Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Forward (+)

4705215 .. 4706344

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCCGACGAACCCTCAGTGGCACCCCCCCAATCCGGTTCGTCTCCTTCACCCTCAGCTTCCCCCCTCGGCAACTCTGTGATCCCAATAGTGAACAAGCTCCAAGACATCTTCGCGCAGCTCGGTTCCCAATCCACCATTGAGCTTCCTCAGGTGGCCGTCGTTGGGAGCCAAAGTAGCGGCAAGTCCAGCGTTCTCGAGGCCCTCGTCGGCCGTGACTTCTTGCCGCGTGGTTCTGAAATTTGCACGCGCCGCCCGCTTGTACTCCAGCTCTTGCAGACCAAGCGCAATGCTGACGGCACTGACGAGGAATATGGGGAGTTCCTGCACGTTCCTGGGAAGCGCTTCTACGACTTCTCCGAGATTCGGAGGGAAATTCAGGTGCTGAGACAGAGAGAGAGGCAGGGGGGAATAAAGGTGTCACAGACAAGCAGATACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

148

Amino Acids

16.04

Weight (kDa)

7.88

Isoelectric Point (pI)

87.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccII	CGCG	3 cut(s)	116, 229, 250
AciI	CCGC	4 cut(s)	180, 227, 253, 257
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	3 cut(s)	3, 156, 211
AcsI	RAATTY	2 cut(s)	240, 375
AfaI	GTAC	1 cut(s)	264
AfeI	AGCGCT	1 cut(s)	344
AfiI	CCNNNNNNNGG	3 cut(s)	35, 165, 366
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	5 cut(s)	59, 100, 121, 145, 271
AluI	AGCT	5 cut(s)	59, 100, 121, 145, 271
Alw26I	GTCTC	2 cut(s)	48, 382
AlwI	GGATC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	197
Aor51HI	AGCGCT	1 cut(s)	344
AoxI	GGCC	4 cut(s)	3, 156, 201, 211
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	2 cut(s)	240, 375
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	4 cut(s)	118, 252, 288, 345
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	42
AvaI	CYCGRG	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	22
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
BbvCI	CCTCAGC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	3 cut(s)	143, 198, 313
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	2 cut(s)	48, 382
BfoI	RGCGCY	1 cut(s)	346
BisI	GCNGC	4 cut(s)	119, 181, 227, 253
BlsI	GCNGC	4 cut(s)	120, 182, 228, 254
Bme1390I	CCNGG	1 cut(s)	336
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	3 cut(s)	24, 127, 170
BmrFI	CCNGG	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	67, 335
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	4 cut(s)	160, 190, 341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 165, 366
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	67, 335
BseLI	CCNNNNNNNGG	3 cut(s)	35, 165, 366
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	4 cut(s)	30, 69, 164, 377
BseX3I	CGGCCG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	3 cut(s)	116, 229, 250
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	4 cut(s)	5, 158, 203, 213
BshNI	GGYRCC	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	3 cut(s)	35, 165, 366
BsmAI	GTCTC	2 cut(s)	48, 382
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	4 cut(s)	5, 158, 203, 213
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	4 cut(s)	180, 227, 253, 257
BspANI	GGCC	4 cut(s)	5, 158, 203, 213
BspCNI	CTCAG	4 cut(s)	29, 68, 163, 378
BspFNI	CGCG	3 cut(s)	116, 229, 250
BspLI	GGNNCC	3 cut(s)	24, 127, 170
BspPI	GGATC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	67, 335
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	248, 257
BstDEI	CTNAG	4 cut(s)	16, 55, 150, 386
BstFNI	CGCG	3 cut(s)	116, 229, 250
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	4 cut(s)	118, 252, 288, 345
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	2 cut(s)	48, 382
BstMBI	GATC	1 cut(s)	81
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 189, 252, 256, 283
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstUI	CGCG	3 cut(s)	116, 229, 250
BstV1I	GCAGC	1 cut(s)	130
BstZI	CGGCCG	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	4 cut(s)	5, 158, 203, 213
BtsIMutI	CAGTG	2 cut(s)	24, 300
Cac8I	GCNNGC	2 cut(s)	248, 257
CaiI	CAGNNNCTG	1 cut(s)	385
CfoI	GCGC	4 cut(s)	118, 252, 288, 345
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	263
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	4 cut(s)	16, 55, 150, 386
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	3 cut(s)	3, 156, 211
EagI	CGGCCG	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	211
Eco47III	AGCGCT	1 cut(s)	344
Eco52I	CGGCCG	1 cut(s)	211
Eco81I	CCTNAGG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	48
FaiI	YATR	1 cut(s)	315
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	119, 181, 227, 253
Fsp4HI	GCNGC	4 cut(s)	119, 181, 227, 253
GlaI	GCGC	4 cut(s)	117, 251, 287, 344
GluI	GCNGC	4 cut(s)	119, 181, 227, 253
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	4 cut(s)	5, 158, 203, 213
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	4 cut(s)	118, 252, 288, 345
Hin6I	GCGC	4 cut(s)	116, 250, 286, 343
HinP1I	GCGC	4 cut(s)	116, 250, 286, 343
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	238, 361, 369
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	3 cut(s)	11, 164, 212
HpyAV	CCTTC	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	3 cut(s)	246, 277, 328
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 189, 252, 256, 283
HpyF3I	CTNAG	4 cut(s)	16, 55, 150, 386
HpySE526I	ACGT	1 cut(s)	330
HspAI	GCGC	4 cut(s)	116, 250, 286, 343
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	2 cut(s)	105, 168
LpnPI	CCDG	9 cut(s)	49, 137, 202, 281, 321, 338, 348, 365, 389
Lsp1109I	GCAGC	1 cut(s)	130
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	215, 420
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	103
MluCI	AATT	2 cut(s)	240, 375
MnlI	CCTC	9 cut(s)	25, 64, 77, 159, 193, 215, 301, 363, 393
MroXI	GAANNNNTTC	1 cut(s)	344
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	3 cut(s)	116, 229, 250
MwoI	GCNNNNNNNGC	5 cut(s)	177, 189, 252, 256, 283
NdeII	GATC	1 cut(s)	81
NlaIV	GGNNCC	3 cut(s)	24, 127, 170
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	215, 420
PaeR7I	CTCGAG	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 303, 357
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	4 cut(s)	120, 182, 228, 254
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	24, 127, 170
PspPI	GGNCC	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SatI	GCNGC	4 cut(s)	119, 181, 227, 253
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	9 cut(s)	61, 102, 123, 147, 156, 273, 333, 384, 420
Sfr274I	CTCGAG	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	240, 375
SsiI	CCGC	4 cut(s)	180, 227, 253, 257
StyD4I	CCNGG	1 cut(s)	334
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	240, 375
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	3 cut(s)	183, 229, 255
TfiI	GAWTC	1 cut(s)	364
TscAI	CASTG	2 cut(s)	24, 307
TseFI	GTSAC	2 cut(s)	215, 420
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	2 cut(s)	215, 420
TspRI	CASTG	2 cut(s)	24, 307
XapI	RAATTY	2 cut(s)	240, 375
XhoI	CTCGAG	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.