Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

52031714 .. 52036246

Gene Structure 4533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGGCGTTTGTCGTTGGCGAAGAAGCGAGTTCCATAGCCGGAGTTAGGAGGGTCGAGCTCGGGTCCGGCGATCGTTTTCGATCCGTCTTCTCCGAATCGTGGCCAATGGCGGACGAGGGGGTGGTGCTTGATTGCGGCTTGCCGGCGGCGATATCTGGTGTCTCTGCCGCATCGGAGATCCGTGCGGCGGCCGGATGCTCGATCCCATGCCGGAGCGTGGGATCCATTATTGTCGGACATTCGGACTATCCACCCGGCCATGGCCGACGAGCCCTCGGTGGCACCACCGCAACCGCCTTCTCCTTCATCCTCCAATTCGCCCCTCGAAACTCCGTGATCCCCATAGTGAACAAGCTCCAGGACATCTTCGTGCAGCTCGGTTCCCAATCCACCATCGAGCTCCCTCGGGTCGCCGTTTGTCGGCAGCCGAGTAGCGGCAAGTCCGGTGTGCTCGAGGCCCTTGTAGGCCGCGACTTCTTGCCCCGTGGCTCGAAATCGCACGCGCCGCCCCTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

173

Amino Acids

17.95

Weight (kDa)

