Rmu_co8410161.1_g000001
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8410161.1
Physical Location & Seq
Forward (+)
351 .. 1282
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8410161.1_g000001.1.cds

Sequence Viewer

Length: 324 bp
atggagaatctgatctcgctagtcaacaaaatccagagagcctgcacggctctcggtgaccacggcgaagccagcgcattaccgactctctgggacgcgctcccctccatcgccgtcgtcggtggccagagttcagggaagtcttctgtcttggagagcatcgtgggcaaggacttcttgccccgtggttctggaattgttactcgtcgtcctcttgtgttgcagcttcataagattgacgaaggcagcagagaatatgcggagtttctccaccttccgaggaaaaggttcacagattttggtaatttcttaatctttttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.75

Weight (kDa)

7.95

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AciI CCGC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 124
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 223, 246
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 2 cut(s) 77, 100
AsuHPI GGTGA 1 cut(s) 68
BalI TGGCCA 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 235, 258
BccI CCATC 1 cut(s) 116
BceAI ACGGC 3 cut(s) 63, 79, 98
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BfaI CTAG 1 cut(s) 20
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 2 cut(s) 224, 247
BlsI GCNGC 2 cut(s) 225, 248
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 61, 184, 278
BseDI CCNNGG 3 cut(s) 61, 184, 278
BseXI GCAGC 2 cut(s) 235, 258
BsgI GTGCAG 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 126
BslFI GGGAC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 126
BspFNI CGCG 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 61, 184, 278
BssMI GATC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 43, 73
BstDSI CCRYGG 2 cut(s) 61, 184
BstEII GGTNACC 1 cut(s) 56
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 2 cut(s) 77, 100
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 3 cut(s) 47, 72, 165
BstPI GGTNACC 1 cut(s) 56
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 235, 258
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 2 cut(s) 61, 184
BtgZI GCGATG 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 43, 73
CfoI GCGC 2 cut(s) 77, 100
CseI GACGC 1 cut(s) 104
CviJI RGCY 5 cut(s) 41, 50, 71, 126, 226
CviKI_1 RGCY 5 cut(s) 41, 50, 71, 126, 226
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 124
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
FaiI YATR 2 cut(s) 231, 258
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 224, 247
Fsp4HI GCNGC 2 cut(s) 224, 247
FspBI CTAG 1 cut(s) 20
GlaI GCGC 2 cut(s) 76, 99
GluI GCNGC 2 cut(s) 224, 247
HaeIII GGCC 1 cut(s) 126
HgaI GACGC 1 cut(s) 104
HhaI GCGC 2 cut(s) 77, 100
Hin6I GCGC 2 cut(s) 75, 98
HinP1I GCGC 2 cut(s) 75, 98
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 7, 85
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 25, 291
Hpy188I TCNGA 3 cut(s) 12, 279, 323
Hpy188III TCNNGA 2 cut(s) 34, 192
Hpy8I GTNNAC 2 cut(s) 25, 291
Hpy99I CGWCG 3 cut(s) 119, 122, 210
HpyAV CCTTC 2 cut(s) 236, 284
HpyCH4V TGCA 2 cut(s) 45, 223
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 72, 165
HspAI GCGC 2 cut(s) 75, 98
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 7 cut(s) 47, 55, 76, 85, 120, 140, 177
Lsp1109I GCAGC 2 cut(s) 235, 258
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 56, 199
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 1 cut(s) 135
MlsI TGGCCA 1 cut(s) 126
MluCI AATT 2 cut(s) 195, 304
MluNI TGGCCA 1 cut(s) 126
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 3 cut(s) 115, 222, 273
Mox20I TGGCCA 1 cut(s) 126
MroXI GAANNNNTTC 1 cut(s) 287
MscI TGGCCA 1 cut(s) 126
MseI TTAA 1 cut(s) 311
Msp20I TGGCCA 1 cut(s) 126
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 3 cut(s) 47, 72, 165
NdeII GATC 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 225, 248
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PspEI GGTNACC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 2 cut(s) 224, 247
Sau3AI GATC 1 cut(s) 12
SchI GAGTC 1 cut(s) 79
SetI ASST 3 cut(s) 228, 276, 290
SfaNI GCATC 1 cut(s) 168
Sse9I AATT 2 cut(s) 195, 304
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 20
TasI AATT 2 cut(s) 195, 304
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 223, 246
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.