Rorug01G0389600
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
50060514 .. 50061574
1061 bp
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UTR
Exon/CDS
Intron
Rorug01G0389600.1

Sequence Viewer

Length: 576 bp
ATGTCAAATGGAAGTTTAGAGGAGTGGCTACACAGAGAAAACCAATCAAGGAGTTTGAACCTTCTTCAAAGACTGAATATTGCTGTTGATGTGGCTTCTGCGTTGTGTTATCTTCATGACTATTGTGAACCACAAGTCATTCACTGTGATATGAAGCCGAGCAACGTTCTTCTTGATGATGACATGGTTGCTCGTGTTGGTGATTTTGGGTTAGCAAGACTCATCTCAACGACCACAGACTCCTCTCAAAATCAATGTAGCACTGTTGGAATAAAGGGAACCATTGGCTATGCTGCTCCTGAGTATGCGAGTGGTGTTGAGCCATCAAGACGAGGGGATGTATATAGTTATGGGGTGCTTGTTTTGCAAATGTTCACAGGAAGAAGACCTATCGCTGAAATGTTTAAAGAGGGTTTGAACCTGCATAACTTTGTCAAGATGGCCATACCAGAAAGAGTGATGCAGATTGTAGATCCTAGTCTTCTGGCCACTTTAGAAGAGACAGCACCTGCAACATCTCAAAATATAGTGAACTACATTAGTAGTTACAATAATGAAATCGAAGCCGTATATTGA

Protein Analysis

191

Amino Acids

21.21

Weight (kDa)

4.83

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 146 2.5e-24 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 137 3.1e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 517
Acc36I ACCTGC 2 cut(s) 429, 517
AclI AACGTT 1 cut(s) 165
AclWI GGATC 1 cut(s) 467
AcoI YGGCCR 2 cut(s) 441, 486
AgsI TTSAA 3 cut(s) 58, 68, 418
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 1 cut(s) 467
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 2 cut(s) 441, 486
ApeKI GCWGC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 212
BalI TGGCCA 2 cut(s) 443, 488
BauI CACGAG 1 cut(s) 192
BbsI GAAGAC 2 cut(s) 391, 473
BbvI GCAGC 1 cut(s) 280
BccI CCATC 2 cut(s) 331, 433
BceAI ACGGC 1 cut(s) 551
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 1 cut(s) 477
BfuAI ACCTGC 2 cut(s) 429, 517
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 280
BmsI GCATC 1 cut(s) 450
BpiI GAAGAC 2 cut(s) 391, 473
BseGI GGATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 291
BseRI GAGGAG 2 cut(s) 35, 232
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 2 cut(s) 443, 488
BsmAI GTCTC 1 cut(s) 494
BsnI GGCC 2 cut(s) 443, 488
Bsp143I GATC 1 cut(s) 472
BspANI GGCC 2 cut(s) 443, 488
BspCNI CTCAG 1 cut(s) 292
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 280
BspMI ACCTGC 2 cut(s) 429, 517
BspPI GGATC 1 cut(s) 467
BssMI GATC 1 cut(s) 472
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 146, 265
Bst6I CTCTTC 1 cut(s) 492
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 475
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 2 cut(s) 391, 473
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 2 cut(s) 443, 488
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 142, 261
BveI ACCTGC 2 cut(s) 429, 517
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 115
CviAII CATG 2 cut(s) 116, 184
CviJI RGCY 8 cut(s) 28, 95, 157, 288, 322, 443, 488, 566
CviKI_1 RGCY 8 cut(s) 28, 95, 157, 288, 322, 443, 488, 566
DdeI CTNAG 1 cut(s) 300
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
DraI TTTAAA 1 cut(s) 406
EaeI YGGCCR 2 cut(s) 441, 486
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
FaeI CATG 2 cut(s) 119, 187
FatI CATG 2 cut(s) 115, 183
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 477
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 2 cut(s) 443, 488
Hin1II CATG 2 cut(s) 119, 187
HinfI GANTC 2 cut(s) 219, 239
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 3 cut(s) 128, 375, 532
Hpy188III TCNNGA 5 cut(s) 116, 173, 299, 327, 436
Hpy8I GTNNAC 3 cut(s) 128, 375, 532
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 2 cut(s) 146, 265
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 367, 424, 463, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 119, 187
Kzo9I GATC 1 cut(s) 472
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 312, 363, 434, 462, 470, 522
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 450
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 545
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 7 cut(s) 56, 104, 161, 393, 396, 473, 509
MflI RGATCY 1 cut(s) 472
MlsI TGGCCA 2 cut(s) 443, 488
MluNI TGGCCA 2 cut(s) 443, 488
MlyI GAGTC 2 cut(s) 213, 233
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 13, 253, 326, 403
Mox20I TGGCCA 2 cut(s) 443, 488
MscI TGGCCA 2 cut(s) 443, 488
MseI TTAA 1 cut(s) 405
Msp20I TGGCCA 2 cut(s) 443, 488
MwoI GCNNNNNNNGC 1 cut(s) 364
NdeII GATC 1 cut(s) 472
NlaIII CATG 2 cut(s) 119, 187
NlaIV GGNNCC 1 cut(s) 280
NmeAIII GCCGAG 1 cut(s) 183
PagI TCATGA 1 cut(s) 115
PaqCI CACCTGC 1 cut(s) 517
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 2 cut(s) 213, 233
PpsI GAGTC 2 cut(s) 213, 233
Psp1406I AACGTT 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 472
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 1 cut(s) 472
SchI GAGTC 2 cut(s) 213, 233
SetI ASST 5 cut(s) 63, 168, 391, 423, 511
SfaNI GCATC 1 cut(s) 450
SspI AATATT 1 cut(s) 79
SspMI CTAG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 146, 265
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 561
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 149, 268
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 3 cut(s) 104, 167, 570
TspRI CASTG 2 cut(s) 149, 268
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.