8.48

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	138 - 165	1.7e-06	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	2 cut(s)	474, 506
AclWI	GGATC	6 cut(s)	78, 175, 199, 219, 232, 334
AcoI	YGGCCR	4 cut(s)	104, 192, 259, 265
AfiI	CCNNNNNNNGG	7 cut(s)	48, 102, 190, 220, 263, 423, 437
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	4 cut(s)	61, 358, 379, 403
AluI	AGCT	4 cut(s)	61, 358, 379, 403
Alw21I	GWGCWC	3 cut(s)	63, 405, 456
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	6 cut(s)	78, 175, 199, 219, 232, 334
Ama87I	CYCGRG	3 cut(s)	62, 408, 455
AoxI	GGCC	6 cut(s)	104, 192, 259, 265, 459, 469
ApeKI	GCWGC	2 cut(s)	376, 427
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	66, 460
AsuC2I	CCSGG	1 cut(s)	258
AvaI	CYCGRG	3 cut(s)	62, 408, 455
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	106
BamHI	GGATCC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	3 cut(s)	63, 277, 405
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	3 cut(s)	63, 405, 456
BbvI	GCAGC	2 cut(s)	388, 439
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	258, 362
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	3 cut(s)	62, 408, 455
BmgT120I	GGNCC	2 cut(s)	66, 460
BmiI	GGNNCC	4 cut(s)	67, 226, 286, 385
BmrFI	CCNGG	2 cut(s)	258, 362
BmsI	GCATC	2 cut(s)	182, 188
BpiI	GAAGAC	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	4 cut(s)	262, 277, 407, 487
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	7 cut(s)	48, 102, 190, 220, 263, 423, 437
Bse118I	RCCGGY	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	4 cut(s)	262, 277, 407, 487
BseGI	GGATG	2 cut(s)	203, 309
BseLI	CCNNNNNNNGG	7 cut(s)	48, 102, 190, 220, 263, 423, 437
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	388, 439
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	2 cut(s)	474, 506
Bsh1285I	CGRYCG	2 cut(s)	76, 195
BshFI	GGCC	6 cut(s)	106, 194, 261, 267, 461, 471
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	2 cut(s)	76, 195
BsiHKAI	GWGCWC	3 cut(s)	63, 405, 456
BsiHKCI	CYCGRG	3 cut(s)	62, 408, 455
BsiSI	CCGG	7 cut(s)	42, 69, 146, 195, 214, 258, 447
BslI	CCNNNNNNNGG	7 cut(s)	48, 102, 190, 220, 263, 423, 437
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	6 cut(s)	106, 194, 261, 267, 461, 471
BsoBI	CYCGRG	3 cut(s)	62, 408, 455
Bsp1286I	GDGCHC	4 cut(s)	63, 277, 405, 456
Bsp143I	GATC	6 cut(s)	73, 83, 180, 204, 224, 339
Bsp19I	CCATGG	1 cut(s)	262
BspANI	GGCC	6 cut(s)	106, 194, 261, 267, 461, 471
BspFNI	CGCG	2 cut(s)	474, 506
BspLI	GGNNCC	4 cut(s)	67, 226, 286, 385
BspPI	GGATC	6 cut(s)	78, 175, 199, 219, 232, 334
BspT107I	GGYRCC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	4 cut(s)	262, 277, 407, 487
BssMI	GATC	6 cut(s)	73, 83, 180, 204, 224, 339
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	143, 147, 504
BstDSI	CCRYGG	2 cut(s)	262, 487
BstF5I	GGATG	2 cut(s)	203, 309
BstFNI	CGCG	2 cut(s)	474, 506
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	6 cut(s)	76, 86, 183, 207, 227, 342
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	6 cut(s)	73, 83, 180, 204, 224, 339
BstMCI	CGRYCG	2 cut(s)	76, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	256, 360
BstUI	CGCG	2 cut(s)	474, 506
BstV1I	GCAGC	2 cut(s)	388, 439
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	2 cut(s)	180, 224
BstYI	RGATCY	2 cut(s)	180, 224
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	6 cut(s)	106, 194, 261, 267, 461, 471
BtgI	CCRYGG	2 cut(s)	262, 487
BtsCI	GGATG	2 cut(s)	203, 309
Cac8I	GCNNGC	3 cut(s)	143, 147, 504
CfoI	GCGC	1 cut(s)	508
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	66, 460
CviAII	CATG	2 cut(s)	210, 263
DpnI	GATC	6 cut(s)	75, 85, 182, 206, 226, 341
DpnII	GATC	6 cut(s)	73, 83, 180, 204, 224, 339
EaeI	YGGCCR	4 cut(s)	104, 192, 259, 265
EagI	CGGCCG	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	128
Ecl136II	GAGCTC	2 cut(s)	61, 403
EclXI	CGGCCG	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	3 cut(s)	63, 277, 405
Eco32I	GATATC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	66
Eco52I	CGGCCG	1 cut(s)	192
Eco53kI	GAGCTC	2 cut(s)	61, 403
Eco88I	CYCGRG	3 cut(s)	62, 408, 455
EcoICRI	GAGCTC	2 cut(s)	61, 403
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	360
EcoRV	GATATC	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	3 cut(s)	63, 277, 405
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	213, 266
FaiI	YATR	4 cut(s)	38, 211, 264, 347
FatI	CATG	2 cut(s)	209, 262
FokI	GGATG	2 cut(s)	210, 296
FriOI	GRGCYC	3 cut(s)	63, 277, 405
GlaI	GCGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	6 cut(s)	106, 194, 261, 267, 461, 471
HapII	CCGG	7 cut(s)	42, 69, 146, 195, 214, 258, 447
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	2 cut(s)	213, 266
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	7 cut(s)	42, 69, 146, 195, 214, 258, 447
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	4 cut(s)	97, 178, 239, 247
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	1 cut(s)	273
HpyAV	CCTTC	2 cut(s)	310, 316
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
Hsp92II	CATG	2 cut(s)	213, 266
HspAI	GCGC	1 cut(s)	506
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	6 cut(s)	73, 83, 180, 204, 224, 339
LmnI	GCTCC	3 cut(s)	216, 363, 408
Lsp1109I	GCAGC	2 cut(s)	388, 439
LweI	GCATC	2 cut(s)	182, 188
MalI	GATC	6 cut(s)	75, 85, 182, 206, 226, 341
MboI	GATC	6 cut(s)	73, 83, 180, 204, 224, 339
MboII	GAAGA	3 cut(s)	35, 82, 361
MflI	RGATCY	2 cut(s)	180, 224
MhlI	GDGCHC	4 cut(s)	63, 277, 405, 456
MlsI	TGGCCA	1 cut(s)	106
MluCI	AATT	1 cut(s)	317
MluNI	TGGCCA	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	7 cut(s)	45, 112, 287, 323, 336, 417, 451
Mox20I	TGGCCA	1 cut(s)	106
MroNI	GCCGGC	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	106
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	106
MspI	CCGG	7 cut(s)	42, 69, 146, 195, 214, 258, 447
MspR9I	CCNGG	2 cut(s)	258, 362
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	2 cut(s)	474, 506
MwoI	GCNNNNNNNGC	1 cut(s)	508
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	6 cut(s)	73, 83, 180, 204, 224, 339
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	213, 266
NlaIV	GGNNCC	4 cut(s)	67, 226, 286, 385
NmeAIII	GCCGAG	1 cut(s)	456
PaeR7I	CTCGAG	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	98
PfoI	TCCNGGA	1 cut(s)	360
Ple19I	CGATCG	1 cut(s)	76
Psp124BI	GAGCTC	2 cut(s)	63, 405
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	4 cut(s)	67, 226, 286, 385
PspPI	GGNCC	2 cut(s)	66, 460
PspXI	VCTCGAGB	1 cut(s)	455
PsuI	RGATCY	2 cut(s)	180, 224
PvuI	CGATCG	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	371
SacI	GAGCTC	2 cut(s)	63, 405
Sau3AI	GATC	6 cut(s)	73, 83, 180, 204, 224, 339
Sau96I	GGNCC	2 cut(s)	66, 460
ScrFI	CCNGG	2 cut(s)	258, 362
SduI	GDGCHC	4 cut(s)	63, 277, 405, 456
SetI	ASST	4 cut(s)	63, 360, 381, 405
SfaNI	GCATC	2 cut(s)	182, 188
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	1 cut(s)	317
SstI	GAGCTC	2 cut(s)	63, 405
StyD4I	CCNGG	2 cut(s)	256, 360
StyI	CCWWGG	1 cut(s)	262
TaqI	TCGA	7 cut(s)	57, 82, 203, 328, 399, 456, 494
TasI	AATT	1 cut(s)	317
TauI	GCSGC	9 cut(s)	8, 141, 152, 173, 191, 194, 441, 474, 511
TfiI	GAWTC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	376, 427
TspDTI	ATGAA	1 cut(s)	298
TspGWI	ACGGA	3 cut(s)	76, 173, 325
VpaK11BI	GGWCC	1 cut(s)	66
XhoI	CTCGAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.