Rroxscaffold_7G00161820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000383
Physical Location & Seq
Reverse (-)
4483511 .. 4486379
2869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161820.1

Sequence Viewer

Length: 579 bp
ATGAGTTGGGAGCGGTATGATAGTGATGCTGGCTCTTTGTGGATGATGGATGCGAGGGCAGGTATCGGTGTTCCACCCGTGGATTGTGGTGATGATCGTATCAGGTTGTTATCCCGATTGGCTTTAGCTGCTAAGGGATGGGATCAGGTTCTGCGTGGTCTGATGACGCTTGTTTCTAATCTGGCCCTTGTGTCTATGCTCGATGGTGGTGATCAACGTGAGTATTGCGGTGATGGCAGTCTAGTTTCTCACTCGTTTGCTGGGAGCTGCGGTGCAGGCTGGAAGACAGATGATGATGGTGATGGTGATGGTGGGTCGGATCTGGGCCAAGGTTCATTCTCAGCCGGGGGCCGAGCTCTAAGCGCGACCGGTTCTCTTTCTTCCTCATCAATGATAGGTGGGGGGGGGGTCCTCATCCTCTTCCCTATGGCAGTGACGGCGACAGCAAGTGGCGAAACTACTCGGTTAGGATTTGTGTTGGTTGGGCTTTTTGGTCTTTGTTACTATGAGCCTGGTGGACTGCAGGGGTCTCTTGTTAGGCTGAGATTGATTGGGGCTTCTCAAATTGGGTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

19.75

Weight (kDa)

