Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002096.1

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

135381 .. 135882

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002096.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggttgacgagccctcagtggcaccatcgcaaccgccttctccttcatcctccaattcacccctcggaaactccgtgatccccatagtgaacaagctccaggacatcttcgtgcagctcagttcccaatccaccattgagctccctcaggtcgccgttgtcggcagccagagtagcggcaagtccagtgtgctcgaggaccttgtaggccacgacttcttgccccgtggctctgaaatgtgcacgcgccccccttcgtttagatctagatctggagaactcgatgccgcttccaagctctgcgtcgaggtccaaacgacgttatattcaagccaaggaggaattctcgagaagaacgactctccgtttgaagccttcaactttgtttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

130

Amino Acids

13.78

Weight (kDa)

4.55

Isoelectric Point (pI)

79.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccII	CGCG	1 cut(s)	247
AciI	CCGC	3 cut(s)	35, 177, 288
AclWI	GGATC	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	330, 371, 379
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	4 cut(s)	97, 118, 142, 298
AluI	AGCT	4 cut(s)	97, 118, 142, 298
Alw21I	GWGCWC	3 cut(s)	144, 195, 245
Alw44I	GTGCAC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	2 cut(s)	194, 347
AoxI	GGCC	1 cut(s)	208
ApaLI	GTGCAC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	115, 165
ApoI	RAATTY	1 cut(s)	342
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	199, 310
AsuHPI	GGTGA	1 cut(s)	51
AvaI	CYCGRG	2 cut(s)	194, 347
AvaII	GGWCC	2 cut(s)	199, 310
AxyI	CCTNAGG	1 cut(s)	147
BaeGI	GKGCMC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	15, 144
Bbv12I	GWGCWC	3 cut(s)	144, 195, 245
BbvI	GCAGC	2 cut(s)	127, 177
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	267
BglII	AGATCT	2 cut(s)	263, 269
BisI	GCNGC	4 cut(s)	116, 166, 178, 288
BlsI	GCNGC	4 cut(s)	117, 167, 179, 289
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	2 cut(s)	199, 310
BmeT110I	CYCGRG	2 cut(s)	194, 347
BmgT120I	GGNCC	2 cut(s)	199, 310
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
BpmI	CTGGAG	2 cut(s)	83, 294
BsaBI	GATNNNNATC	1 cut(s)	268
BsaJI	CCNNGG	3 cut(s)	64, 226, 334
Bse1I	ACTGG	1 cut(s)	186
Bse21I	CCTNAGG	1 cut(s)	147
Bse8I	GATNNNNATC	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	3 cut(s)	64, 226, 334
BseGI	GGATG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	268
BseMII	CTCAG	3 cut(s)	30, 133, 161
BseNI	ACTGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	127, 177
BsgI	GTGCAG	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	3 cut(s)	144, 195, 245
BsiHKCI	CYCGRG	2 cut(s)	194, 347
BsnI	GGCC	1 cut(s)	210
BsoBI	CYCGRG	2 cut(s)	194, 347
Bsp1286I	GDGCHC	4 cut(s)	15, 144, 195, 245
Bsp143I	GATC	3 cut(s)	78, 263, 269
BspACI	CCGC	3 cut(s)	35, 177, 288
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	3 cut(s)	29, 132, 160
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	64, 226, 334
BssMI	GATC	3 cut(s)	78, 263, 269
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	3 cut(s)	16, 119, 147
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	3 cut(s)	81, 266, 272
BstMBI	GATC	3 cut(s)	78, 263, 269
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	127, 177
BstX2I	RGATCY	2 cut(s)	263, 269
BstYI	RGATCY	2 cut(s)	263, 269
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	24, 193
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	199, 310
CseI	GACGC	1 cut(s)	292
DdeI	CTNAG	3 cut(s)	16, 119, 147
DpnI	GATC	3 cut(s)	80, 265, 271
DpnII	GATC	3 cut(s)	78, 263, 269
