RchiOBHm_Chr4g0390421
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
5744598 .. 5745272
675 bp
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UTR
Exon/CDS
Intron
PRQ36344

Sequence Viewer

Length: 267 bp
ATGGATCTTCCTGGATTGACCAAGTTTGCTGTAGATGCCATTGAACTTGCAAGAGAAGTCGATCCATCAGGTACAAGATACCGGGAGAGGCTACGGCACTTTCATCTCCTTGTGATTGTTTATCAAAAGGATTGCTTCTTTTACAAGCCAAAACACTTGCTTTCTACTGTATGGTTGGCATTTTTAGGTAGAACATTTGGAGTGATAACAAAACCTGATCTAATGGACAAGGGAGCCAACGCTTTCAATGTAAGGATCCAATTATAG

Protein Analysis

88

Amino Acids

10.21

Weight (kDa)

9.51

Isoelectric Point (pI)

14.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 12, 56, 250, 263
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 2 cut(s) 44, 247
AjnI CCWGG 1 cut(s) 10
AlwI GGATC 4 cut(s) 12, 56, 250, 263
AsuC2I CCSGG 1 cut(s) 83
BamHI GGATCC 1 cut(s) 255
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 12
BcnI CCSGG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 30
Bme1390I CCNGG 2 cut(s) 12, 83
BmiI GGNNCC 2 cut(s) 235, 257
BmrFI CCNGG 2 cut(s) 12, 83
BmsI GCATC 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 12
BsiSI CCGG 1 cut(s) 82
Bsp143I GATC 4 cut(s) 4, 61, 217, 255
BspLI GGNNCC 2 cut(s) 235, 257
BspPI GGATC 4 cut(s) 12, 56, 250, 263
BssMI GATC 4 cut(s) 4, 61, 217, 255
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 169
BstKTI GATC 4 cut(s) 7, 64, 220, 258
BstMBI GATC 4 cut(s) 4, 61, 217, 255
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 2 cut(s) 10, 81
BstSFI CTRYAG 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 4, 255
BstYI RGATCY 2 cut(s) 4, 255
Csp6I GTAC 1 cut(s) 72
CviJI RGCY 3 cut(s) 91, 148, 236
CviKI_1 RGCY 3 cut(s) 91, 148, 236
CviQI GTAC 1 cut(s) 72
DpnI GATC 4 cut(s) 6, 63, 219, 257
DpnII GATC 4 cut(s) 4, 61, 217, 255
EcoRII CCWGG 1 cut(s) 10
FaiI YATR 2 cut(s) 172, 265
FalI AAGNNNNNCTT 2 cut(s) 119, 151
HapII CCGG 1 cut(s) 82
HpaII CCGG 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Kzo9I GATC 4 cut(s) 4, 61, 217, 255
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 4 cut(s) 24, 54, 95, 228
LweI GCATC 1 cut(s) 25
MalI GATC 4 cut(s) 6, 63, 219, 257
MboI GATC 4 cut(s) 4, 61, 217, 255
MflI RGATCY 2 cut(s) 4, 255
MluCI AATT 1 cut(s) 260
MnlI CCTC 1 cut(s) 81
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 2 cut(s) 12, 83
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 83
NdeII GATC 4 cut(s) 4, 61, 217, 255
NlaIV GGNNCC 2 cut(s) 235, 257
PfoI TCCNGGA 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 235, 257
PsuI RGATCY 2 cut(s) 4, 255
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
Sau3AI GATC 4 cut(s) 4, 61, 217, 255
ScrFI CCNGG 2 cut(s) 12, 83
SetI ASST 3 cut(s) 73, 190, 217
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 30
Sse9I AATT 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 10, 81
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.