 122, 618
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 277, 506
BsnI GGCC 3 cut(s) 189, 230, 303
Bso31I GGTCTC 3 cut(s) 2, 122, 618
BsoBI CYCGRG 1 cut(s) 445
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 1 cut(s) 353
BspACI CCGC 1 cut(s) 710
BspANI GGCC 3 cut(s) 189, 230, 303
BspCNI CTCAG 5 cut(s) 175, 332, 334, 352, 412
BspHI TCATGA 1 cut(s) 742
BspPI GGATC 1 cut(s) 361
BspTI CTTAAG 1 cut(s) 335
BspTNI GGTCTC 3 cut(s) 2, 122, 618
BsrFI RCCGGY 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 2 cut(s) 232, 325
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 99, 123, 380, 455
BssMI GATC 1 cut(s) 353
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 380
Bst4CI ACNGT 2 cut(s) 579, 740
BstACI GRCGYC 1 cut(s) 78
BstAFI CTTAAG 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 205, 665, 714
BstDEI CTNAG 6 cut(s) 183, 274, 319, 342, 360, 420
BstDSI CCRYGG 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 570
BstF5I GGATG 2 cut(s) 300, 391
BstHHI GCGC 1 cut(s) 643
BstKTI GATC 1 cut(s) 356
BstMAI GTCTC 5 cut(s) 2, 32, 52, 122, 618
BstMBI GATC 1 cut(s) 353
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNSI RCATGY 2 cut(s) 667, 716
BstPAI GACNNNNGTC 2 cut(s) 14, 44
BstPI GGTNACC 1 cut(s) 570
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 45, 450
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 3 cut(s) 189, 230, 303
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 300, 391
BtsIMutI CAGTG 2 cut(s) 57, 575
Cac8I GCNNGC 3 cut(s) 205, 665, 714
CciI TCATGA 1 cut(s) 742
CfoI GCGC 1 cut(s) 643
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 4 cut(s) 187, 229, 302, 452
Csp6I GTAC 3 cut(s) 580, 601, 676
CviAII CATG 3 cut(s) 664, 713, 743
CviQI GTAC 3 cut(s) 580, 601, 676
DdeI CTNAG 6 cut(s) 183, 274, 319, 342, 360, 420
DpnI GATC 1 cut(s) 355
DpnII GATC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 380
Eco31I GGTCTC 3 cut(s) 2, 122, 618
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 124
Eco81I CCTNAGG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 445
Eco91I GGTNACC 1 cut(s) 570
EcoO65I GGTNACC 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 515
EcoT14I CCWWGG 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 380
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 3 cut(s) 667, 716, 746
FaiI YATR 9 cut(s) 157, 376, 402, 442, 595, 645, 665, 714, 744
FaqI GGGAC 2 cut(s) 277, 506
FatI CATG 3 cut(s) 663, 712, 742
Fnu4HI GCNGC 2 cut(s) 34, 464
FokI GGATG 2 cut(s) 307, 378
Fsp4HI GCNGC 2 cut(s) 34, 464
FspBI CTAG 1 cut(s) 200
FspI TGCGCA 1 cut(s) 642
GlaI GCGC 1 cut(s) 642
GluI GCNGC 2 cut(s) 34, 464
GsaI CCCAGC 1 cut(s) 470
HaeIII GGCC 3 cut(s) 189, 230, 303
HapII CCGG 4 cut(s) 23, 116, 204, 261
HhaI GCGC 1 cut(s) 643
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 667, 716, 746
Hin6I GCGC 1 cut(s) 641
HinP1I GCGC 1 cut(s) 641
HincII GTYRAC 2 cut(s) 106, 237
HindII GTYRAC 2 cut(s) 106, 237
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 2 cut(s) 437, 658
HpaII CCGG 4 cut(s) 23, 116, 204, 261
HphI GGTGA 1 cut(s) 564
Hpy166II GTNNAC 2 cut(s) 106, 237
Hpy188I TCNGA 3 cut(s) 54, 184, 407
Hpy188III TCNNGA 5 cut(s) 285, 395, 447, 512, 743
Hpy8I GTNNAC 2 cut(s) 106, 237
Hpy99I CGWCG 3 cut(s) 20, 80, 83
HpyAV CCTTC 3 cut(s) 344, 534, 613
HpyCH4III ACNGT 2 cut(s) 579, 740
HpyCH4IV ACGT 4 cut(s) 15, 45, 78, 108
HpyCH4V TGCA 2 cut(s) 374, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 6 cut(s) 183, 274, 319, 342, 360, 420
HpySE526I ACGT 4 cut(s) 15, 45, 78, 108
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 667, 716, 746
HspAI GCGC 1 cut(s) 641
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 353
LmnI GCTCC 3 cut(s) 149, 388, 514
Lsp1109I GCAGC 2 cut(s) 45, 450
LweI GCATC 1 cut(s) 400
MaeI CTAG 1 cut(s) 200
MaeII ACGT 4 cut(s) 15, 45, 78, 108
MaeIII GTNAC 4 cut(s) 428, 476, 570, 632
MalI GATC 1 cut(s) 355
MboI GATC 1 cut(s) 353
MboII GAAGA 4 cut(s) 17, 359, 519, 522
MluCI AATT 2 cut(s) 515, 590
MmeI TCCRAC 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 203
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 648
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 4 cut(s) 23, 116, 204, 261
MspR9I CCNGG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 266
NaeI GCCGGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 262
NdeII GATC 1 cut(s) 353
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 3 cut(s) 667, 716, 746
NmuCI GTSAC 2 cut(s) 570, 632
NsbI TGCGCA 1 cut(s) 642
NspI RCATGY 2 cut(s) 667, 716
PaeI GCATGC 2 cut(s) 667, 716
PagI TCATGA 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 452
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 437, 658
PkrI GCNGC 2 cut(s) 35, 465
PshAI GACNNNNGTC 2 cut(s) 14, 44
PspEI GGTNACC 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 466
PspPI GGNCC 4 cut(s) 187, 229, 302, 452
RsaI GTAC 3 cut(s) 581, 602, 677
RsaNI GTAC 3 cut(s) 580, 601, 676
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 34, 464
Sau3AI GATC 1 cut(s) 353
Sau96I GGNCC 4 cut(s) 187, 229, 302, 452
ScrFI CCNGG 1 cut(s) 262
SfaNI GCATC 1 cut(s) 400
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 283, 335
SmoI CTYRAG 2 cut(s) 283, 335
SphI GCATGC 2 cut(s) 667, 716
Sse9I AATT 2 cut(s) 515, 590
SsiI CCGC 1 cut(s) 710
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 2 cut(s) 579, 740
TaiI ACGT 4 cut(s) 18, 48, 81, 111
TaqI TCGA 3 cut(s) 219, 356, 617
TaqII GACCGA 2 cut(s) 469, 558
TasI AATT 2 cut(s) 515, 590
TatI WGTACW 1 cut(s) 579
TfiI GAWTC 2 cut(s) 437, 658
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 2 cut(s) 64, 582
TseFI GTSAC 2 cut(s) 570, 632
TseI GCWGC 2 cut(s) 33, 463
Tsp45I GTSAC 2 cut(s) 570, 632
TspGWI ACGGA 2 cut(s) 136, 140
TspRI CASTG 2 cut(s) 64, 582
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 515
XceI RCATGY 2 cut(s) 667, 716
XspI CTAG 1 cut(s) 200
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.