Rroxscaffold_3G00261280
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000383
Physical Location & Seq
Forward (+)
55608846 .. 55609735
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261280.1

Sequence Viewer

Length: 216 bp
ATGGAGAATCTGATCTCGCTAGTCAACAAAATCCAAAGAGCTTGCACGGCTCTCGGTGACCACGGCGAAGCCAGCGCATTACCGACTCTCTGGGACGCGCTCCCCTCCATCGCTGTCGTCGGTGGCCAGAGTTCAGGGAAGTCTTCTGTCTTGGAGAGCATTGTGGGGAAGGACTTCTTACCCCGTGGTTCTGGTAAGATTCTTGGTTATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

71

Amino Acids

7.34

Weight (kDa)

6.53

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 37 - 65 6e-11 Dynamin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 124
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AoxI GGCC 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 2 cut(s) 77, 100
AsuHPI GGTGA 1 cut(s) 68
BalI TGGCCA 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 135
BccI CCATC 1 cut(s) 116
BceAI ACGGC 2 cut(s) 63, 79
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BfaI CTAG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 61, 184
BseDI CCNNGG 2 cut(s) 61, 184
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 126
BslFI GGGAC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 12
BspANI GGCC 1 cut(s) 126
BspFNI CGCG 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 61, 184
BssMI GATC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 43, 73
BstDSI CCRYGG 2 cut(s) 61, 184
BstEII GGTNACC 1 cut(s) 56
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 2 cut(s) 77, 100
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 47, 72
BstPI GGTNACC 1 cut(s) 56
BstUI CGCG 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 2 cut(s) 61, 184
BtgZI GCGATG 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 43, 73
CfoI GCGC 2 cut(s) 77, 100
CseI GACGC 1 cut(s) 104
CviJI RGCY 4 cut(s) 41, 50, 71, 126
CviKI_1 RGCY 4 cut(s) 41, 50, 71, 126
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 124
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 107
FspBI CTAG 1 cut(s) 20
GlaI GCGC 2 cut(s) 76, 99
HaeIII GGCC 1 cut(s) 126
HgaI GACGC 1 cut(s) 104
HhaI GCGC 2 cut(s) 77, 100
Hin6I GCGC 2 cut(s) 75, 98
HinP1I GCGC 2 cut(s) 75, 98
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 3 cut(s) 7, 85, 199
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 72
HspAI GCGC 2 cut(s) 75, 98
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 5 cut(s) 76, 85, 120, 140, 177
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 1 cut(s) 135
MlsI TGGCCA 1 cut(s) 126
MluNI TGGCCA 1 cut(s) 126
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 1 cut(s) 115
Mox20I TGGCCA 1 cut(s) 126
MroXI GAANNNNTTC 1 cut(s) 173
MscI TGGCCA 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 126
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 47, 72
NdeII GATC 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 7, 199
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PspEI GGTNACC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 12
SchI GAGTC 1 cut(s) 79
SetI ASST 1 cut(s) 43
SspMI CTAG 1 cut(s) 20
TfiI GAWTC 2 cut(s) 7, 199
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.