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	15, 144
Eco47I	GGWCC	2 cut(s)	199, 310
Eco53kI	GAGCTC	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	147
Eco88I	CYCGRG	2 cut(s)	194, 347
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	2 cut(s)	15, 144
ErhI	CCWWGG	1 cut(s)	334
FaiI	YATR	2 cut(s)	86, 325
Fnu4HI	GCNGC	4 cut(s)	116, 166, 178, 288
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	2 cut(s)	15, 144
Fsp4HI	GCNGC	4 cut(s)	116, 166, 178, 288
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	4 cut(s)	116, 166, 178, 288
GsuI	CTGGAG	2 cut(s)	83, 294
HaeIII	GGCC	1 cut(s)	210
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	249
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	359
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	3 cut(s)	7, 91, 243
Hpy188I	TCNGA	2 cut(s)	68, 235
Hpy188III	TCNNGA	4 cut(s)	267, 273, 347, 349
Hpy8I	GTNNAC	3 cut(s)	7, 91, 243
Hpy99I	CGWCG	2 cut(s)	308, 322
HpyAV	CCTTC	4 cut(s)	48, 54, 264, 385
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	115, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	3 cut(s)	16, 119, 147
HpySE526I	ACGT	1 cut(s)	320
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	78, 263, 269
LmnI	GCTCC	2 cut(s)	102, 147
LpnPI	CCDG	6 cut(s)	86, 113, 134, 182, 199, 258
Lsp1109I	GCAGC	2 cut(s)	127, 177
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	320
MalI	GATC	3 cut(s)	80, 265, 271
MboI	GATC	3 cut(s)	78, 263, 269
MboII	GAAGA	2 cut(s)	100, 364
MflI	RGATCY	2 cut(s)	263, 269
MhlI	GDGCHC	4 cut(s)	15, 144, 195, 245
MluCI	AATT	2 cut(s)	55, 342
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	7 cut(s)	25, 61, 74, 156, 190, 301, 332
MseI	TTAA	1 cut(s)	391
MslI	CAYNNNNRTG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeII	GATC	3 cut(s)	78, 263, 269
NlaIV	GGNNCC	1 cut(s)	24
PaeR7I	CTCGAG	2 cut(s)	194, 347
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 354
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	117, 167, 179, 289
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PpuMI	RGGWCCY	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	199, 310
PspPPI	RGGWCCY	1 cut(s)	199
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	263, 269
RseI	CAYNNNNRTG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	391
SatI	GCNGC	4 cut(s)	116, 166, 178, 288
Sau3AI	GATC	3 cut(s)	78, 263, 269
Sau96I	GGNCC	2 cut(s)	199, 310
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	4 cut(s)	15, 144, 195, 245
SetI	ASST	8 cut(s)	99, 120, 144, 153, 204, 300, 312, 323
SfaNI	GCATC	1 cut(s)	274
Sfr274I	CTCGAG	2 cut(s)	194, 347
SinI	GGWCC	2 cut(s)	199, 310
SlaI	CTCGAG	2 cut(s)	194, 347
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	194, 347
SmoI	CTYRAG	2 cut(s)	194, 347
Sse9I	AATT	2 cut(s)	55, 342
SsiI	CCGC	3 cut(s)	35, 177, 288
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	334
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	4 cut(s)	195, 282, 306, 348
TasI	AATT	2 cut(s)	55, 342
TauI	GCSGC	2 cut(s)	180, 290
Tru1I	TTAA	1 cut(s)	391
Tru9I	TTAA	1 cut(s)	391
TscAI	CASTG	2 cut(s)	24, 193
TseI	GCWGC	2 cut(s)	115, 165
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	2 cut(s)	64, 354
TspRI	CASTG	2 cut(s)	24, 193
VneI	GTGCAC	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	199, 310
XapI	RAATTY	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	266
XhoI	CTCGAG	2 cut(s)	194, 347
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.