4.51

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 50
AccBSI CCGCTC 1 cut(s) 13
AccII CGCG 1 cut(s) 365
AciI CCGC 3 cut(s) 13, 228, 270
AclWI GGATC 2 cut(s) 150, 327
AgeI ACCGGT 1 cut(s) 368
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 3 cut(s) 128, 267, 356
AluI AGCT 3 cut(s) 128, 267, 356
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 2 cut(s) 150, 327
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 3 cut(s) 183, 325, 349
ApeKI GCWGC 2 cut(s) 128, 267
AsiGI ACCGGT 1 cut(s) 368
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 4 cut(s) 184, 325, 349, 409
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 5 cut(s) 101, 221, 242, 311, 317
AvaII GGWCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 2 cut(s) 115, 254
BccI CCATC 7 cut(s) 40, 132, 197, 227, 290, 296, 302
BceAI ACGGC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 513
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 2 cut(s) 129, 268
BlsI GCNGC 2 cut(s) 130, 269
Bme1390I CCNGG 2 cut(s) 346, 513
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 4 cut(s) 184, 325, 349, 409
BmiI GGNNCC 2 cut(s) 350, 410
BmrFI CCNGG 2 cut(s) 346, 513
BmsI GCATC 2 cut(s) 16, 40
BpiI GAAGAC 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 3 cut(s) 78, 328, 345
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bse118I RCCGGY 1 cut(s) 368
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 3 cut(s) 78, 328, 345
BseGI GGATG 4 cut(s) 48, 55, 143, 414
BseMII CTCAG 2 cut(s) 354, 533
BseXI GCAGC 2 cut(s) 115, 254
BseYI CCCAGC 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 3 cut(s) 185, 327, 351
BshTI ACCGGT 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 2 cut(s) 345, 369
BsmAI GTCTC 1 cut(s) 534
BsnI GGCC 3 cut(s) 185, 327, 351
Bso31I GGTCTC 1 cut(s) 534
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 4 cut(s) 94, 142, 211, 319
BspACI CCGC 3 cut(s) 13, 228, 270
BspANI GGCC 3 cut(s) 185, 327, 351
BspCNI CTCAG 2 cut(s) 353, 534
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 2 cut(s) 350, 410
BspMAI CTGCAG 1 cut(s) 525
BspMI ACCTGC 1 cut(s) 50
BspPI GGATC 2 cut(s) 150, 327
BspTNI GGTCTC 1 cut(s) 534
BsrBI CCGCTC 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 3 cut(s) 78, 328, 345
BssMI GATC 4 cut(s) 94, 142, 211, 319
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 513
Bst6I CTCTTC 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 31, 277
BstDEI CTNAG 4 cut(s) 132, 340, 359, 542
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 4 cut(s) 48, 55, 143, 414
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 4 cut(s) 97, 145, 214, 322
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 4 cut(s) 94, 142, 211, 319
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 5 cut(s) 128, 234, 276, 362, 437
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 2 cut(s) 344, 511
BstSFI CTRYAG 1 cut(s) 521
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 2 cut(s) 115, 254
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 3 cut(s) 185, 327, 351
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 4 cut(s) 48, 55, 143, 414
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 31, 277
CaiI CAGNNNCTG 1 cut(s) 151
CfoI GCGC 1 cut(s) 365
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 4 cut(s) 184, 325, 349, 409
CseI GACGC 1 cut(s) 175
CspAI ACCGGT 1 cut(s) 368
CspCI CAANNNNNGTGG 1 cut(s) 551
DdeI CTNAG 4 cut(s) 132, 340, 359, 542
DpnI GATC 4 cut(s) 96, 144, 213, 321
DpnII GATC 4 cut(s) 94, 142, 211, 319
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Ecl136II GAGCTC 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 328
FaiI YATR 4 cut(s) 18, 197, 428, 507
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 129, 268
FokI GGATG 4 cut(s) 55, 62, 150, 401
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 2 cut(s) 129, 268
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 364
GluI GCNGC 2 cut(s) 129, 268
GsaI CCCAGC 1 cut(s) 264
HaeIII GGCC 3 cut(s) 185, 327, 351
HapII CCGG 2 cut(s) 345, 369
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 365
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HpaII CCGG 2 cut(s) 345, 369
HphI GGTGA 5 cut(s) 101, 221, 242, 311, 317
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 3 cut(s) 162, 319, 578
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 518
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 275, 523
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 234, 276, 362, 437
HpyF3I CTNAG 4 cut(s) 132, 340, 359, 542
HpySE526I ACGT 1 cut(s) 217
HspAI GCGC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 4 cut(s) 94, 142, 211, 319
LmnI GCTCC 2 cut(s) 10, 264
Lsp1109I GCAGC 2 cut(s) 115, 254
LweI GCATC 2 cut(s) 16, 40
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 2 cut(s) 433, 500
MalI GATC 4 cut(s) 96, 144, 213, 321
MbiI CCGCTC 1 cut(s) 13
MboI GATC 4 cut(s) 94, 142, 211, 319
MboII GAAGA 3 cut(s) 295, 372, 412
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 1 cut(s) 564
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 4 cut(s) 48, 394, 422, 428
MspI CCGG 2 cut(s) 345, 369
MspR9I CCNGG 2 cut(s) 346, 513
MvaI CCWGG 1 cut(s) 513
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 5 cut(s) 128, 234, 276, 362, 437
NciI CCSGG 1 cut(s) 346
NdeII GATC 4 cut(s) 94, 142, 211, 319
NlaIV GGNNCC 2 cut(s) 350, 410
NmeAIII GCCGAG 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 2 cut(s) 130, 269
PpuMI RGGWCCY 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 358
Psp5II RGGWCCY 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 350, 410
PspPI GGNCC 4 cut(s) 184, 325, 349, 409
PspPPI RGGWCCY 1 cut(s) 409
PstI CTGCAG 1 cut(s) 525
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 319
SacI GAGCTC 1 cut(s) 358
SatI GCNGC 2 cut(s) 129, 268
Sau3AI GATC 4 cut(s) 94, 142, 211, 319
Sau96I GGNCC 4 cut(s) 184, 325, 349, 409
ScrFI CCNGG 2 cut(s) 346, 513
SduI GDGCHC 1 cut(s) 358
SetI ASST 9 cut(s) 64, 107, 130, 150, 220, 269, 334, 358, 400
SfaNI GCATC 2 cut(s) 16, 40
SfcI CTRYAG 1 cut(s) 521
SinI GGWCC 1 cut(s) 409
Sse9I AATT 1 cut(s) 564
SsiI CCGC 3 cut(s) 13, 228, 270
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 358
StyD4I CCNGG 2 cut(s) 344, 511
StyI CCWWGG 1 cut(s) 328
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 564
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 2 cut(s) 128, 267
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 409
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.