Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Forward (+)

9211338 .. 9211592

Gene Structure 255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCTGACGAGCCCTCAGTGGCACCACCGCAACCGCCTTCTCCTTCATCCTCCAATTCACCCCTCGGAAACTCCGTGATCCCTATAGTGAACAAGCTCCAGGAAATCTTCGCGCAGCTCGGTTCCCAATCCACCATCAAGGTCGCCGTTGTCGGCAGCCAGAGTAGCGGCAAGTCCAGTGTGCTTGAGGCCCTTGTAGGCCGCAACTTCTTGCCCCGTGGCTCTGAAATCTGCATGCGCCGCCCCCTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

84

Amino Acids

8.74

Weight (kDa)

9.18

Isoelectric Point (pI)

85.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	48 - 84	3.7e-14	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccII	CGCG	1 cut(s)	113
AciI	CCGC	5 cut(s)	29, 35, 168, 202, 241
AclWI	GGATC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	97, 118
AluI	AGCT	2 cut(s)	97, 118
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	2 cut(s)	189, 199
ApeKI	GCWGC	2 cut(s)	115, 156
AspLEI	GCGC	2 cut(s)	115, 240
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	127, 168
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	5 cut(s)	116, 157, 169, 202, 241
BlsI	GCNGC	5 cut(s)	117, 158, 170, 203, 242
Bme1390I	CCNGG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	24, 124
BmrFI	CCNGG	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	64, 217
Bse1I	ACTGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	64, 217
BseGI	GGATG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	127, 168
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	2 cut(s)	191, 201
BshNI	GGYRCC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	191, 201
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	5 cut(s)	29, 35, 168, 202, 241
BspANI	GGCC	2 cut(s)	191, 201
BspCNI	CTCAG	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	24, 124
BspPI	GGATC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	64, 217
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	16
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	115, 240
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 240
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	127, 168
BsuRI	GGCC	2 cut(s)	191, 201
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	24, 184
Cac8I	GCNNGC	1 cut(s)	236
CfoI	GCGC	2 cut(s)	115, 240
Cfr13I	GGNCC	1 cut(s)	190
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	8 cut(s)	5, 13, 97, 118, 159, 191, 201, 222
CviKI_1	RGCY	8 cut(s)	5, 13, 97, 118, 159, 191, 201, 222
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	1 cut(s)	238
FaiI	YATR	2 cut(s)	86, 236
FatI	CATG	1 cut(s)	234
Fnu4HI	GCNGC	5 cut(s)	116, 157, 169, 202, 241
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	5 cut(s)	116, 157, 169, 202, 241
GlaI	GCGC	2 cut(s)	114, 239
GluI	GCNGC	5 cut(s)	116, 157, 169, 202, 241
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	191, 201
HhaI	GCGC	2 cut(s)	115, 240
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	2 cut(s)	113, 238
HinP1I	GCGC	2 cut(s)	113, 238
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	68, 226
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	48, 54
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 240
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	2 cut(s)	113, 238
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	4 cut(s)	86, 113, 173, 190
Lsp1109I	GCAGC	2 cut(s)	127, 168
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	1 cut(s)	55
MnlI	CCTC	4 cut(s)	25, 61, 74, 181
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	165, 240
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	2 cut(s)	24, 124
NspI	RCATGY	1 cut(s)	238
PaeI	GCATGC	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	5 cut(s)	117, 158, 170, 203, 242
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	24, 124
PspPI	GGNCC	1 cut(s)	190
SatI	GCNGC	5 cut(s)	116, 157, 169, 202, 241
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	3 cut(s)	99, 120, 144
SfcI	CTRYAG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	5 cut(s)	29, 35, 168, 202, 241
StyD4I	CCNGG	1 cut(s)	99
TasI	AATT	1 cut(s)	55
TauI	GCSGC	3 cut(s)	171, 204, 243
TscAI	CASTG	2 cut(s)	24, 184
TseI	GCWGC	2 cut(s)	115, 156
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	24, 184
XceI	RCATGY	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.