Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

9784841 .. 9785167

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1114200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAGAGAAGGGTTTTATGGAAGAAGAAGAAGGAGCTCGTCTCCTACTTTGGGTTAGCTTTAATGGCGGTTCTCTTTCCTCTCGGTTCCCTACTCAACGACGAAGGAAATGCATTGATGTCAATTAAGGCGTCATTCAGCAACATCGCTAACATGTTGTTCGACTGGAACGATGCCCATGACGATAATTTCTATTCTTGGCATGGGGTTTTCTGCGACAATGTCAGCCTCTCTGTGGCCTCCTTGAATCTGTCTAATCTAAACCTCGGTGGAGAGATTTTGCCAGCCATCAGAGACTTGGGGAACTTGGAATACATAGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

109

Amino Acids

12.13

Weight (kDa)

4.74

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 73	7e-07	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	51, 235
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	2 cut(s)	37, 59
AluI	AGCT	2 cut(s)	37, 59
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	46, 288
AoxI	GGCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BccI	CCATC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BcoDI	GTCTC	2 cut(s)	46, 288
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 235
Bse1I	ACTGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	51, 235
BseNI	ACTGG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	51, 235
BsmAI	GTCTC	2 cut(s)	46, 288
BsmBI	CGTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	265
BssNI	GRCGYC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	285
BstMAI	GTCTC	2 cut(s)	46, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	285
CseI	GACGC	1 cut(s)	120
CviAII	CATG	3 cut(s)	154, 179, 203
CviJI	RGCY	5 cut(s)	37, 59, 228, 239, 287
CviKI_1	RGCY	5 cut(s)	37, 59, 228, 239, 287
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	3 cut(s)	157, 182, 206
FaiI	YATR	5 cut(s)	19, 155, 180, 204, 317
FatI	CATG	3 cut(s)	153, 178, 202
FriOI	GRGCYC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	157, 182, 206
HinfI	GANTC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	3, 25, 98
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	157, 182, 206
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	2 cut(s)	151, 297
LweI	GCATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	34, 37, 40
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	2 cut(s)	123, 187
MnlI	CCTC	4 cut(s)	90, 239, 250, 275
Mph1103I	ATGCAT	1 cut(s)	115
MseI	TTAA	2 cut(s)	62, 126
MwoI	GCNNNNNNNGC	1 cut(s)	65
NlaIII	CATG	3 cut(s)	157, 182, 206
NlaIV	GGNNCC	1 cut(s)	88
NsiI	ATGCAT	1 cut(s)	115
NspI	RCATGY	1 cut(s)	157
PciI	ACATGT	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	247
PflFI	GACNNNGTC	1 cut(s)	221
PscI	ACATGT	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	88
PsrI	GAACNNNNNNTAC	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	62, 126
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	3 cut(s)	39, 61, 267
SfaNI	GCATC	1 cut(s)	163
Sse9I	AATT	2 cut(s)	123, 187
SsiI	CCGC	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	39
TaqI	TCGA	1 cut(s)	162
TasI	AATT	2 cut(s)	123, 187
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	62, 126
Tru9I	TTAA	2 cut(s)	62, 126
Tth111I	GACNNNGTC	1 cut(s)	221
XceI	RCATGY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.